Clone BO15469 Report

Search the DGRC for BO15469

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCul-3-RC
Protein status:BO15469.pep: validated full length
Sequenced Size:2353

Clone Sequence Records

BO15469.3prime Sequence

806 bp (721 high quality bases) assembled on 2006-05-29

> BO15469.3prime
ATGGTCTAGAAAGCTTGCGGCCAAGTAGTTGTACACTTTGCGATCTTCCG
GCGATCGTTGCAGATACTCGCGCTCGATTAGGCCCTCAATGCGCTTTTTG
ATAAACACGGGCGAGGGCAAGAAACGCGACTTTAGCTGCGACGTCACATC
TGATACTAGCAAGTTGTGAGCCAGACGCTTGCGGGCCTTCATTATGCGCA
CAATAGCCGCTTCGATCTCGTGCTTACGATCCTCGTCGACCTTTCCGCGC
GTTTCCTTACGCTCTGGCTCTGATTCTCCCTTGGCGGCTACCGTTTGTAT
CTTCACCCTGTGGAACTTGGAGTTGAAGGCGTCGTTTACGTAAAACTCAT
CCGTGGGCTCAATGTCCTTAGTTTTCGTTTTAGAATTGCGTACTAACAAA
CGCTGAGCGGGTTTGCCCATGGACAACGATTGTAGTGCTCGGACGAGCTC
CCGTTCCGGTATATCGGTCTCCTGGTGTATGTCATCGTAGGTGAGCACGT
CGCGGTTATTAAACAGCAGTAGCACACACATCTGGTACGTGGACACTTGC
AATATGTGCTTGCGTGTGGTGGTGGGCACCCCACAGCCGCTTGAACTGGA
GCTGGGTGCATCTTTATCCTTTTCACTTTCAACTGCCTTGCGGCCATAAA
ACACAGCGTTGATATAGGCGGTTCCCATTTGTGGCTGTAACGTCATTTGA
CGTCCTGAGTGCTTATTTAGATAGAAGTTCTTGAAAATGTCAAAGGCTTC
ACGCGGAGCGGCGGGTATATTGCAATTCGGAGTTGCGGTCTGTGTGGGCC
AAAAAC

BO15469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11861-PC 2322 gft-RC 1532..2319 806..19 3865 99.6 Minus
CG11861-PA 2322 gft-RA 1532..2319 806..19 3865 99.6 Minus
CG11861-PB 2322 gft-RB 1532..2319 806..19 3865 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RF 3558 CG42615-RF 2423..3210 806..19 3895 99.6 Minus
Cul3-RE 3272 CG11861-RB 2137..2924 806..19 3895 99.6 Minus
Cul3-RC 3037 CG11861-RA 1902..2689 806..19 3895 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15266795..15267021 307..533 1135 100 Plus
2L 23513712 2L 15266377..15266526 19..168 750 100 Plus
2L 23513712 2L 15267145..15267292 532..679 725 99.3 Plus
2L 23513712 2L 15266596..15266736 169..309 705 100 Plus
2L 23513712 2L 15267352..15267471 674..793 555 97.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:21:51 has no hits.

BO15469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:47 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PC 1532..2322 15..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:07 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PB 1532..2322 15..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:59:10 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RC 1902..2694 13..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:02 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul3-RC 1902..2694 13..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:02 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15267353..15267467 675..789 97 <- Plus
2L 15267530..15267546 790..806 100   Plus
2L 15266372..15266526 13..168 98 <- Plus
2L 15266596..15266734 169..307 100 <- Plus
2L 15266796..15267019 308..531 100 <- Plus
2L 15267145..15267287 532..674 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:59:10 Download gff for BO15469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15266372..15266526 13..168 98 <- Plus
arm_2L 15266596..15266734 169..307 100 <- Plus
arm_2L 15266796..15267019 308..531 100 <- Plus
arm_2L 15267145..15267287 532..674 100 <- Plus
arm_2L 15267353..15267467 675..789 97 <- Plus
arm_2L 15267530..15267546 790..806 100   Plus

BO15469.5prime Sequence

735 bp (734 high quality bases) assembled on 2006-05-29

> BO15469.5prime
GAAGTTATCAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAAGGAGG
GCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTG
GAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAA
GAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACA
TGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTC
GTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCT
GCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGA
CATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTAT
GTGCAGCAGCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTT
CAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGA
AGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCAT
CTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTC
GCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGG
CGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCT
GGCGTTTACATCAAGAAAGTGGAAGCGCGCATCAC

BO15469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11861-PC 2322 gft-RC 1..719 17..735 3595 100 Plus
CG11861-PA 2322 gft-RA 1..719 17..735 3595 100 Plus
CG11861-PB 2322 gft-RB 1..719 17..735 3595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 3272 CG11861-RB 605..1324 16..735 3600 100 Plus
Cul3-RC 3037 CG11861-RA 370..1089 16..735 3600 100 Plus
Cul3-RD 4332 CG11861-RC 881..1600 16..735 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15268819..15269205 462..76 1935 100 Minus
2L 23513712 2L 15268483..15268760 735..458 1390 100 Minus
2L 23513712 2L 15270904..15270965 77..16 310 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:35:40 has no hits.

BO15469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:48 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PC 1..719 17..735 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:09 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PB 1..719 17..735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:31 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RD 876..1600 9..735 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:22 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul3-RD 876..1600 9..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:22 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15268483..15268757 461..735 100 <- Minus
2L 15268821..15269204 77..460 100 <- Minus
2L 15270905..15270970 9..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:31 Download gff for BO15469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15268483..15268757 461..735 100 <- Minus
arm_2L 15268821..15269204 77..460 100 <- Minus
arm_2L 15270905..15270970 9..76 94   Minus

BO15469.complete Sequence

2353 bp assembled on 2006-10-11

GenBank Submission: FJ633484

> BO15469.complete
GAAGTTATCAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAAGGAGG
GCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTG
GAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAA
GAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACA
TGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTC
GTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCT
GCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGA
CATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTAT
GTGCAGCAGCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTT
CAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGA
AGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCAT
CTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTC
GCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGG
CGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCT
GGCGTTTACATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCTTCCCG
GGCAGCGCTGTATCTCGATAAGGATACGGAGCCCCGCATTGTGCGCGTGG
TCGAAGAAGAGCTGATCAAAAAGCACATGCGACCCATTGTTGAAATGGAG
AACTCGGGCGTGGTGTACATGATCAAGAACTCAAAGACCGAGGATCTGGC
CTGCACATATAAGCTTTTCTCGCGCCTGAAGGAGGAGGGTCTCAAGGTGA
TAGCGGACACAATGTCGGCATATCTGCGAGAGCAAGGACGCATGCTGGTT
AAGGAAGAAGAAAACGGCAACACGAATCCCATAACATTCGTGCAGAACTT
GCTGGATCTCAAGGACCGCTTCGACCAGTTTCTGGTGCACTCGTTCGCCA
ACGATCGCATATTCAAAAACGTCATCTCATCCGATTTTGAACATTTCTTG
AACCTAAATAACAAATCCCCGGAGTATCTATCGCTATTCATCGATGACAA
ACTGAAAAAGGGTGGCAAGGGAATGAGCGAACAGGAAATTGAGTCCATCT
TGGATAAGACAATGGTTCTCTTCCGTTTCCTATTGGAGAAAGATGTCTTT
GAGCGCTATTACAAGACGCATTTAGCCAAGAGATTGCTGCTGAACAAATC
AGTCTCTGATGATTTCGAGAAGAATATGATATCAAAACTAAAGACTGAAT
GCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAAGATATGTCA
GTCTCCAATACGATCATGGATGAGTTTAAGAACTTTGTAAATAATAACAA
TTTATCCCTTGGCGGTGTGGAGCTAACGGTACGCATACTAACCACTGGTT
TTTGGCCCACACAGACAGCAACTCCGAACTGCAATATACCCGCCGCTCCG
CGTGAAGCCTTTGACATTTTCAAGAACTTCTATCTAAATAAGCACTCAGG
ACGTCAATTGACGTTACAGCCACAAATGGGAACCGCCTATATCAACGCTG
TGTTTTATGGCCGCAAGGCAGTTGAAAGTGAAAAGGATAAAGATGCACCC
AGCTCCAGTTCAAGCGGCTGTGGGGTGCCCACCACCACACGCAAGCACAT
ATTGCAAGTGTCCACGTACCAGATGTGTGTGCTACTGCTGTTTAATAACC
GCGACGTGCTCACCTACGATGACATACACCAGGAGACCGATATACCGGAA
CGGGAGCTCGTCCGAGCACTACAATCGTTGTCCATGGGCAAACCCGCTCA
GCGTTTGTTAGTACGCAATTCTAAAACGAAAACTAAGGACATTGAGCCCA
CGGATGAGTTTTACGTAAACGACGCCTTCAACTCCAAGTTCCACAGGGTG
AAGATACAAACGGTAGCCGCCAAGGGAGAATCAGAGCCAGAGCGTAAGGA
AACGCGCGGAAAGGTCGACGAGGATCGTAAGCACGAGATCGAAGCGGCTA
TTGTGCGCATAATGAAGGCCCGCAAGCGTCTGGCTCACAACTTGCTAGTA
TCAGATGTGACGTCGCAGCTAAAGTCGCGTTTCTTGCCCTCGCCCGTGTT
TATCAAAAAGCGCATTGAGGGCCTAATCGAGCGCGAGTATCTGCAACGAT
CGCCGGAAGATCGCAAAGTGTACAACTACTTGGCCGCAAGCTTTCTAGAC
CAT

BO15469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 2322 CG42616-PE 1..2319 17..2335 11595 100 Plus
Cul3-RC 2322 CG42616-PC 1..2319 17..2335 11595 100 Plus
Cul3-RD 2322 CG42616-PD 1..2319 17..2335 11595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 3272 CG11861-RB 605..2924 16..2335 11600 100 Plus
Cul3-RC 3037 CG11861-RA 370..2689 16..2335 11600 100 Plus
Cul3-RD 4332 CG11861-RC 881..3200 16..2335 11600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15267991..15268760 1227..458 3835 99.9 Minus
2L 23513712 2L 15268819..15269205 462..76 1935 100 Minus
2L 23513712 2L 15266795..15267021 2047..1821 1135 100 Minus
2L 23513712 2L 15267530..15267702 1564..1392 865 100 Minus
2L 23513712 2L 15267763..15267933 1393..1223 855 100 Minus
2L 23513712 2L 15266377..15266526 2335..2186 750 100 Minus
2L 23513712 2L 15267145..15267292 1822..1675 725 99.3 Minus
2L 23513712 2L 15266596..15266736 2185..2045 705 100 Minus
2L 23513712 2L 15267352..15267471 1680..1561 600 100 Minus
2L 23513712 2L 15270904..15270965 77..16 310 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:45:19 has no hits.

BO15469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:59 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 1..2322 17..2339 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:03 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 600..2929 9..2341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:44 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RD 882..3200 17..2337 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:01 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 600..2929 9..2341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:58 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
Cul3-RD 882..3200 17..2337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:58 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15267145..15267287 1680..1822 100 <- Minus
2L 15267353..15267467 1565..1679 100 <- Minus
2L 15267530..15267700 1394..1564 100 <- Minus
2L 15267763..15267933 1223..1393 100 <- Minus
2L 15266375..15266526 2186..2337 98 <- Minus
2L 15266596..15266734 2047..2185 100 <- Minus
2L 15266796..15267019 1823..2046 100 <- Minus
2L 15267996..15268757 461..1222 100 <- Minus
2L 15268821..15269204 77..460 100 <- Minus
2L 15270905..15270964 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:44 Download gff for BO15469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15267530..15267700 1394..1564 100 <- Minus
arm_2L 15266375..15266526 2186..2337 98 <- Minus
arm_2L 15266596..15266734 2047..2185 100 <- Minus
arm_2L 15266796..15267019 1823..2046 100 <- Minus
arm_2L 15267145..15267287 1680..1822 100 <- Minus
arm_2L 15267353..15267467 1565..1679 100 <- Minus
arm_2L 15267763..15267933 1223..1393 100 <- Minus
arm_2L 15267996..15268757 461..1222 100 <- Minus
arm_2L 15268821..15269204 77..460 100 <- Minus
arm_2L 15270905..15270964 17..76 100   Minus

BO15469.pep Sequence

Translation from 16 to 2353

> BO15469.pep
MNLRGNPPKKEGKMRIRAFPASMDEKYVETIWASLKNAIQEIQKKNNSGL
SFEQLYRNAYNMVLHKHGNRLYYGLREVVSEHLEHKVRADVLEALHSNFL
PKLNQAWTDHQTSMVMIRDILMYMDRVYVQQREVDNVYNLGLILFRDQVV
RYSEIQKALREKLLGMVMEERHGEAINHLAIKNACSMLITLGINSRTVYE
EDFEKPFLAQSAAFYKFESQNFLAENNAGVYIKKVEARITEESSRAALYL
DKDTEPRIVRVVEEELIKKHMRPIVEMENSGVVYMIKNSKTEDLACTYKL
FSRLKEEGLKVIADTMSAYLREQGRMLVKEEENGNTNPITFVQNLLDLKD
RFDQFLVHSFANDRIFKNVISSDFEHFLNLNNKSPEYLSLFIDDKLKKGG
KGMSEQEIESILDKTMVLFRFLLEKDVFERYYKTHLAKRLLLNKSVSDDF
EKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNFVNNNNLSLGG
VELTVRILTTGFWPTQTATPNCNIPAAPREAFDIFKNFYLNKHSGRQLTL
QPQMGTAYINAVFYGRKAVESEKDKDAPSSSSSGCGVPTTTRKHILQVST
YQMCVLLLFNNRDVLTYDDIHQETDIPERELVRALQSLSMGKPAQRLLVR
NSKTKTKDIEPTDEFYVNDAFNSKFHRVKIQTVAAKGESEPERKETRGKV
DEDRKHEIEAAIVRIMKARKRLAHNLLVSDVTSQLKSRFLPSPVFIKKRI
EGLIEREYLQRSPEDRKVYNYLAASFLDH

BO15469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-PE 773 CG11861-PB 1..773 1..773 3959 100 Plus
Cul3-PC 773 CG11861-PA 1..773 1..773 3959 100 Plus
Cul3-PD 773 CG11861-PC 1..773 1..773 3959 100 Plus
Cul3-PF 934 CG42615-PF 178..934 17..773 3864 99.9 Plus
Cul4-PB 821 CG8711-PB 112..821 22..773 1159 37 Plus