Clone Sequence Records
BO15465.3prime Sequence
826 bp (821 high quality bases) assembled on 2006-05-30
> BO15465.3prime
ATGGTCTAGAAAGCTTGCAACGAAATACGACGCCAGTTGTCCCATCTTAT
CCTTGGCCACTCGACTGCCACGCACCCCGCCCCCAGCATTAGGTCCACCG
CCAGCCGTAACCGCTCCTCCGGAGCCAAAAGCCGCCCCGCCCATTCCGCC
ACCGCCTCGACCTGCCTTGCCGCCACGGAAGCCGCCGCCACTGCGAACTG
GTCTGGATGCCACCGCCCGATGCTTCTCGACCAAGTGCGAGAAGTCTGCG
GAGCAGAAGATGCAGCCGCTCTTCTCCTCGCTTCCGTCCTTGAACTTGCT
CTTGTCCGACTTGTAGACCACATTCACCTGCTGGGCGCCACACTCCTGGC
ACTTGGCCTCTTCCACCGTGATCTTGGTGGCTCCCTTGAAGCAGTTGATG
ATCACGTCGCAGCGATTGCAGCCCAGCTTCCAGGTTGGCGCAAGCGTACA
ATCGAGCACCAGGACCCCGGTGGGGCACTCCACGCAGCTGGAGATGCCCA
GCGTGTTCAGCGAGTGCGGGCAGTTGGCGTTCGTGCAGGTGTTGCAGCCC
CCCAAGTGGGGCATGTCGCTGAACGGCGGATGGTTGTAACAGTACGGGCA
GAACGGATACGAACGCCCCTTCACGCCAGTGGAGAAAGCCAGCAGATCAA
AGTCGTCCAGCGGGCACTTGAACTCGCGATACACCTTCACATTGCCAATG
GGCAGGGCGTATGTCTCATCGCAATGAGAGCAGTGCAATCTCGCCGGTTT
GGTCTGTATGTACTTCATGTAGCGCCTACACTTGCCGCAGCGCGAGTGCG
CCTTGCCCGACTCGGCCAGCGGCGAA
BO15465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3458-PA | 2628 | Top3beta-RA | 1819..2625 | 825..19 | 4035 | 100 | Minus |
| CG32745-PB | 471 | CG32745-RB | 265..404 | 618..479 | 700 | 100 | Minus |
| CG32745-PB | 471 | CG32745-RB | 191..244 | 748..695 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 2078..2884 | 825..19 | 4035 | 100 | Minus |
| Top3beta-RA | 2963 | CG3458-RA | 2078..2884 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6284974..6285370 | 360..756 | 1985 | 100 | Plus |
| X | 23542271 | X | 6284550..6284892 | 19..361 | 1715 | 100 | Plus |
| X | 23542271 | X | 6280300..6280562 | 479..748 | 1160 | 97 | Plus |
| X | 23542271 | X | 6285432..6285503 | 754..825 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:46:52 has no hits.
BO15465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:39 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1820..2628 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:00 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1820..2628 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:16 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 2076..2884 | 19..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:25 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 2076..2884 | 19..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:25 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6284550..6284890 | 19..359 | 100 | <- | Plus |
| X | 6284974..6285367 | 360..753 | 100 | <- | Plus |
| X | 6285432..6285503 | 754..826 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:16 Download gff for
BO15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6178583..6178923 | 19..359 | 100 | <- | Plus |
| arm_X | 6179007..6179400 | 360..753 | 100 | <- | Plus |
| arm_X | 6179465..6179536 | 754..826 | 98 | | Plus |
BO15465.5prime Sequence
920 bp (776 high quality bases) assembled on 2006-05-29
> BO15465.5prime
GAAGTTATCAGTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCT
CGCTGGCGGCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCC
AAGCGTGGCACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTT
TCGGAACGAGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATG
TCATGTCGCTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGAT
CCCATCCAGCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAA
GCAGAACATGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATC
TGGTGCTCTGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAG
GTGATGGACGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGT
GACATACCGTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAG
CCATGGAGACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGAC
GCCCGGCAGGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCA
AACGAAGTTCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCT
CCTACGGTCCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCAC
GACGACATCCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCT
CGCCGGCCAGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCA
AGAAGGACATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACAAGAAG
GCCACTGTGGAGAGCGTGGCCAGCAAGGAGGCCTACAAGAGCAAACACAG
GCACTGACCCCGTCAAACTG
BO15465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3458-PA | 2628 | Top3beta-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..1165 | 16..920 | 4455 | 99.6 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..1165 | 16..920 | 4455 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6286822..6287570 | 855..107 | 3745 | 100 | Minus |
| X | 23542271 | X | 6287640..6287732 | 108..16 | 465 | 100 | Minus |
| X | 23542271 | X | 6286430..6286482 | 907..856 | 215 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:01:39 has no hits.
BO15465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:41 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1..906 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:01 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1..906 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:19 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1165 | 16..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:38 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1165 | 16..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:38 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6286416..6286482 | 856..920 | 94 | <- | Minus |
| X | 6286822..6287569 | 108..855 | 100 | <- | Minus |
| X | 6287641..6287732 | 16..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:19 Download gff for
BO15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6180449..6180515 | 856..920 | 94 | <- | Minus |
| arm_X | 6180855..6181602 | 108..855 | 100 | <- | Minus |
| arm_X | 6181674..6181765 | 16..107 | 100 | | Minus |
BO15465.complete Sequence
2659 bp assembled on 2006-10-11
GenBank Submission: FJ633482
> BO15465.complete
GAAGTTATCAGTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCT
CGCTGGCGGCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCC
AAGCGTGGCACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTT
TCGGAACGAGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATG
TCATGTCGCTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGAT
CCCATCCAGCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAA
GCAGAACATGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATC
TGGTGCTCTGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAG
GTGATGGACGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGT
GACATACCGTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAG
CCATGGAGACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGAC
GCCCGGCAGGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCA
AACGAAGTTCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCT
CCTACGGTCCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCAC
GACGACATCCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCT
CGCCGGCCAGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCA
AGAAGGACATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACAAGAAG
GCCACTGTGGAGAGCGTGGCCAGCAAGGAGGCCTACAAGAGCAAACCACA
GGCACTGAACACCGTCGAACTGATGCGTATCTGCAGCTCCGGACTGGGCA
TCGGACCCTTCCAGGCGATGCAGATAGCTGAGCGCCTGTACACGCAGGGC
TACATCAGCTATCCGCGAACAGAGACCAATCAGTATCCGACTAACTTCGA
TCTGCCGGCCGTGCTGCACGTGCTGAAGCCATCGGCGGACTTCGGTGAGG
AGGCGCGCTCCATTTTGGGCGACATTCAGACGCCGCGAAAGGGCAAGGAT
GCCGGCGACCATCCACCCATCACGCCAATGAAACTGGGCAACCGCAGTGA
CTTCGATCGCGACACCTGGCGTGTCTACGAGTTCATCTGCCGGCACTTCA
TGGGCACGGTGTCGAGGGATCTTAAGTACCGCGTGACGACGGCAAAGCTG
AGTGTTGGCATGGAGACATTCAGTTGCACGGCCAGTGTGCTGATCGATGC
CGGTTTCACCAAGGTGATGACGTGGTCGGCCTTCGGCAAGGACGAACCCC
AGCCGCCGTTCGTTCAGGGCACTCAGGTGGCCATCAACGATGTGCGACTT
ATCGAAAGCCAGACAGGACCGCCGGATTATCTCACCGAATCGGAGCTAAT
CACACTGATGGAGGAGCACGGCATCGGGACGGATGCCTCCATACCGGTGC
ACATCAACAACATCTGCCAGCGCAACTATGTGCACATTGAGAACGGTCGC
AAGCTGATGCCAACGACGCTGGGCATTGTGCTGGTCCACGGCTATCAGAA
GATCGATCCGGAACTGGTGCTGCCCACCATGCGAACGGAGGTGGAGCGCA
TGCTGACACTGATTGCCCAGGGATCGGCTAACTTTCAGGATGTTCTGCGA
CACGCCATCAAGATTTTCAAGCTGAAGTTTATGTACTTTGTGAAGAACAT
CGACAGCATGGACGCACTGTTTGAGGTATCCTTCTCGCCGCTGGCCGAGT
CGGGCAAGGCGCACTCGCGCTGCGGCAAGTGTAGGCGCTACATGAAGTAC
ATACAGACCAAACCGGCGAGATTGCACTGCTCTCATTGCGATGAGACATA
CGCCCTGCCCATTGGCAATGTGAAGGTGTATCGCGAGTTCAAGTGCCCGC
TGGACGACTTTGATCTGCTGGCTTTCTCCACTGGCGTGAAGGGGCGTTCG
TATCCGTTCTGCCCGTACTGTTACAACCATCCGCCGTTCAGCGACATGCC
CCACTTGGGGGGCTGCAACACCTGCACGAACGCCAACTGCCCGCACTCGC
TGAACACGCTGGGCATCTCCAGCTGCGTGGAGTGCCCCACCGGGGTCCTG
GTGCTCGATTGTACGCTTGCGCCAACCTGGAAGCTGGGCTGCAATCGCTG
CGACGTGATCATCAACTGCTTCAAGGGAGCCACCAAGATCACGGTGGAAG
AGGCCAAGTGCCAGGAGTGTGGCGCCCAGCAGGTGAATGTGGTCTACAAG
TCGGACAAGAGCAAGTTCAAGGACGGAAGCGAGGAGAAGAGCGGCTGCAT
CTTCTGCTCCGCAGACTTCTCGCACTTGGTCGAGAAGCATCGGGCGGTGG
CATCCAGACCAGTTCGCAGTGGCGGCGGCTTCCGTGGCGGCAAGGCAGGT
CGAGGCGGTGGCGGAATGGGCGGGGCGGCTTTTGGCTCCGGAGGAGCGGT
TACGGCTGGCGGTGGACCTAATGCTGGGGGCGGGGTGCGTGGCAGTCGAG
TGGCCAAGGATAAGATGGGACAACTGGCGTCGTATTTCGTTGCAAGCTTT
CTAGACCAT
BO15465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 2628 | CG3458-PB | 1..2625 | 17..2641 | 13125 | 100 | Plus |
| Top3beta-RA | 2628 | CG3458-PA | 1..2625 | 17..2641 | 13125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..2884 | 16..2641 | 13130 | 100 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..2884 | 16..2641 | 13130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6285432..6286482 | 1906..856 | 5255 | 100 | Minus |
| X | 23542271 | X | 6286822..6287570 | 855..107 | 3745 | 100 | Minus |
| X | 23542271 | X | 6284974..6285370 | 2300..1904 | 1985 | 100 | Minus |
| X | 23542271 | X | 6284550..6284892 | 2641..2299 | 1715 | 100 | Minus |
| X | 23542271 | X | 6280300..6280562 | 2181..1912 | 1160 | 97 | Minus |
| X | 23542271 | X | 6280575..6280756 | 1856..1675 | 835 | 97.3 | Minus |
| X | 23542271 | X | 6287640..6287732 | 108..16 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:30 has no hits.
BO15465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:57 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 1..2628 | 17..2644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:01 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 233..2858 | 16..2641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:46 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 260..2884 | 17..2643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:58 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 233..2858 | 16..2641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:03 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 260..2884 | 17..2643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:03 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6287641..6287731 | 17..107 | 100 | | Minus |
| X | 6284547..6284890 | 2301..2643 | 99 | <- | Minus |
| X | 6284974..6285367 | 1907..2300 | 100 | <- | Minus |
| X | 6285432..6286482 | 856..1906 | 100 | <- | Minus |
| X | 6286822..6287569 | 108..855 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:46 Download gff for
BO15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6181674..6181764 | 17..107 | 100 | | Minus |
| arm_X | 6178580..6178923 | 2301..2643 | 99 | <- | Minus |
| arm_X | 6179007..6179400 | 1907..2300 | 100 | <- | Minus |
| arm_X | 6179465..6180515 | 856..1906 | 100 | <- | Minus |
| arm_X | 6180855..6181602 | 108..855 | 100 | <- | Minus |
BO15465.pep Sequence
Translation from 16 to 2659
> BO15465.pep
MKSVLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGS
VHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRK
FLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAH
FSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQ
DRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQLLAGQPE
VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTV
ELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVL
HVLKPSADFGEEARSILGDIQTPRKGKDAGDHPPITPMKLGNRSDFDRDT
WRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV
MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEE
HGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPEL
VLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKFMYFVKNIDSMDA
LFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIG
NVKVYREFKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGC
NTCTNANCPHSLNTLGISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIIN
CFKGATKITVEEAKCQECGAQQVNVVYKSDKSKFKDGSEEKSGCIFCSAD
FSHLVEKHRAVASRPVRSGGGFRGGKAGRGGGGMGGAAFGSGGAVTAGGG
PNAGGGVRGSRVAKDKMGQLASYFVASFLDH
BO15465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-PB | 875 | CG3458-PB | 1..875 | 1..875 | 4698 | 100 | Plus |
| Top3beta-PA | 875 | CG3458-PA | 1..875 | 1..875 | 4698 | 100 | Plus |
| Top3alpha-PA | 1250 | CG10123-PA | 29..636 | 5..612 | 934 | 35.9 | Plus |
