Clone Sequence Records
BO15459.3prime Sequence
832 bp (728 high quality bases) assembled on 2006-05-30
> BO15459.3prime
ATGGTCTAGAAAGCTTGCCAATCGCATGTTGTAACCTGTCCCGCGTGTGT
TATGGTGCTCCCAATCGTCTGGAGAATTGACCACCTGCCATTCGTACCAC
ACTTTGGTTGCATCCACGCATCGCCAAAACTGGATGGATATAGTCTGTCC
CTCCCTCAGAGTTCTTGGACGCGTTGCGAAGAACATGGGGAACCAGGAGA
ACATGCCAGGCGTATGGGTCAGAGGATTGATGCTTAGGCAGATGTCCTTG
TACAAATGGGTATCAAAGTATCCGCCGATTCCGTGCAGCACGCAATCTTT
ATTGACTTTAAATGAAACCGTCTTGCAGCGAGTATTGTCAATATTTTCCG
CTCGATTAGGATGTACGAATTCAAACAGAGCCTGCGGCTCGTCAATATGG
TAAATATTCTTTAGCAGCGACACATAGCCGTAGTCGAAGGCAGGATAGGT
TGGTAACAATTGGCAGACATTTTGGTGCAGCACTGCTGACATCAGTGGAT
TAATGTAGGAGGTGGATTTGTAGGGTATACTGATTCCATCCGGTTTGAGC
AGCTTCAGTGCTCCATCAAGGCACTCGGGCGAAAGTTCATTATCGCCAAA
GGAACCAAGTAACTCCGAAACCATGATGTCAGCCAGCTCTGGAGGGGAAA
AGTCCCGCATGTCCTTTGAAAAAATGTGAACATCCTTATCGGCCCAAAGC
GTTTTAACCATGTTGGAGAGGGTGCGGATGGGATTGGGATTCTTTTTCTA
TGATGTAGAGGCGAACTTTGCGCTTCGTTAACTCGGCAGCATTGAAAACA
ACTCTCGCTAAAGGACCTCGTCCTCCACCCCA
BO15459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3730-PA | 1833 | csul-RA | 1103..1830 | 746..19 | 3615 | 99.8 | Minus |
| CG3730-PB | 1818 | csul-RB | 1088..1815 | 746..19 | 3615 | 99.8 | Minus |
| CG3730-PA | 1833 | csul-RA | 1020..1106 | 830..744 | 410 | 98.8 | Minus |
| CG3730-PB | 1818 | csul-RB | 1005..1091 | 830..744 | 410 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1998 | CG3730-RB | 1100..1910 | 830..19 | 4005 | 99.6 | Minus |
| csul-RA | 2013 | CG3730-RA | 1115..1925 | 830..19 | 4005 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16266141..16266653 | 684..172 | 2565 | 100 | Minus |
| 2R | 25286936 | 2R | 16266718..16266871 | 172..19 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 16265931..16266076 | 830..684 | 655 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:09:19 has no hits.
BO15459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:29 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-PB | 1004..1818 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:45 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3730-PB | 1004..1818 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:48:58 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1114..1928 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:10 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1114..1928 | 15..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:10 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16265930..16266076 | 684..831 | 97 | -> | Minus |
| 2R | 16266142..16266653 | 172..683 | 100 | -> | Minus |
| 2R | 16266719..16266874 | 15..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:48:58 Download gff for
BO15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12153435..12153581 | 684..831 | 97 | -> | Minus |
| arm_2R | 12153647..12154158 | 172..683 | 100 | -> | Minus |
| arm_2R | 12154224..12154379 | 15..171 | 98 | | Minus |
BO15459.5prime Sequence
775 bp (751 high quality bases) assembled on 2006-05-29
> BO15459.5prime
GAAGTTATCAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTG
TTAATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAAT
GTGGTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGA
ATCGGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATT
CCAAGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGAC
AAGCTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGC
GGAGCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGG
AAAACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGATGATTTT
CCTTCAGGGAACTGGTTCATCCAAGTGCCCATCACCAATCCAGAACTGGC
CACATTCGAGCACCGAAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGG
AATCGAATGACCCGTGGAACTGGTGGAATAACCTGCGCATGGTCACCAAA
CACAGCACCAAAGTGAAGGTTGTGATAGAGCTAAACGATGCTGATCGACC
CAGCAAGGAAACAGTGCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCA
TCATTCCGTCTTCCCTGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTG
AAGAAGGAGTGGCAGCTCATCGTCGGGCACTTCATCTCGGTACGGGCCAA
CATCATCATCTCCACAAATCCAAAC
BO15459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3730-PA | 1833 | csul-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
| CG3730-PB | 1818 | csul-RB | 1..376 | 17..392 | 1880 | 100 | Plus |
| CG3730-PB | 1818 | csul-RB | 376..740 | 407..771 | 1825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 2013 | CG3730-RA | 96..854 | 17..775 | 3780 | 99.9 | Plus |
| csul-RB | 1998 | CG3730-RB | 96..839 | 17..775 | 3545 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16265166..16265549 | 392..775 | 1905 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16264747..16265122 | 17..392 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:33:02 has no hits.
BO15459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:29 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:47 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3730-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:41 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..854 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:41 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..854 | 17..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:41 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16265167..16265549 | 393..775 | 99 | | Plus |
| 2R | 16264747..16265122 | 17..392 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:41 Download gff for
BO15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12152252..12152627 | 17..392 | 100 | -> | Plus |
| arm_2R | 12152672..12153054 | 393..775 | 99 | | Plus |
BO15459.complete Sequence
1864 bp assembled on 2006-10-11
GenBank Submission: FJ633479
> BO15459.complete
GAAGTTATCAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTG
TTAATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAAT
GTGGTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGA
ATCGGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATT
CCAAGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGAC
AAGCTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGC
GGAGCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGG
AAAACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGATGATTTT
CCTTCAGGGAACTGGTTCATCCAAGTGCCCATCACCAATCCAGAACTGGC
CACATTCGAGCACCGAAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGG
AATCGAATGACCCGTGGAACTGGTGGAATAACCTGCGCATGGTCACCAAA
CACAGCACCAAAGTGAAGGTTGTGATAGAGCTAAACGATGCTGATCGACC
CAGCAAGGAAACAGTGCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCA
TCATTCCGTCTTCCCTGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTG
AAGAAGGAGTGGCAGCTCATCGTCGGGCACTTCATCTCGGTACGGGCCAA
CATCATCATCTCCACAAATCCCAACGATAAGGCTTTGTGCCAGTACGCGG
ATTACGTAAATAAGCTAATTAATGATAACTGCGATAAGCACATGCTAAAC
AGCTATGAAAACATGCTGGAAATTCCACTGCAGCCTCTTTGCGATAATCT
GGACACCTATACCTATGAGGTATTCGAAACTGATCCTGTCAAATACAAAC
TCTATCAGGATGCCGTACAAGCGGCCCTGTTGGATCGAGTAAGCGCTGCG
GAGGCTAAAACGAAACTGACAGTTGTAATGCTACTGGGTGGAGGACGAGG
TCCTTTAGCGAGAGCTGTTTTCAATGCTGCCGAGTTAACGAAGCGCAAAG
TTCGCCTCTACATCATAGAAAAGAATCCCAATGCCATCCGCACCCTCTCC
AACATGGTTAAAACGCTTTGGGCCGATAAGGATGTTCACATTTTTTCAAA
GGACATGCGGGACTTTTCCCCTCCAGAGCTGGCTGACATCATGGTTTCGG
AGTTACTTGGTTCCTTTGGCGATAATGAACTTTCGCCCGAGTGCCTTGAT
GGAGCACTGAAGCTGCTCAAACCGGATGGAATCAGTATACCCTACAAATC
CACCTCCTACATTAATCCACTGATGTCAGCAGTGCTGCACCAAAATGTCT
GCCAATTGTTACCAACCTATCCTGCCTTCGACTACGGCTATGTGTCGCTG
CTAAAGAATATTTACCATATTGACGAGCCGCAGGCTCTGTTTGAATTCGT
ACATCCTAATCGAGCGGAAAATATTGACAATACTCGCTGCAAGACGGTTT
CATTTAAAGTCAATAAAGATTGCGTGCTGCACGGAATCGGCGGATACTTT
GATACCCATTTGTACAAGGACATCTGCCTAAGCATCAATCCTCTGACCCA
TACGCCTGGCATGTTCTCCTGGTTCCCCATGTTCTTCGCAACGCGTCCAA
GAACTCTGAGGGAGGGACAGACTATATCCATCCAGTTTTGGCGATGCGTG
GATGCAACCAAAGTGTGGTACGAATGGCAGGTGGTCAATTCTCCAGACGA
TTGGGAGCACCATAACACACGCGGGACAGGTTACAACATGCGATTGGCAA
GCTTTCTAGACCAT
BO15459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 1833 | CG3730-PA | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| csul-RB | 1818 | CG3730-PB | 1..1815 | 17..1846 | 8890 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 2013 | CG3730-RA | 96..1925 | 17..1846 | 9150 | 100 | Plus |
| csul-RB | 1998 | CG3730-RB | 96..1910 | 17..1846 | 8890 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16266141..16266653 | 1181..1693 | 2565 | 100 | Plus |
| 2R | 25286936 | 2R | 16265166..16265626 | 392..852 | 2305 | 100 | Plus |
| 2R | 25286936 | 2R | 16264747..16265122 | 17..392 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265853 | 851..1018 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 16265913..16266076 | 1018..1181 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 16266718..16266871 | 1693..1846 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:43 has no hits.
BO15459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:38 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1..1833 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:17 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 73..1905 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:51 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1925 | 17..1848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:38 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 73..1905 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:03 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1925 | 17..1848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:03 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16265688..16265853 | 853..1018 | 100 | -> | Plus |
| 2R | 16265914..16266076 | 1019..1181 | 100 | -> | Plus |
| 2R | 16264747..16265122 | 17..392 | 100 | -> | Plus |
| 2R | 16265167..16265626 | 393..852 | 100 | -> | Plus |
| 2R | 16266142..16266653 | 1182..1693 | 100 | -> | Plus |
| 2R | 16266719..16266871 | 1694..1848 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:51 Download gff for
BO15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12152252..12152627 | 17..392 | 100 | -> | Plus |
| arm_2R | 12152672..12153131 | 393..852 | 100 | -> | Plus |
| arm_2R | 12153193..12153358 | 853..1018 | 100 | -> | Plus |
| arm_2R | 12153419..12153581 | 1019..1181 | 100 | -> | Plus |
| arm_2R | 12153647..12154158 | 1182..1693 | 100 | -> | Plus |
| arm_2R | 12154224..12154376 | 1694..1848 | 98 | | Plus |
BO15459.pep Sequence
Translation from 16 to 1864
> BO15459.pep
MNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPTY
PATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQN
VGNLMVRLRGPENENLASIVLAKTKDDFPSGNWFIQVPITNPELATFEHR
KDATAEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETV
RRWLGEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIIST
NPNDKALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTY
EVFETDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARA
VFNAAELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDF
SPPELADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYIN
PLMSAVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRA
ENIDNTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMF
SWFPMFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHN
TRGTGYNMRLASFLDH
BO15459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-PA | 610 | CG3730-PA | 1..610 | 1..610 | 3264 | 100 | Plus |
| csul-PB | 605 | CG3730-PB | 1..605 | 1..610 | 3219 | 99.2 | Plus |
