Clone Sequence Records
BO15472.3prime Sequence
898 bp (828 high quality bases) assembled on 2006-05-30
> BO15472.3prime
ATGGTCTAGAAAGCTTGCGCTGCCGACCAACTCGATCTGGCGGTATTTCT
TGCGCAAATTGGAAACTGGATCACGATACAGCATGGGATCCATGCGCAAA
TTGGAACGTATCAGCGGCATATAGCCAAACACGGCCGCAAAGGTATTCAG
GCAGCTCTGGCGCTGGATAAAGTGGTCGGGATCGTTCCAGGGCGAACGAC
CCGTCTCTCGATCCTTGTAGCCCTTGCGCTGCGTCACCTTGATCGGCGGC
TTTCTGGTCACGTGCGAGACCAGCAGGTTCATTAGGATGTCCTCGCAGTT
GGAGGACTGCTGTACAGTCTTAAGTAGCAGCAACGACAGCCAATTGGTGT
ACAAGTAGTTGTAGTAGCGGTGGTAGAATGCCGCCCCAGTTAGCACAATC
GAATAGTAGTTTGTCCACTTGGACGTATAACCCCAGGCATTCTTGGAATC
ATCCCAGAAGTGAGCTCTCGCCGGATAGCCAACGATGCGCTCGGGAAAAT
CCCGCCACACCGTGTAGGCAAAGTCCAGTTCATCCGTATTGAGTATGGCA
TCTTCATCCAGCGACAGAACGGCATCCGTCTGAATCTCATCGTAGGGCAG
GAATCGTTGTGATATGCTAGGTCGTCCCTCAGTCGTCTGGCTTGTGGGTC
CAGCTCCCTGACTCCTCGTGCTGCCCCCCAGGGAAATCACGTGCAAGGGT
ATGTGGCTGGTGGGGGGCCAGCGTTTCTTCAACGGCAACGGCCGATCGGC
TGCCCAAAGGACAAGGATCCGCTCCACGAACTGGCTCTTCGTGATGGTCC
TGACTAGCTTGTAGAGCGCTGCATTCGGTCCCAGGGCGGCACCAATCTGC
ACATAGATAACCGCCGTGTAGTTGTGACGCGGCTCCGCACCCATCGAG
BO15472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10117-PA | 2283 | ttv-RA | 1401..2280 | 898..19 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RC | 2351 | CG10117-RC | 374..1253 | 898..19 | 4400 | 100 | Minus |
ttv-RB | 6899 | CG10117-RB | 2326..3205 | 898..19 | 4400 | 100 | Minus |
ttv-RA | 3994 | CG10117-RA | 2017..2896 | 898..19 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14583304..14583631 | 769..442 | 1640 | 100 | Minus |
2R | 25286936 | 2R | 14583692..14584010 | 443..125 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 14583117..14583246 | 898..769 | 650 | 100 | Minus |
2R | 25286936 | 2R | 14584117..14584223 | 125..19 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:13:07 has no hits.
BO15472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:53 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-PA | 1401..2283 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:17 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10117-PA | 1401..2283 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:38 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 2017..2900 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:51 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 2017..2900 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:51 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14583117..14583246 | 769..898 | 100 | -> | Minus |
2R | 14583305..14583631 | 442..768 | 100 | -> | Minus |
2R | 14583694..14584010 | 125..441 | 100 | -> | Minus |
2R | 14584118..14584227 | 13..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:38 Download gff for
BO15472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10471623..10471732 | 13..124 | 97 | | Minus |
arm_2R | 10470622..10470751 | 769..898 | 100 | -> | Minus |
arm_2R | 10470810..10471136 | 442..768 | 100 | -> | Minus |
arm_2R | 10471199..10471515 | 125..441 | 100 | -> | Minus |
BO15472.5prime Sequence
928 bp (765 high quality bases) assembled on 2006-05-29
> BO15472.5prime
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACATTTCCCCGCCAACAAGAAGTATCTGCTGGC
CTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAACT
CGCTCTTTCATTTGCACAACGACGCGACATGGTCCTGGTCACAACCTGTC
GCCACGGGAAAAGTTGGCGGAAGCTGCA
BO15472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10117-PA | 2283 | ttv-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
CG10117-PA | 2283 | ttv-RA | 755..856 | 770..871 | 510 | 100 | Plus |
CG10117-PA | 2283 | ttv-RA | 857..914 | 871..928 | 240 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 6899 | CG10117-RB | 926..1839 | 17..928 | 4490 | 99.6 | Plus |
ttv-RA | 3994 | CG10117-RA | 617..1530 | 17..928 | 4490 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14527192..14527998 | 17..822 | 3955 | 99.6 | Plus |
2R | 25286936 | 2R | 14552911..14553025 | 815..928 | 495 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:03:34 has no hits.
BO15472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:54 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-PA | 1..913 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:18 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10117-PA | 1..913 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:18 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 611..1529 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:12 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 611..1529 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:12 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14527186..14527991 | 9..815 | 99 | -> | Plus |
2R | 14552912..14553024 | 816..927 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:18 Download gff for
BO15472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10414691..10415496 | 9..815 | 99 | -> | Plus |
arm_2R | 10440417..10440529 | 816..927 | 97 | | Plus |
BO15472.complete Sequence
2314 bp assembled on 2008-08-14
GenBank Submission: FJ638740
> BO15472.complete
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTGCACAACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCTGCAGGATAATCGCTGCGACGAGG
ACAACCGGGAATACGACAGATACGACTACGAGACCTTACTGCAAAATTCC
ACTTTCTGCTTGGTGCCGCGCGGACGTCGTTTGGGTTCCTTTAGATTCCT
CGAAGCCTTGCAGGCTGGTTGCATTCCCGTACTATTGTCCAATGCCTGGG
TGTTGCCGTTTGAATCGAAAATCGATTGGAAGCAGGCCGCCATTTGGGCC
GATGAGCGGCTCCTGCTGCAGGTACCCGACATCGTGCGCTCCATACCGGC
GGAACGCATCTTCGCCCTCCGCCAGCAGACGCAGGTCCTGTGGGAACGCT
ACTTCGGATCCATTGAGAAAATCGTCTTCACAACATTCGAGATCATACGC
GAACGTTTGCCGGATTATCCGGTGCGAAGCAGCCTGGTTTGGAACAGCTC
GCCGGGCGCCCTGCTCACGTTGCCCACCTTTGCCGACAGCTCAAGGTACA
TGCCGTTTCTGCTCAACTCGATGGGTGCGGAGCCGCGTCACAACTACACG
GCGGTTATCTATGTGCAGATTGGTGCCGCCCTGGGACCGAATGCAGCGCT
CTACAAGCTAGTCAGGACCATCACGAAGAGCCAGTTCGTGGAGCGGATCC
TTGTCCTTTGGGCAGCCGATCGGCCGTTGCCGTTGAAGAAACGCTGGCCC
CCCACCAGCCACATACCCTTGCACGTGATTTCCCTGGGGGGCAGCACGAG
GAGTCAGGGAGCTGGACCCACAAGCCAGACGACTGAGGGACGACCTAGCA
TATCACAACGATTCCTGCCCTACGATGAGATTCAGACGGATGCCGTTCTG
TCGCTGGATGAAGATGCCATACTCAATACGGATGAACTGGACTTTGCCTA
CACGGTGTGGCGGGATTTTCCCGAGCGCATCGTTGGCTATCCGGCGAGAG
CTCACTTCTGGGATGATTCCAAGAATGCCTGGGGTTATACGTCCAAGTGG
ACAAACTACTATTCGATTGTGCTAACTGGGGCGGCATTCTACCACCGCTA
CTACAACTACTTGTACACCAATTGGCTGTCGTTGCTGCTACTTAAGACTG
TACAGCAGTCCTCCAACTGCGAGGACATCCTAATGAACCTGCTGGTCTCG
CACGTGACCAGAAAGCCGCCGATCAAGGTGACGCAGCGCAAGGGCTACAA
GGATCGAGAGACGGGTCGTTCGCCCTGGAACGATCCCGACCACTTTATCC
AGCGCCAGAGCTGCCTGAATACCTTTGCGGCCGTGTTTGGCTATATGCCG
CTGATACGTTCCAATTTGCGCATGGATCCCATGCTGTATCGTGATCCAGT
TTCCAATTTGCGCAAGAAATACCGCCAGATCGAGTTGGTCGGCAGCGCAA
GCTTTCTAGACCAT
BO15472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 2283 | CG10117-PB | 1..2280 | 17..2296 | 11400 | 100 | Plus |
ttv-RA | 2283 | CG10117-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
ttv-RC | 900 | CG10117-PC | 1..897 | 1400..2296 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 6899 | CG10117-RB | 926..3205 | 17..2296 | 11400 | 100 | Plus |
ttv-RA | 3994 | CG10117-RA | 617..2896 | 17..2296 | 11400 | 100 | Plus |
ttv-RC | 2351 | CG10117-RC | 128..1253 | 1171..2296 | 5630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14527192..14527998 | 17..823 | 4005 | 99.8 | Plus |
2R | 25286936 | 2R | 14583304..14583631 | 1546..1873 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 14583692..14584010 | 1872..2190 | 1595 | 100 | Plus |
2R | 25286936 | 2R | 14552911..14553064 | 816..969 | 770 | 100 | Plus |
2R | 25286936 | 2R | 14583094..14583246 | 1394..1546 | 765 | 100 | Plus |
2R | 25286936 | 2R | 14563257..14563387 | 1043..1173 | 655 | 100 | Plus |
2R | 25286936 | 2R | 14564952..14565073 | 1170..1291 | 610 | 100 | Plus |
2R | 25286936 | 2R | 14582918..14583025 | 1290..1397 | 540 | 100 | Plus |
2R | 25286936 | 2R | 14584117..14584223 | 2190..2296 | 535 | 100 | Plus |
2R | 25286936 | 2R | 14563008..14563085 | 967..1044 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:01 has no hits.
BO15472.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:09 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 616..2905 | 9..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:37 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 617..2896 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:24 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 622..2901 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:09 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 617..2896 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:09 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14583694..14584010 | 1874..2190 | 100 | -> | Plus |
2R | 14584118..14584223 | 2191..2298 | 98 | | Plus |
2R | 14527192..14527991 | 17..816 | 100 | -> | Plus |
2R | 14552912..14553064 | 817..969 | 100 | -> | Plus |
2R | 14563011..14563085 | 970..1044 | 100 | -> | Plus |
2R | 14563259..14563385 | 1045..1171 | 100 | -> | Plus |
2R | 14564954..14565073 | 1172..1291 | 100 | -> | Plus |
2R | 14582920..14583023 | 1292..1395 | 100 | -> | Plus |
2R | 14583096..14583246 | 1396..1546 | 100 | -> | Plus |
2R | 14583305..14583631 | 1547..1873 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:37 Download gff for
BO15472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10470425..10470528 | 1292..1395 | 100 | -> | Plus |
arm_2R | 10440417..10440569 | 817..969 | 100 | -> | Plus |
arm_2R | 10450516..10450590 | 970..1044 | 100 | -> | Plus |
arm_2R | 10450764..10450890 | 1045..1171 | 100 | -> | Plus |
arm_2R | 10452459..10452578 | 1172..1291 | 100 | -> | Plus |
arm_2R | 10414697..10415496 | 17..816 | 100 | -> | Plus |
arm_2R | 10470601..10470751 | 1396..1546 | 100 | -> | Plus |
arm_2R | 10470810..10471136 | 1547..1873 | 100 | -> | Plus |
arm_2R | 10471199..10471515 | 1874..2190 | 100 | -> | Plus |
arm_2R | 10471623..10471728 | 2191..2298 | 98 | | Plus |
BO15472.pep Sequence
Translation from 16 to 2314
> BO15472.pep
MQAKKRYILVFVSCAFLAYAYFGGYRLKVSPLRPRRAQHESAKDGGVQPH
EQLPSFLGAHDMQELQLLQSNQSKSLDSSKHLVTRKPDCRMETCFDFTRC
YDRFLVYIYPPEPLNSLGAAPPTSANYQKILTAIQESRYYTSDPTAACLF
VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYA
ENSLGFDAGEAILAKASMGVLQLRHGFDVSIPLFHKQFPLRAGATGTVQS
NNFPANKKYLLAFKGKRYVHGIGSETRNSLFHLHNGRDMVLVTTCRHGKS
WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQA
GCIPVLLSNAWVLPFESKIDWKQAAIWADERLLLQVPDIVRSIPAERIFA
LRQQTQVLWERYFGSIEKIVFTTFEIIRERLPDYPVRSSLVWNSSPGALL
TLPTFADSSRYMPFLLNSMGAEPRHNYTAVIYVQIGAALGPNAALYKLVR
TITKSQFVERILVLWAADRPLPLKKRWPPTSHIPLHVISLGGSTRSQGAG
PTSQTTEGRPSISQRFLPYDEIQTDAVLSLDEDAILNTDELDFAYTVWRD
FPERIVGYPARAHFWDDSKNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLY
TNWLSLLLLKTVQQSSNCEDILMNLLVSHVTRKPPIKVTQRKGYKDRETG
RSPWNDPDHFIQRQSCLNTFAAVFGYMPLIRSNLRMDPMLYRDPVSNLRK
KYRQIELVGSASFLDH
BO15472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-PB | 760 | CG10117-PB | 1..760 | 1..760 | 4043 | 100 | Plus |
ttv-PA | 760 | CG10117-PA | 1..760 | 1..760 | 4043 | 100 | Plus |
ttv-PC | 299 | CG10117-PC | 1..299 | 462..760 | 1597 | 100 | Plus |
Ext2-PB | 717 | CG8433-PB | 58..714 | 56..755 | 883 | 32.6 | Plus |
botv-PA | 972 | CG15110-PA | 707..967 | 470..751 | 474 | 37.1 | Plus |