Clone Sequence Records
BO15460.3prime Sequence
814 bp (760 high quality bases) assembled on 2006-05-30
> BO15460.3prime
ATGGTCTAGAAAGCTTGCGTACTTGATCAGATTGCTGACCGGGAAGGAGC
GCCGGAGACTCATGCACTTCTCTCGGTCGATGAACAGGGCATTGACTTTG
TTGCGCAGATCCACCTCCAGGGTGCAGCGCGTCTTTAGTAGGCCCTGATG
GGTGGCCTCCGCCTCCATCAGCTTGTGGTGCAGCGTCTCCACGGCACCCT
GGATGTCCTGCACCTCCTGGACGAGGCGGTCCTGGGCGTGGTCCTTGCAC
AGCTCGACGCCCTCGCGGTGGGAGCGGGCCTCCAGCCGCGTCTGGGCCAC
TTTCAACGGCCCGGACTTGTCCTGGATGGCCTTCTGCAGGAGGAAGAGAT
GCTTCTCCATGTCGAACAGCTCCTGTTGGACCTTCTGAAGGTGCAGCTGC
ACCCGGTTCTTCGCCTCGGCCATCTCCTGCGAGCGGCGATCGAAGGCGTT
GTTCGTGTTGCTCCAGAAGTCCCACACGGTGGTGGCCACCGAGTTGACCA
CACTCTGGGCATCGCTCCGCAGCTGGGAAAGCTTCGCGCGCTCCGCCTGG
GAACGGCGGACGTGCTCGCTGCTGGCCTGCGCCCAGGACTCCTGGGTGCT
GACCGAGGGATCGAACTTCTCGATGCCGCCGTAGTAGGTGATGCCGCGGC
TGTGGTTGTTCAGCTGGTGGCACATGGAGTCGATGCCGAGCGAGGACTCC
TTGTGCGACACATCGTCCTCGAGGAGATGCTGGGCGCCGCGGCAGTCGAG
GGCCTGCTTCGAGATCTTCTCGTGCAGGCCGCCTAGCCGGTCACGGGAGT
TCCTTCAGTGTTGA
BO15460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-PA | 1806 | CG32820-RA | 1018..1803 | 804..19 | 3930 | 100 | Minus |
CG32820-PB | 1563 | CG32820-RB | 775..1560 | 804..19 | 3930 | 100 | Minus |
CG32819-PB | 1563 | CG32819-RB | 775..1560 | 804..19 | 3930 | 100 | Minus |
CG32819-PA | 1806 | CG32819-RA | 1018..1803 | 804..19 | 3930 | 100 | Minus |
CG17450-PB | 1806 | CG17450-RB | 1018..1803 | 804..19 | 3880 | 99.7 | Minus |
CG17450-PA | 1563 | CG17450-RA | 775..1560 | 804..19 | 3880 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-RB | 2034 | CG32820-RB | 923..1708 | 804..19 | 3930 | 100 | Minus |
CG32820-RA | 2418 | CG32820-RA | 1307..2092 | 804..19 | 3930 | 100 | Minus |
CG32819-RA | 2191 | CG32819-RA | 1080..1865 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21612193..21612728 | 19..554 | 2680 | 100 | Plus |
X | 23542271 | X | 21618285..21618820 | 19..554 | 2680 | 100 | Plus |
X | 23542271 | X | 21606098..21606633 | 19..554 | 2650 | 99.6 | Plus |
X | 23542271 | X | 21606796..21607046 | 554..804 | 1255 | 100 | Plus |
X | 23542271 | X | 21612888..21613138 | 554..804 | 1255 | 100 | Plus |
X | 23542271 | X | 21618980..21619230 | 554..804 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:09:11 has no hits.
BO15460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:31 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-PA | 1008..1806 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:48 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32819-PA | 1008..1806 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:48:55 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RB | 913..1708 | 19..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:24 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32819-RA | 1070..1865 | 19..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:24 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21612193..21612727 | 19..553 | 100 | <- | Plus |
X | 21612888..21613145 | 554..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:48:55 Download gff for
BO15460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21483220..21483754 | 19..553 | 100 | <- | Plus |
arm_X | 21483915..21484172 | 554..813 | 98 | | Plus |
BO15460.5prime Sequence
912 bp (791 high quality bases) assembled on 2006-05-29
> BO15460.5prime
GAAGTTATCAGTCGACATGCTCTGCTGGGCCAACGAGGATCACTATCTGA
GCCAACGCTACCCGAATCCGCAGCAAAAGGCGCCAGAAACGCTTAAGAAC
CTGCTGTTGCGATCCAGTGTACCGATAGTGGGTGCTCCGAATCCCGAGAA
GGACTCGCATTTCGCCGGCACCATGGCACCGCTCAAGGGTCAGGAGGTGC
TTAAGTTCCACAAGCACTCCTACCTCGAGAACCGCATCTTCGATCACCGC
CTGGTCAAGGACAACCTGCTGGACAAGTGGCCCACCGCTGACATGAACGA
GTACAACGAGCGCAAGGACCACCGCAACCTCATGGAGTCCTATCCATGGA
GCCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATC
CCGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCG
CCCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGC
CGGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAG
ACGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCC
ACAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGT
GGTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAAC
CTCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGA
CGAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGC
GCATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAG
AAACTGATCGCCGAGATGTCGGACATCAACAAGCTGCAGCGGCAGTGCGG
CAAGGCACTTCT
BO15460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-PA | 1806 | CG32820-RA | 1..896 | 17..912 | 4430 | 99.7 | Plus |
CG32819-PA | 1806 | CG32819-RA | 1..896 | 17..912 | 4430 | 99.7 | Plus |
CG17450-PB | 1806 | CG17450-RB | 1..896 | 17..912 | 4405 | 99.6 | Plus |
CG32820-PB | 1563 | CG32820-RB | 85..653 | 344..912 | 2795 | 99.6 | Plus |
CG32819-PB | 1563 | CG32819-RB | 85..653 | 344..912 | 2795 | 99.6 | Plus |
CG17450-PA | 1563 | CG17450-RA | 85..653 | 344..912 | 2795 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-RA | 2418 | CG32820-RA | 290..1185 | 17..912 | 4450 | 99.8 | Plus |
CG32819-RA | 2191 | CG32819-RA | 63..958 | 17..912 | 4450 | 99.8 | Plus |
CG17450-RB | 1995 | CG17450-RB | 63..958 | 17..912 | 4435 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21607507..21607859 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21613599..21613951 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21619691..21620043 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21614624..21614950 | 343..17 | 1635 | 100 | Minus |
X | 23542271 | X | 21620716..21621042 | 343..17 | 1635 | 100 | Minus |
X | 23542271 | X | 21608532..21608858 | 343..17 | 1620 | 99.7 | Minus |
X | 23542271 | X | 21607168..21607384 | 912..696 | 1055 | 99.1 | Minus |
X | 23542271 | X | 21613260..21613476 | 912..696 | 1055 | 99.1 | Minus |
X | 23542271 | X | 21619352..21619568 | 912..696 | 1055 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:04:05 has no hits.
BO15460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:31 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:50 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32819-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:21 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RA | 52..958 | 8..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:17 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32819-RA | 52..958 | 8..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:17 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21613260..21613475 | 697..912 | 99 | <- | Minus |
X | 21613599..21613951 | 344..696 | 100 | <- | Minus |
X | 21614624..21614961 | 8..343 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:21 Download gff for
BO15460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21484287..21484502 | 697..912 | 99 | <- | Minus |
arm_X | 21484626..21484978 | 344..696 | 100 | <- | Minus |
arm_X | 21485651..21485988 | 8..343 | 99 | | Minus |
BO15460.complete Sequence
1837 bp assembled on 2006-10-11
GenBank Submission: FJ633480
> BO15460.complete
GAAGTTATCAGTCGACATGCTCTGCTGGGCCAACGAGGATCACTATCTGA
GCCAACGCTACCCGAATCCGCAGCAAAAGGCGCCAGAAACGCTTAAGAAC
CTGCTGTTGCGATCCAGTGTACCGATAGTGGGTGCTCCGAATCCCGAGAA
GGACTCGCATTTCGCCGGCACCATGGCACCGCTCAAGGGTCAGGAGGTGC
TTAAGTTCCACAAGCACTCCTACCTCGAGAACCGCATCTTCGATCACCGC
CTGGTCAAGGACAACCTGCTGGACAAGTGGCCCACCGCTGACATGAACGA
GTACAACGAGCGCAAGGACCACCGCAACCTCATGGAGTCCTATCCATGGA
GCCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATC
CCGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCG
CCCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGC
CGGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAG
ACGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCC
ACAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGT
GGTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAAC
CTCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGA
CGAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGC
GCATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAG
AAGCTGATCGCCGAGATGTCGGACATCAACGAGCTGCAGCGGCAGTGCGG
CAAGGCACTTCTCGACCTGGAGATACCACTGCACATCGCCCAGGAGTGCC
TCTTTCACCGAGAGTCGCGCCAGGGCACGGAGAAGGTGCATGACATCGTG
GAGAAGGCCCTCCTCGTTGAGATCAACAACTTGAGGAACTCCCGTGACCG
GCTAGGCGGCCTGCACGAGAAGATCTCGAAGCAGGCCCTCGACTGCCGCG
GCGCCCAGCATCTCCTCGAGGACGATGTGTCGCACAAGGAGTCCTCGCTC
GGCATCGACTCCATGTGCCACCAGCTGAACAACCACAGCCGCGGCATCAC
CTACTACGGCGGCATCGAGAAGTTCGATCCCTCGGTCAGCACCCAGGAGT
CCTGGGCGCAGGCCAGCAGCGAGCACGTCCGCCGTTCCCAGGCGGAGCGC
GCGAAGCTTTCCCAGCTGCGGAGCGATGCCCAGAGTGTGGTCAACTCGGT
GGCCACCACCGTGTGGGACTTCTGGAGCAACACGAACAACGCCTTCGATC
GCCGCTCGCAGGAGATGGCCGAGGCGAAGAACCGGGTGCAGCTGCACCTT
CAGAAGGTCCAACAGGAGCTGTTCGACATGGAGAAGCATCTCTTCCTCCT
GCAGAAGGCCATCCAGGACAAGTCCGGGCCGTTGAAAGTGGCCCAGACGC
GGCTGGAGGCCCGCTCCCACCGCGAGGGCGTCGAGCTGTGCAAGGACCAC
GCCCAGGACCGCCTCGTCCAGGAGGTGCAGGACATCCAGGGTGCCGTGGA
GACGCTGCACCACAAGCTGATGGAGGCGGAGGCCACCCATCAGGGCCTAC
TAAAGACGCGCTGCACCCTGGAGGTGGATCTGCGCAACAAAGTCAATGCC
CTGTTCATCGACCGAGAGAAGTGCATGAGTCTCCGGCGCTCCTTCCCGGT
CAGCAATCTGATCAAGTACGCAAGCTTTCTAGACCAT
BO15460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-RA | 1806 | CG32820-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
CG32819-RA | 1806 | CG32819-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
CG17450-RB | 1806 | CG17450-PB | 1..1803 | 17..1819 | 8970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-RA | 2418 | CG32820-RA | 290..2092 | 17..1819 | 9015 | 100 | Plus |
CG32819-RA | 2191 | CG32819-RA | 63..1865 | 17..1819 | 9015 | 100 | Plus |
CG17450-RB | 1995 | CG17450-RB | 63..1865 | 17..1819 | 8970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21606796..21607384 | 1284..696 | 2945 | 100 | Minus |
X | 23542271 | X | 21612888..21613476 | 1284..696 | 2945 | 100 | Minus |
X | 23542271 | X | 21618980..21619568 | 1284..696 | 2945 | 100 | Minus |
X | 23542271 | X | 21612193..21612728 | 1819..1284 | 2680 | 100 | Minus |
X | 23542271 | X | 21618285..21618820 | 1819..1284 | 2680 | 100 | Minus |
X | 23542271 | X | 21606098..21606633 | 1819..1284 | 2650 | 99.6 | Minus |
X | 23542271 | X | 21607507..21607859 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21613599..21613951 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21619691..21620043 | 696..344 | 1765 | 100 | Minus |
X | 23542271 | X | 21614624..21614950 | 343..17 | 1635 | 100 | Minus |
X | 23542271 | X | 21620716..21621042 | 343..17 | 1635 | 100 | Minus |
X | 23542271 | X | 21608532..21608858 | 343..17 | 1620 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:26 has no hits.
BO15460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:55 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RA | 1..1806 | 17..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:58 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RA | 52..1865 | 8..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:17 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RA | 63..1865 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:55 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32820-RA | 52..1868 | 8..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:12 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32819-RA | 63..1865 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:12 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21614624..21614950 | 17..343 | 100 | | Minus |
X | 21612190..21612727 | 1285..1821 | 99 | <- | Minus |
X | 21612888..21613475 | 697..1284 | 100 | <- | Minus |
X | 21613599..21613951 | 344..696 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:17 Download gff for
BO15460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21483217..21483754 | 1285..1821 | 99 | <- | Minus |
arm_X | 21483915..21484502 | 697..1284 | 100 | <- | Minus |
arm_X | 21484626..21484978 | 344..696 | 100 | <- | Minus |
arm_X | 21485651..21485977 | 17..343 | 100 | | Minus |
BO15460.pep Sequence
Translation from 16 to 1837
> BO15460.pep
MLCWANEDHYLSQRYPNPQQKAPETLKNLLLRSSVPIVGAPNPEKDSHFA
GTMAPLKGQEVLKFHKHSYLENRIFDHRLVKDNLLDKWPTADMNEYNERK
DHRNLMESYPWSQAGAPPCMEPVMGPSIPPRVGAAYETPTKHPWRPAMAY
ELIQVKHMPEQPVTNQLTKQCFLPKGMKTDGMIFPNLVTGFDRNPQHAAR
AALYTRYTSNEWYNNNMTKYSESNMNRNLSERMRNDAVRLMRETDEKATS
GQRDAGRRLGERITDLTFWRNELNAELEKLIAEMSDINELQRQCGKALLD
LEIPLHIAQECLFHRESRQGTEKVHDIVEKALLVEINNLRNSRDRLGGLH
EKISKQALDCRGAQHLLEDDVSHKESSLGIDSMCHQLNNHSRGITYYGGI
EKFDPSVSTQESWAQASSEHVRRSQAERAKLSQLRSDAQSVVNSVATTVW
DFWSNTNNAFDRRSQEMAEAKNRVQLHLQKVQQELFDMEKHLFLLQKAIQ
DKSGPLKVAQTRLEARSHREGVELCKDHAQDRLVQEVQDIQGAVETLHHK
LMEAEATHQGLLKTRCTLEVDLRNKVNALFIDREKCMSLRRSFPVSNLIK
YASFLDH
BO15460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32820-PA | 601 | CG32820-PA | 1..601 | 1..601 | 3170 | 100 | Plus |
CG32819-PA | 601 | CG32819-PA | 1..601 | 1..601 | 3170 | 100 | Plus |
CG17450-PB | 601 | CG17450-PB | 1..601 | 1..601 | 3164 | 99.8 | Plus |
CG32820-PB | 520 | CG32820-PB | 29..520 | 110..601 | 2574 | 100 | Plus |
CG32819-PB | 520 | CG32819-PB | 29..520 | 110..601 | 2574 | 100 | Plus |