Clone BO15472 Report

Search the DGRC for BO15472

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptttv-RA
Protein status:BO15472.pep: Imported from assembly
Sequenced Size:2314

Clone Sequence Records

BO15472.3prime Sequence

898 bp (828 high quality bases) assembled on 2006-05-30

> BO15472.3prime
ATGGTCTAGAAAGCTTGCGCTGCCGACCAACTCGATCTGGCGGTATTTCT
TGCGCAAATTGGAAACTGGATCACGATACAGCATGGGATCCATGCGCAAA
TTGGAACGTATCAGCGGCATATAGCCAAACACGGCCGCAAAGGTATTCAG
GCAGCTCTGGCGCTGGATAAAGTGGTCGGGATCGTTCCAGGGCGAACGAC
CCGTCTCTCGATCCTTGTAGCCCTTGCGCTGCGTCACCTTGATCGGCGGC
TTTCTGGTCACGTGCGAGACCAGCAGGTTCATTAGGATGTCCTCGCAGTT
GGAGGACTGCTGTACAGTCTTAAGTAGCAGCAACGACAGCCAATTGGTGT
ACAAGTAGTTGTAGTAGCGGTGGTAGAATGCCGCCCCAGTTAGCACAATC
GAATAGTAGTTTGTCCACTTGGACGTATAACCCCAGGCATTCTTGGAATC
ATCCCAGAAGTGAGCTCTCGCCGGATAGCCAACGATGCGCTCGGGAAAAT
CCCGCCACACCGTGTAGGCAAAGTCCAGTTCATCCGTATTGAGTATGGCA
TCTTCATCCAGCGACAGAACGGCATCCGTCTGAATCTCATCGTAGGGCAG
GAATCGTTGTGATATGCTAGGTCGTCCCTCAGTCGTCTGGCTTGTGGGTC
CAGCTCCCTGACTCCTCGTGCTGCCCCCCAGGGAAATCACGTGCAAGGGT
ATGTGGCTGGTGGGGGGCCAGCGTTTCTTCAACGGCAACGGCCGATCGGC
TGCCCAAAGGACAAGGATCCGCTCCACGAACTGGCTCTTCGTGATGGTCC
TGACTAGCTTGTAGAGCGCTGCATTCGGTCCCAGGGCGGCACCAATCTGC
ACATAGATAACCGCCGTGTAGTTGTGACGCGGCTCCGCACCCATCGAG

BO15472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10117-PA 2283 ttv-RA 1401..2280 898..19 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RC 2351 CG10117-RC 374..1253 898..19 4400 100 Minus
ttv-RB 6899 CG10117-RB 2326..3205 898..19 4400 100 Minus
ttv-RA 3994 CG10117-RA 2017..2896 898..19 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14583304..14583631 769..442 1640 100 Minus
2R 25286936 2R 14583692..14584010 443..125 1595 100 Minus
2R 25286936 2R 14583117..14583246 898..769 650 100 Minus
2R 25286936 2R 14584117..14584223 125..19 535 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:13:07 has no hits.

BO15472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:53 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-PA 1401..2283 18..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:17 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10117-PA 1401..2283 18..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:38 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 2017..2900 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:51 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 2017..2900 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:51 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14583117..14583246 769..898 100 -> Minus
2R 14583305..14583631 442..768 100 -> Minus
2R 14583694..14584010 125..441 100 -> Minus
2R 14584118..14584227 13..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:38 Download gff for BO15472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10471623..10471732 13..124 97   Minus
arm_2R 10470622..10470751 769..898 100 -> Minus
arm_2R 10470810..10471136 442..768 100 -> Minus
arm_2R 10471199..10471515 125..441 100 -> Minus

BO15472.5prime Sequence

928 bp (765 high quality bases) assembled on 2006-05-29

> BO15472.5prime
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACATTTCCCCGCCAACAAGAAGTATCTGCTGGC
CTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAACT
CGCTCTTTCATTTGCACAACGACGCGACATGGTCCTGGTCACAACCTGTC
GCCACGGGAAAAGTTGGCGGAAGCTGCA

BO15472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10117-PA 2283 ttv-RA 1..754 17..770 3770 100 Plus
CG10117-PA 2283 ttv-RA 755..856 770..871 510 100 Plus
CG10117-PA 2283 ttv-RA 857..914 871..928 240 96.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 6899 CG10117-RB 926..1839 17..928 4490 99.6 Plus
ttv-RA 3994 CG10117-RA 617..1530 17..928 4490 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14527192..14527998 17..822 3955 99.6 Plus
2R 25286936 2R 14552911..14553025 815..928 495 97.4 Plus
Blast to na_te.dros performed on 2015-02-02 08:03:34 has no hits.

BO15472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:54 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-PA 1..913 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:18 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10117-PA 1..913 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:18 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 611..1529 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:12 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 611..1529 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:12 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14527186..14527991 9..815 99 -> Plus
2R 14552912..14553024 816..927 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:18 Download gff for BO15472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10414691..10415496 9..815 99 -> Plus
arm_2R 10440417..10440529 816..927 97   Plus

BO15472.complete Sequence

2314 bp assembled on 2008-08-14

GenBank Submission: FJ638740

> BO15472.complete
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTGCACAACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCTGCAGGATAATCGCTGCGACGAGG
ACAACCGGGAATACGACAGATACGACTACGAGACCTTACTGCAAAATTCC
ACTTTCTGCTTGGTGCCGCGCGGACGTCGTTTGGGTTCCTTTAGATTCCT
CGAAGCCTTGCAGGCTGGTTGCATTCCCGTACTATTGTCCAATGCCTGGG
TGTTGCCGTTTGAATCGAAAATCGATTGGAAGCAGGCCGCCATTTGGGCC
GATGAGCGGCTCCTGCTGCAGGTACCCGACATCGTGCGCTCCATACCGGC
GGAACGCATCTTCGCCCTCCGCCAGCAGACGCAGGTCCTGTGGGAACGCT
ACTTCGGATCCATTGAGAAAATCGTCTTCACAACATTCGAGATCATACGC
GAACGTTTGCCGGATTATCCGGTGCGAAGCAGCCTGGTTTGGAACAGCTC
GCCGGGCGCCCTGCTCACGTTGCCCACCTTTGCCGACAGCTCAAGGTACA
TGCCGTTTCTGCTCAACTCGATGGGTGCGGAGCCGCGTCACAACTACACG
GCGGTTATCTATGTGCAGATTGGTGCCGCCCTGGGACCGAATGCAGCGCT
CTACAAGCTAGTCAGGACCATCACGAAGAGCCAGTTCGTGGAGCGGATCC
TTGTCCTTTGGGCAGCCGATCGGCCGTTGCCGTTGAAGAAACGCTGGCCC
CCCACCAGCCACATACCCTTGCACGTGATTTCCCTGGGGGGCAGCACGAG
GAGTCAGGGAGCTGGACCCACAAGCCAGACGACTGAGGGACGACCTAGCA
TATCACAACGATTCCTGCCCTACGATGAGATTCAGACGGATGCCGTTCTG
TCGCTGGATGAAGATGCCATACTCAATACGGATGAACTGGACTTTGCCTA
CACGGTGTGGCGGGATTTTCCCGAGCGCATCGTTGGCTATCCGGCGAGAG
CTCACTTCTGGGATGATTCCAAGAATGCCTGGGGTTATACGTCCAAGTGG
ACAAACTACTATTCGATTGTGCTAACTGGGGCGGCATTCTACCACCGCTA
CTACAACTACTTGTACACCAATTGGCTGTCGTTGCTGCTACTTAAGACTG
TACAGCAGTCCTCCAACTGCGAGGACATCCTAATGAACCTGCTGGTCTCG
CACGTGACCAGAAAGCCGCCGATCAAGGTGACGCAGCGCAAGGGCTACAA
GGATCGAGAGACGGGTCGTTCGCCCTGGAACGATCCCGACCACTTTATCC
AGCGCCAGAGCTGCCTGAATACCTTTGCGGCCGTGTTTGGCTATATGCCG
CTGATACGTTCCAATTTGCGCATGGATCCCATGCTGTATCGTGATCCAGT
TTCCAATTTGCGCAAGAAATACCGCCAGATCGAGTTGGTCGGCAGCGCAA
GCTTTCTAGACCAT

BO15472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 2283 CG10117-PB 1..2280 17..2296 11400 100 Plus
ttv-RA 2283 CG10117-PA 1..2280 17..2296 11400 100 Plus
ttv-RC 900 CG10117-PC 1..897 1400..2296 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 6899 CG10117-RB 926..3205 17..2296 11400 100 Plus
ttv-RA 3994 CG10117-RA 617..2896 17..2296 11400 100 Plus
ttv-RC 2351 CG10117-RC 128..1253 1171..2296 5630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14527192..14527998 17..823 4005 99.8 Plus
2R 25286936 2R 14583304..14583631 1546..1873 1640 100 Plus
2R 25286936 2R 14583692..14584010 1872..2190 1595 100 Plus
2R 25286936 2R 14552911..14553064 816..969 770 100 Plus
2R 25286936 2R 14583094..14583246 1394..1546 765 100 Plus
2R 25286936 2R 14563257..14563387 1043..1173 655 100 Plus
2R 25286936 2R 14564952..14565073 1170..1291 610 100 Plus
2R 25286936 2R 14582918..14583025 1290..1397 540 100 Plus
2R 25286936 2R 14584117..14584223 2190..2296 535 100 Plus
2R 25286936 2R 14563008..14563085 967..1044 390 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:01 has no hits.

BO15472.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:09 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 616..2905 9..2302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:37 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 617..2896 17..2298 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:24 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 622..2901 17..2298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:09 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 617..2896 17..2298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:09 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14583694..14584010 1874..2190 100 -> Plus
2R 14584118..14584223 2191..2298 98   Plus
2R 14527192..14527991 17..816 100 -> Plus
2R 14552912..14553064 817..969 100 -> Plus
2R 14563011..14563085 970..1044 100 -> Plus
2R 14563259..14563385 1045..1171 100 -> Plus
2R 14564954..14565073 1172..1291 100 -> Plus
2R 14582920..14583023 1292..1395 100 -> Plus
2R 14583096..14583246 1396..1546 100 -> Plus
2R 14583305..14583631 1547..1873 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:37 Download gff for BO15472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10470425..10470528 1292..1395 100 -> Plus
arm_2R 10440417..10440569 817..969 100 -> Plus
arm_2R 10450516..10450590 970..1044 100 -> Plus
arm_2R 10450764..10450890 1045..1171 100 -> Plus
arm_2R 10452459..10452578 1172..1291 100 -> Plus
arm_2R 10414697..10415496 17..816 100 -> Plus
arm_2R 10470601..10470751 1396..1546 100 -> Plus
arm_2R 10470810..10471136 1547..1873 100 -> Plus
arm_2R 10471199..10471515 1874..2190 100 -> Plus
arm_2R 10471623..10471728 2191..2298 98   Plus

BO15472.pep Sequence

Translation from 16 to 2314

> BO15472.pep
MQAKKRYILVFVSCAFLAYAYFGGYRLKVSPLRPRRAQHESAKDGGVQPH
EQLPSFLGAHDMQELQLLQSNQSKSLDSSKHLVTRKPDCRMETCFDFTRC
YDRFLVYIYPPEPLNSLGAAPPTSANYQKILTAIQESRYYTSDPTAACLF
VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYA
ENSLGFDAGEAILAKASMGVLQLRHGFDVSIPLFHKQFPLRAGATGTVQS
NNFPANKKYLLAFKGKRYVHGIGSETRNSLFHLHNGRDMVLVTTCRHGKS
WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQA
GCIPVLLSNAWVLPFESKIDWKQAAIWADERLLLQVPDIVRSIPAERIFA
LRQQTQVLWERYFGSIEKIVFTTFEIIRERLPDYPVRSSLVWNSSPGALL
TLPTFADSSRYMPFLLNSMGAEPRHNYTAVIYVQIGAALGPNAALYKLVR
TITKSQFVERILVLWAADRPLPLKKRWPPTSHIPLHVISLGGSTRSQGAG
PTSQTTEGRPSISQRFLPYDEIQTDAVLSLDEDAILNTDELDFAYTVWRD
FPERIVGYPARAHFWDDSKNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLY
TNWLSLLLLKTVQQSSNCEDILMNLLVSHVTRKPPIKVTQRKGYKDRETG
RSPWNDPDHFIQRQSCLNTFAAVFGYMPLIRSNLRMDPMLYRDPVSNLRK
KYRQIELVGSASFLDH

BO15472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-PB 760 CG10117-PB 1..760 1..760 4043 100 Plus
ttv-PA 760 CG10117-PA 1..760 1..760 4043 100 Plus
ttv-PC 299 CG10117-PC 1..299 462..760 1597 100 Plus
Ext2-PB 717 CG8433-PB 58..714 56..755 883 32.6 Plus
botv-PA 972 CG15110-PA 707..967 470..751 474 37.1 Plus