Clone Sequence Records
BO15464.3prime Sequence
816 bp (757 high quality bases) assembled on 2006-05-30
> BO15464.3prime
ATGGTCTAGAAAGCTTGCCTTAAAGAACGGGTTCTTAGATGCCGATGACT
TCATGGTGCACAAGATCTGACGTTCCAGCTGAAAGTCATAGTCCAGGGAC
TTGAGCAGCGTAGAGATTTCTGGCAGTGTAGGTATATCATTCACAGCTTG
GTTGCGCTGCAGCCTAACGTCCATGACGAAAGGCACTCCCTCCAGCTCGG
TGTAGGTGCCCAAGGTGCCCGTTCCGCCGTAAGTACCGTGTCCTCCGCCA
GAACCCACTCCCGCTGGCCGCGGTGGCGCCGGTCGCTGTGGCGAGTTTAT
TTGATAGTTGGCTTGGATCTCCTCATAGTCATGGTGTTCAGTCGGCGGTT
GTGGCAGTGGTCCACGTGAGTTGCGTTGACCCTGGAGATTCAGGCGGTTC
AGGGCCTGCTCCACCTCGCAAGTGGCTGGAGCTGGCAATCCTCCACCTGG
CACTGGCGGCGAAAGGCGCACTGGGATCGCGCTGGTTTTGTAGCAGATAA
GCACTCCGTTGATATCGCCGGCCAGCTTAAAGCCATCGGGCGCTGCCTTC
AACTTGGAGCAGAGTATTATGTCGGTGACCGCCTGGGTCACAGTGCCGCG
CTTGGAGAGCTTGTAGATCAACTGCCGCTTGCGCCAGGCCTTCTGGTCGC
TATCGGCAGTGCGGGAGACCTGCGAGAATTCCTTGGGCGGCGGCGTTTTA
TCCGAAATCACTTGTAGGGTCTCCACCACGTATTCCGGCAGGCCCTCGGA
CTTGGACAGGCAGAGGTAGCGTGTGTTCTGGCGTCCAAACAGGCTGTAGT
CGCGCCATAGGTCCGC
BO15464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-PA | 1059 | CG7192-RA | 259..1056 | 816..19 | 3990 | 100 | Minus |
CG7192-PB | 1059 | CG7192-RB | 259..1056 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-RD | 2101 | CG7192-RD | 467..1264 | 816..19 | 3990 | 100 | Minus |
CG7192-RB | 1928 | CG7192-RB | 294..1091 | 816..19 | 3990 | 100 | Minus |
CG7192-RA | 2126 | CG7192-RA | 492..1289 | 816..19 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18098868..18099222 | 358..712 | 1775 | 100 | Plus |
X | 23542271 | X | 18098579..18098800 | 136..357 | 1110 | 100 | Plus |
X | 23542271 | X | 18098395..18098511 | 19..135 | 585 | 100 | Plus |
X | 23542271 | X | 18099287..18099390 | 713..816 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:00:42 has no hits.
BO15464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:37 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-PB | 259..1059 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:57 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-PB | 259..1059 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:47:23 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 492..1296 | 11..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:30:41 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 492..1296 | 11..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:30:41 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18098388..18098511 | 11..135 | 96 | <- | Plus |
X | 18098579..18098800 | 136..357 | 100 | <- | Plus |
X | 18098868..18099222 | 358..712 | 100 | <- | Plus |
X | 18099287..18099390 | 713..816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:47:23 Download gff for
BO15464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17992421..17992544 | 11..135 | 96 | <- | Plus |
arm_X | 17992612..17992833 | 136..357 | 100 | <- | Plus |
arm_X | 17992901..17993255 | 358..712 | 100 | <- | Plus |
arm_X | 17993320..17993423 | 713..816 | 100 | | Plus |
BO15464.5prime Sequence
850 bp (810 high quality bases) assembled on 2006-05-29
> BO15464.5prime
GAAGTTATCAGTCGACATGAACAAAGTGGGCAAGCACATTCAAAGCGGCA
TCGGTGGAGCACCCAACGCGGCATTGTCCACGGCGGCTCTACTGGGTACT
CCGCTGGAGGCGACCAATGGTGCTGGCTCGACCAGCACCACCAATGTATT
CAATTCCATCATGAGCTTTCTGCCGGACAATCGACCCATCACCTCGCTGC
ACATCGTCGAGGATTTCGAGCGCTGCCCGAAGAACTTCAGTGCCATAAGC
CGCACCTACGACCAGGATTCGGATGCGGACCTATGGCGCGACTACAGCCT
GTTTGGACGCCAGAACACACGCTACCTCTGCCTGTCCAAGTCCGAGGGCC
TGCCGGAATACGTGGTGGAGACCCTACAAGTGATTTCGGATAAAACGCCG
CCGCCCAAGGAATTCTCGCAGGTCTCCCGCACTGCCGATAGCGACCAGAA
GGCCTGGCGCAAGCGGCAGTTGATCTACAAGCTCTCCAAGCGCGGCACTG
TGACCCAGGCGGTCACCGACATAATACTCTGCTCCAAGTTGAAGGCAGCG
CCCGATGGCTTTAAGCTGGCCGGCGATATCAACGGAGTGCTTATCTGCTA
CAAAACCAGCGCGATCCCAGTGCGCCTTTCGCCGCCAGTGCCAGGTGGAG
GATTGCCAGCTCCAGCCACTTGCGAGGTGGAGCAGGCCCTGAACCGCCTG
AATCTCCAGGGTCAACGCAACTCACGTGGACCACTGCCACAACCGCCGAC
TGAACACCATGACTATGAGGAGATCCAAGCCAACTATCAAATAAACTCGC
CACAGCGACCGGCGCCACCGCGGCCAGCGGGAATGGGTTCTGGCGGAGGA
BO15464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-PA | 1059 | CG7192-RA | 1..834 | 17..850 | 4145 | 99.8 | Plus |
CG7192-PB | 1059 | CG7192-RB | 1..834 | 17..850 | 4145 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-RD | 2101 | CG7192-RD | 209..1042 | 17..850 | 4155 | 99.9 | Plus |
CG7192-RB | 1928 | CG7192-RB | 36..869 | 17..850 | 4155 | 99.9 | Plus |
CG7192-RA | 2126 | CG7192-RA | 234..1067 | 17..850 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18098868..18099222 | 733..379 | 1775 | 100 | Minus |
X | 23542271 | X | 18099506..18099711 | 222..17 | 1030 | 100 | Minus |
X | 23542271 | X | 18099287..18099443 | 378..222 | 785 | 100 | Minus |
X | 23542271 | X | 18098684..18098800 | 850..734 | 570 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:48:48 has no hits.
BO15464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:38 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-PB | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:58 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-PB | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:37 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 230..1066 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:58 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 230..1066 | 10..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:58 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18098685..18098800 | 734..849 | 99 | <- | Minus |
X | 18098868..18099222 | 379..733 | 100 | <- | Minus |
X | 18099287..18099442 | 223..378 | 100 | <- | Minus |
X | 18099506..18099715 | 10..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:37 Download gff for
BO15464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17992718..17992833 | 734..849 | 99 | <- | Minus |
arm_X | 17992901..17993255 | 379..733 | 100 | <- | Minus |
arm_X | 17993320..17993475 | 223..378 | 100 | <- | Minus |
arm_X | 17993539..17993748 | 10..222 | 98 | | Minus |
BO15464.complete Sequence
1090 bp (1090 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633481
> BO15464.complete
GAAGTTATCAGTCGACATGAACAAAGTGGGCAAGCACATTCAAAGCGGCA
TCGGTGGAGCACCCAACGCGGCATTGTCCACGGCGGCTCTACTGGGTACT
CCGCTGGAGGCGACCAATGGTGCTGGCTCGACCAGCACCACCAATGTATT
CAATTCCATCATGAGCTTTCTGCCGGACAATCGACCCATCACCTCGCTGC
ACATCGTCGAGGATTTCGAGCGCTGCCCGAAGAACTTCAGTGCCATAAGC
CGCACCTACGACCAGGATTCGGATGCGGACCTATGGCGCGACTACAGCCT
GTTTGGACGCCAGAACACACGCTACCTCTGCCTGTCCAAGTCCGAGGGCC
TGCCGGAATACGTGGTGGAGACCCTACAAGTGATTTCGGATAAAACGCCG
CCGCCCAAGGAATTCTCGCAGGTCTCCCGCACTGCCGATAGCGACCAGAA
GGCCTGGCGCAAGCGGCAGTTGATCTACAAGCTCTCCAAGCGCGGCACTG
TGACCCAGGCGGTCACCGACATAATACTCTGCTCCAAGTTGAAGGCAGCG
CCCGATGGCTTTAAGCTGGCCGGCGATATCAACGGAGTGCTTATCTGCTA
CAAAACCAGCGCGATCCCAGTGCGCCTTTCGCCGCCAGTGCCAGGTGGAG
GATTGCCAGCTCCAGCCACTTGCGAGGTGGAGCAGGCCCTGAACCGCCTG
AATCTCCAGGGTCAACGCAACTCACGTGGACCACTGCCACAACCGCCGAC
TGAACACCATGACTATGAGGAGATCCAAGCCAACTATCAAATAAACTCGC
CACAGCGACCGGCGCCACCGCGGCCAGCGGGAGTGGGTTCTGGCGGAGGA
CACGGTACTTACGGCGGAACGGGCACCTTGGGCACCTACACCGAGCTGGA
GGGAGTGCCTTTCGTCATGGACGTTAGGCTGCAGCGCAACCAAGCTGTGA
ATGATATACCTACACTGCCAGAAATCTCTACGCTGCTCAAGTCCCTGGAC
TATGACTTTCAGCTGGAACGTCAGATCTTGTGCACCATGAAGTCATCGGC
ATCTAAGAACCCGTTCTTTAAGGCAAGCTTTCTAGACCAT
BO15464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-RD | 1059 | CG7192-PD | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG7192-RB | 1059 | CG7192-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG7192-RA | 1059 | CG7192-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-RD | 2101 | CG7192-RD | 209..1264 | 17..1072 | 5280 | 100 | Plus |
CG7192-RB | 1928 | CG7192-RB | 36..1091 | 17..1072 | 5280 | 100 | Plus |
CG7192-RA | 2126 | CG7192-RA | 234..1289 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18098868..18099222 | 733..379 | 1775 | 100 | Minus |
X | 23542271 | X | 18098579..18098800 | 955..734 | 1110 | 100 | Minus |
X | 23542271 | X | 18099506..18099711 | 222..17 | 1030 | 100 | Minus |
X | 23542271 | X | 18099287..18099443 | 378..222 | 785 | 100 | Minus |
X | 23542271 | X | 18098395..18098511 | 1072..956 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:25:02 has no hits.
BO15464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:39 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RB | 1..1059 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:53 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RB | 32..1098 | 10..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:49 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 234..1289 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:39 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RB | 32..1098 | 10..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:10 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7192-RA | 234..1289 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:10 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18098868..18099222 | 379..733 | 100 | <- | Minus |
X | 18099287..18099442 | 223..378 | 100 | <- | Minus |
X | 18099506..18099711 | 17..222 | 100 | | Minus |
X | 18098393..18098511 | 956..1074 | 98 | <- | Minus |
X | 18098579..18098800 | 734..955 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:49 Download gff for
BO15464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17993320..17993475 | 223..378 | 100 | <- | Minus |
arm_X | 17992426..17992544 | 956..1074 | 98 | <- | Minus |
arm_X | 17992612..17992833 | 734..955 | 100 | <- | Minus |
arm_X | 17992901..17993255 | 379..733 | 100 | <- | Minus |
arm_X | 17993539..17993744 | 17..222 | 100 | | Minus |
BO15464.pep Sequence
Translation from 16 to 1090
> BO15464.pep
MNKVGKHIQSGIGGAPNAALSTAALLGTPLEATNGAGSTSTTNVFNSIMS
FLPDNRPITSLHIVEDFERCPKNFSAISRTYDQDSDADLWRDYSLFGRQN
TRYLCLSKSEGLPEYVVETLQVISDKTPPPKEFSQVSRTADSDQKAWRKR
QLIYKLSKRGTVTQAVTDIILCSKLKAAPDGFKLAGDINGVLICYKTSAI
PVRLSPPVPGGGLPAPATCEVEQALNRLNLQGQRNSRGPLPQPPTEHHDY
EEIQANYQINSPQRPAPPRPAGVGSGGGHGTYGGTGTLGTYTELEGVPFV
MDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLERQILCTMKSSASKNPF
FKASFLDH
BO15464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7192-PD | 352 | CG7192-PD | 1..352 | 1..352 | 1844 | 100 | Plus |
CG7192-PB | 352 | CG7192-PB | 1..352 | 1..352 | 1844 | 100 | Plus |
CG7192-PA | 352 | CG7192-PA | 1..352 | 1..352 | 1844 | 100 | Plus |