Clone Sequence Records
BO15473.3prime Sequence
787 bp (737 high quality bases) assembled on 2006-05-29
> BO15473.3prime
ATGGTCTAGAAAGCTTGCACGACATTCCCAGACCTTTACTGTTTGATCTA
CGCTACCGCTAATTACGTACGGATGCGCTTTGTGAAAATCTATGGAGGTG
CAGAAATGCTGATGCGCGTATAGCGTCTTCATGCATCGCTTGTTGCGCAA
GTCCCACACCCGAATGGTCTTGTCATCGCTGGCCGACACCAAGTATTTGC
CACCAGGATGGAATGCCAGGCCACGCACCCAATTGTCATGGCCACTCAGG
GTAAGCAGGCACAGGCCGACGCTCACGTCCCAAATGCGAATGGTTTTGTC
GCGAGAGCCGGAGGCCAGGAACGGGCCCTGGTGATGGCCCTTCTTGTTGT
CTGCTCCGGCTGCCTCGTTTATCGCAGAGGCTGCGGCTTCCGGCGCCCAG
GCAATGCACTCCACAGTATGCTCATGATCGCGTAATTCAACCTTGCAGTC
TTTTGAATTCGTCAACCAAACACGTATTGTCTGATCATTTGAGCATGTGG
CAAAGATGCTGCCTTCGATGTGCACTCGCACCATTCGCACCCACTCTCGA
TGGCCTGTGTAGGTTTTCACACAGTAGCCTGTGGCCACCTCCCACATTTT
AATAGTGCGGTCCCGGGATGCAGAGAGTACATAATCTCCGGCCGGCACAA
AGGCCACCGACGAGACATTGTGATCGTGACCATGCATAGTTTTGATACAC
TCGTAGCTCTGCTGGAAATCCCACAATTTGATGGATAAGTCCGCGCTGCA
GGAGGCCAAAAGCTTGCCCTGGGCATCAAATGCGACA
BO15473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8440-PA | 1236 | Lis-1-RA | 465..1233 | 787..19 | 3845 | 100 | Minus |
| CG8440-PC | 1236 | Lis-1-RC | 465..1233 | 787..19 | 3845 | 100 | Minus |
| CG8440-PD | 1236 | Lis-1-RD | 465..1233 | 787..19 | 3845 | 100 | Minus |
| CG8440-PE | 1236 | Lis-1-RE | 465..1233 | 787..19 | 3845 | 100 | Minus |
| CG8440-PB | 1236 | Lis-1-RB | 465..1233 | 787..19 | 3845 | 100 | Minus |
| CG8440-PF | 1236 | Lis-1-RF | 465..1233 | 787..19 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1675 | CG8440-RG | 589..1357 | 787..19 | 3845 | 100 | Minus |
| Lis-1-RF | 3292 | CG8440-RF | 1094..1862 | 787..19 | 3845 | 100 | Minus |
| Lis-1-RB | 2775 | CG8440-RB | 577..1345 | 787..19 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16183184..16183537 | 443..90 | 1770 | 100 | Minus |
| 2R | 25286936 | 2R | 16182736..16182914 | 756..578 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 16182982..16183120 | 578..440 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 16183601..16183673 | 91..19 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:41:36 has no hits.
BO15473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:55 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-PB | 466..1236 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:19 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8440-PF | 466..1236 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:07 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 578..1351 | 11..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:18 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 578..1351 | 11..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:18 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16182643..16182673 | 756..786 | 100 | -> | Minus |
| 2R | 16182737..16182914 | 578..755 | 100 | -> | Minus |
| 2R | 16182983..16183118 | 442..577 | 100 | -> | Minus |
| 2R | 16183186..16183537 | 90..441 | 100 | -> | Minus |
| 2R | 16183603..16183679 | 11..89 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:07 Download gff for
BO15473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12070488..12070623 | 442..577 | 100 | -> | Minus |
| arm_2R | 12070148..12070178 | 756..786 | 100 | -> | Minus |
| arm_2R | 12070242..12070419 | 578..755 | 100 | -> | Minus |
| arm_2R | 12070691..12071042 | 90..441 | 100 | -> | Minus |
| arm_2R | 12071108..12071184 | 11..89 | 94 | | Minus |
BO15473.5prime Sequence
882 bp (729 high quality bases) assembled on 2006-05-29
> BO15473.5prime
GAAGTTATCAGTCGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGG
AGCTTAACCAAGCGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGAC
TCATTGGAGACCTTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAA
GAAATTTGGCGGACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGC
AGAAGAAAGTGATGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAG
GTCATCGAGGGGGCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGAT
ACCTCGGCCGCCAGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAA
CGAGGGTAATTTTCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAA
GACGCCACCATTAGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAG
CCTGAAGGGACACACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGG
GCAAGCTTTTGGCCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGAT
TTCCAGCAGAGCTACGAGTGTATCAAAACTATGCATGGTCACGATCACAA
TGTCTCGTCGGTGGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCAT
CCCGGGACCGCACTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTG
AAAACCTACACAGGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACAT
CGAAGGCAGCATCTTTGCCACATGCTCAAATGATCAGACAATACGTGTTT
GGTTGACGAATTCAAAAGACTGCAAGGTTGAATTACGCGATCATGAGCAT
ACTGTGGAGTGCATTGCCTGGGCGCCCGGAGC
BO15473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8440-PA | 1236 | Lis-1-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG8440-PC | 1236 | Lis-1-RC | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG8440-PD | 1236 | Lis-1-RD | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG8440-PE | 1236 | Lis-1-RE | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG8440-PB | 1236 | Lis-1-RB | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG8440-PF | 1236 | Lis-1-RF | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1675 | CG8440-RG | 125..984 | 17..876 | 4300 | 100 | Plus |
| Lis-1-RF | 3292 | CG8440-RF | 630..1489 | 17..876 | 4300 | 100 | Plus |
| Lis-1-RB | 2775 | CG8440-RB | 113..972 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16182158..16182462 | 55..359 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 16182736..16182914 | 512..690 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16182516..16182673 | 355..512 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16182982..16183120 | 690..828 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 16183184..16183235 | 825..876 | 260 | 100 | Plus |
| 2R | 25286936 | 2R | 16182053..16182090 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:29:46 has no hits.
BO15473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:57 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-PB | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:21 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8440-PF | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:58 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..978 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:07 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..978 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:07 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16182983..16183118 | 691..826 | 100 | -> | Plus |
| 2R | 16183186..16183241 | 827..882 | 96 | | Plus |
| 2R | 16182517..16182673 | 356..512 | 100 | -> | Plus |
| 2R | 16182737..16182914 | 513..690 | 100 | -> | Plus |
| 2R | 16182049..16182090 | 9..54 | 91 | -> | Plus |
| 2R | 16182158..16182458 | 55..355 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:58 Download gff for
BO15473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12069554..12069595 | 9..54 | 91 | -> | Plus |
| arm_2R | 12069663..12069963 | 55..355 | 100 | -> | Plus |
| arm_2R | 12070022..12070178 | 356..512 | 100 | -> | Plus |
| arm_2R | 12070242..12070419 | 513..690 | 100 | -> | Plus |
| arm_2R | 12070488..12070623 | 691..826 | 100 | -> | Plus |
| arm_2R | 12070691..12070746 | 827..882 | 96 | | Plus |
BO15473.complete Sequence
1267 bp (1267 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633485
> BO15473.complete
GAAGTTATCAGTCGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGG
AGCTTAACCAAGCGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGAC
TCATTGGAGACCTTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAA
GAAATTTGGCGGACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGC
AGAAGAAAGTGATGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAG
GTCATCGAGGGGGCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGAT
ACCTCGGCCGCCAGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAA
CGAGGGTAATTTTCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAA
GACGCCACCATTAGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAG
CCTGAAGGGACACACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGG
GCAAGCTTTTGGCCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGAT
TTCCAGCAGAGCTACGAGTGTATCAAAACTATGCATGGTCACGATCACAA
TGTCTCGTCGGTGGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCAT
CCCGGGACCGCACTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTG
AAAACCTACACAGGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACAT
CGAAGGCAGCATCTTTGCCACATGCTCAAATGATCAGACAATACGTGTTT
GGTTGACGAATTCAAAAGACTGCAAGGTTGAATTACGCGATCATGAGCAT
ACTGTGGAGTGCATTGCCTGGGCGCCGGAAGCCGCAGCCTCTGCGATAAA
CGAGGCAGCCGGAGCAGACAACAAGAAGGGCCATCACCAGGGCCCGTTCC
TGGCCTCCGGCTCTCGCGACAAAACCATTCGCATTTGGGACGTGAGCGTC
GGCCTGTGCCTGCTTACCCTGAGTGGCCATGACAATTGGGTGCGTGGCCT
GGCATTCCATCCTGGTGGCAAATACTTGGTGTCGGCCAGCGATGACAAGA
CCATTCGGGTGTGGGACTTGCGCAACAAGCGATGCATGAAGACGCTATAC
GCGCATCAGCATTTCTGCACCTCCATAGATTTTCACAAAGCGCATCCGTA
CGTAATTAGCGGTAGCGTAGATCAAACAGTAAAGGTCTGGGAATGTCGTG
CAAGCTTTCTAGACCAT
BO15473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1236 | CG8440-PG | 1..1233 | 17..1249 | 6165 | 100 | Plus |
| Lis-1-RF | 1236 | CG8440-PF | 1..1233 | 17..1249 | 6165 | 100 | Plus |
| Lis-1-RB | 1236 | CG8440-PB | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1675 | CG8440-RG | 125..1357 | 17..1249 | 6165 | 100 | Plus |
| Lis-1-RF | 3292 | CG8440-RF | 630..1862 | 17..1249 | 6165 | 100 | Plus |
| Lis-1-RB | 2775 | CG8440-RB | 113..1345 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16183184..16183537 | 825..1178 | 1770 | 100 | Plus |
| 2R | 25286936 | 2R | 16182158..16182462 | 55..359 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 16182736..16182914 | 512..690 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16182516..16182673 | 355..512 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16182982..16183120 | 690..828 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 16183601..16183673 | 1177..1249 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 16182053..16182090 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:38 has no hits.
BO15473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:40 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RD | 1..1236 | 17..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:54 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RD | 246..1488 | 9..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:12 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 113..1345 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:40 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RD | 246..1488 | 9..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:37 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 113..1345 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:37 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16182158..16182458 | 55..355 | 100 | -> | Plus |
| 2R | 16182517..16182673 | 356..512 | 100 | -> | Plus |
| 2R | 16182737..16182914 | 513..690 | 100 | -> | Plus |
| 2R | 16182983..16183118 | 691..826 | 100 | -> | Plus |
| 2R | 16182053..16182090 | 17..54 | 100 | -> | Plus |
| 2R | 16183186..16183537 | 827..1178 | 100 | -> | Plus |
| 2R | 16183603..16183673 | 1179..1251 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:12 Download gff for
BO15473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12069558..12069595 | 17..54 | 100 | -> | Plus |
| arm_2R | 12069663..12069963 | 55..355 | 100 | -> | Plus |
| arm_2R | 12070022..12070178 | 356..512 | 100 | -> | Plus |
| arm_2R | 12070242..12070419 | 513..690 | 100 | -> | Plus |
| arm_2R | 12070488..12070623 | 691..826 | 100 | -> | Plus |
| arm_2R | 12070691..12071042 | 827..1178 | 100 | -> | Plus |
| arm_2R | 12071108..12071178 | 1179..1251 | 97 | | Plus |
BO15473.pep Sequence
Translation from 16 to 1267
> BO15473.pep
MKMVLSQRQREELNQAIADYLGSNGYADSLETFRKEADLSTEVEKKFGGL
LEKKWTSVIRLQKKVMELEAKLTEAEKEVIEGAPTKNKRTPGEWIPRPPE
KFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHT
DSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVA
FVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIF
ATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGA
DNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPG
GKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS
VDQTVKVWECRASFLDH
BO15473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-PG | 411 | CG8440-PG | 1..411 | 1..411 | 2190 | 100 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 1..411 | 1..411 | 2190 | 100 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 1..411 | 1..411 | 2190 | 100 | Plus |
| Lis-1-PA | 411 | CG8440-PA | 1..411 | 1..411 | 2190 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 65..358 | 101..409 | 421 | 29.2 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 123..226 | 312..414 | 211 | 40.4 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 123..226 | 312..414 | 211 | 40.4 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 123..226 | 312..414 | 211 | 40.4 | Plus |
| Lis-1-PA | 411 | CG8440-PA | 123..226 | 312..414 | 211 | 40.4 | Plus |
