Clone BO15476 Report

Search the DGRC for BO15476

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptmib2-RA
Protein status:BO15476.pep: validated full length
Sequenced Size:3181

Clone Sequence Records

BO15476.3prime Sequence

778 bp (732 high quality bases) assembled on 2006-05-30

> BO15476.3prime
ATGGTCTAGAAAGCTTGCGTACAGGTTGATCTTCTTGAGTATTGTCTTGC
GACACATGTGGCATGTGCGGAGCGTTTCGGCACAATGGGAGCACGCGCCG
TGCCCGCACAGGAAGGCCACATCCCTTTTTCGCTCCATGCAAATACCGCA
GAAGTGCGACTCCTCAAACTCCAGCACTTTGTTCTCCAGATAGCGAAGTA
GATCCCCGGACGGTAGGCGAGTGGGGTCACTAGGTGACGACGTGGACGTG
GGCAGGGCCACCACTCGGCCGCTGACCGTCAATCGCCGCTCGATCGCCAC
GGCACAGCGGAGACACTTTTTCATTCGGATGCCGCACTCCTCGCAGGCGA
TCTGATGCTGACACGGCTCAAAGCGCACCATCGGCAGGATCTCATTGCAC
ACAATGCACTCATGGGGACCGGGGACGATCACCGGACTGGTACTGGGTCC
CGCCGCTCCGGCTTCCAACGCGGTACTGCTCGAGCTAGTGGTAACCGGAG
GCTTGGGCGCCTTCTTGCGCGGTGCCACCTGTGGAGAGACGTTTTGCGGT
GTTGCGTCGGAGTTCAGTTTCTTTACGCCCGGCGAGGCGGAGGGCGTGGA
TGGAGATGCTCCAACTCCAATGGCTGGGATATCGTTTGGCTTTGGCATTA
GTTCAAATGTCTGGCGCTGCGGTGGTGGGGGTGCTGCAACGCTTCCAGGT
CCGGCTCCATTGGATTCAGCTCCAGCAGACGCAGAGCTCTCCTCACCGTC
GGCTGATCCCTGCGGACACTTCCAAAGC

BO15476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17492-PA 3150 mib2-RA 2407..3147 759..19 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 2625..3383 778..19 3775 99.9 Minus
mib2-RB 3899 CG17492-RB 2787..3545 778..19 3775 99.9 Minus
mib2-RA 4164 CG17492-RA 2984..3742 778..19 3775 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19040361..19041119 778..19 3750 99.9 Minus
Blast to na_te.dros performed on 2015-01-30 18:30:39 has no hits.

BO15476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:59 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-PA 2389..3150 16..778 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:25 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17492-PA 2389..3150 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:02 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 2984..3746 15..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:17 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 2984..3746 15..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:12:17 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19040361..19041123 15..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:02 Download gff for BO15476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19040361..19041123 15..778 99   Minus

BO15476.5prime Sequence

923 bp (833 high quality bases) assembled on 2006-05-29

> BO15476.5prime
GAAGTTATCAGTCGACATGCGAGCCTCCATTCCGCCCGGCATTCGAGTGG
TGCGCGGACCCAACTGGATCTGGTCGAATCAAGACGACGGAGAAGGTCAC
GTTGGAACCGTTTGCGAAATCGGACGTTGCGGATCGACACATTCGCCAGA
AAACACTGTCGTGGTCAACTGGGATTCCGGACACCGGACCAACTACCGTG
TGGGCTACCAAAACCAGTACGACTTGATAATTGTAGATAATGCTCAAGTT
GGAGTTCGTCACTCAAATGTTGTCTGCGATGGCTGTTCCAAGGCGGGTAT
CGCTGGCATAGTATTCAAGTGCGCCCAGTGTCCCAACTATCACCTATGCG
CCTATTGCTACGCAGAGGATCTGCACGATATTGAGCACCCGTTTATCCGC
TACACGACTCCCAACTCGCTGGGCGTGAGATTGCCCATGAGAAAAGGTGC
CAAGCGCATCCAGCTGCGAGGCATCTTTGTGGGTTCCAAAGTAGTGCGCG
GTCCTGACTGGGAGTGGAACGAACAGGACGGCGGAGAAGGCAGGACGGGT
CGGGTAATGGAAATCCGAGGCTGGGACAACGAATCGTGTCGCAGCGTGGC
CAACGTAGCGTGGGTAACCGGATCGACGAACGTCTACCGTCTAGGTCACA
AGGGAAACGTTGACCTCAAGTACATTACTGCCACGTGCGGTGGTCACTAC
TATAAGGACCACATGCCTGTTCTAGGTCAGACAGAGGAGTTGCAGCCGGT
GGCGCCCATGGTGAAGCCAAGCTTTTCCGTGGGCGACCGCGTCAAGGTTT
GCCTAGAGGTTGACGCCCTAATGAAATTGCAGCAGGCCCATGGCGGATGG
AATCCGCGCATGGTCGAGCATTTGTCCAAACTGGGCACAGTACACCGCAT
CACGGACAAGGGGGATATACGTG

BO15476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17492-PA 3150 mib2-RA 1..907 17..923 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 236..1143 16..923 4525 99.9 Plus
mib2-RB 3899 CG17492-RB 398..1305 16..923 4525 99.9 Plus
mib2-RA 4164 CG17492-RA 595..1502 16..923 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19038084..19038754 251..921 3340 99.9 Plus
2L 23513712 2L 19037802..19037972 82..252 855 100 Plus
2L 23513712 2L 19035798..19035865 16..83 340 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:54:35 has no hits.

BO15476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:00 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:26 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17492-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:06 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 588..1502 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:15 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 588..1502 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:15 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19035791..19035865 9..83 96 -> Plus
2L 19037804..19037971 84..251 100 -> Plus
2L 19038085..19038755 252..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:06 Download gff for BO15476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19035791..19035865 9..83 96 -> Plus
arm_2L 19037804..19037971 84..251 100 -> Plus
arm_2L 19038085..19038755 252..923 99   Plus

BO15476.complete Sequence

3181 bp assembled on 2006-10-11

GenBank Submission: FJ633486

> BO15476.complete
GAAGTTATCAGTCGACATGCGAGCCTCCATTCCGCCCGGCATTCGAGTGG
TGCGCGGACCCAACTGGATCTGGTCGAATCAAGACGACGGAGAAGGTCAC
GTTGGAACCGTTTGCGAAATCGGACGTTGCGGATCGACACATTCGCCAGA
AAACACTGTCGTGGTCAACTGGGATTCCGGACACCGGACCAACTACCGTG
TGGGCTACCAAAACCAGTACGACTTGATAATTGTAGATAATGCTCAAGTT
GGAGTTCGTCACTCAAATGTTGTCTGCGATGGCTGTTCCAAGGCGGGTAT
CGCTGGCATAGTATTCAAGTGCGCCCAGTGTCCCAACTATCACCTATGCG
CCTATTGCTACGCAGAGGATCTGCACGATATTGAGCACCCGTTTATCCGC
TACACGACTCCCAACTCGCTGGGCGTGAGATTGCCCATGAGAAAAGGTGC
CAAGCGCATCCAGCTGCGAGGCATCTTTGTGGGTTCCAAAGTAGTGCGCG
GTCCTGACTGGGAGTGGAACGAACAGGACGGCGGAGAAGGCAGGACGGGT
CGGGTAATGGAAATCCGAGGCTGGGACAACGAATCGTGTCGCAGCGTGGC
CAACGTAGCGTGGGTAACCGGATCGACGAACGTCTACCGTCTAGGTCACA
AGGGAAACGTTGACCTCAAGTACATTACTGCCACGTGCGGTGGTCACTAC
TATAAGGACCACATGCCTGTTCTAGGTCAGACAGAGGAGTTGCAGCCGGT
GGCGCCCATGGTGAAGCCAAGCTTTTCCGTGGGCGACCGCGTCAAGGTTT
GCCTAGAGGTTGACGCCCTAATGAAATTGCAGCAGGGCCATGGCGGATGG
AATCCGCGCATGGTCGAGCATTTGTCCAAACTGGGCACAGTACACCGCAT
CACGGACAAGGGGGATATACGTGTTCAGTATGAAAACTGTCCCAATCGAT
GGACCTTTCATCCCGCCGCACTCGTTAAGGTTGTCTCTTTTCGTGTCGGT
GACCTGGTCACCATCATCAACGATGCCAACAAAGTGCAGCAGCTGCAGAA
GGGTCACGGCGAATGGATAGAAATCATGCGACACGCCCTTGGAAAAATTT
GCAAGGTAGTGAAGGTGTACTCGGACGGTGACCTCCGCATCCAGCAGTTG
GACGACGGCTTCGAGTGGACCCTGAATCCGAAATGTGTCAAACTAGAGCG
TTCTCCTTTGGCAACAGCAGCTGAGCGCTCTAACAGTATGATGGACCTAA
GCCACCGACGCGCTGACCATGTAATGACACCGCTCTCTGGCCTCTCCGGT
AGTTCGGTTGCCGACAAGCTGGTGCGCGAGGCTGCCCAGGGCCATTTGGA
TTTCGTGCGGCAGTACCTGGACGTGAATCCCAGCCAGGTGGATGTGATGA
GTGGCGGCAAGGCTTGTATTCAGGTGGCCTCTCATCAGGGCTACGTCGAT
CTTGTCAGCTACCTCATCTCCAAGGGTGCCAACGTGAATGCGGTCGACAA
GGAAGGTGATTCAGCTCTGCACTACGCAGCCTTCGGCAATCAGCCGGCCA
CCATGAGAGTGCTGCTGCAGCACGGTGCTGAGGTGAACTTCCTAAACTCG
AGCCACTGCTCTGCACTGCACATCTGCGCGCACAAGAAAACGCCGCACTG
TGTGCGTGAGTTGCTGCAGCACAATGCCAACGTAAACATTCAGGATTCGT
ACGGGGATACGGCGCTTCACGACGCAATCGGCAAAGAGAATACGGAAGTT
GTGGAGTTGCTTTGTAATGCTCCGAATCTGGACTTTACGGTTAAGAATAA
TCGCGGCTTTAACGTGCTACACCATGCAGCGCTTAAAGGAAACGTGGTAG
CTGCTCGCCGTATCCTGTTGCTCTCCCGCCAGCTGGTCAATGTGCGCAAA
GACGATGGCTTTGCGGCTCTTCATTTGGCAGCCCTTAACGGTCATGCCCA
GGTTGTGGAAACGCTGGTCACTGAGGGCCAAGCGGAGTTAGATATACGCA
ATAATCGCCAACAGACGCCGTTCCTACTGGCCGTCTCCCAGGGCCATGCC
GGGGTAATCGAGCGACTCGTTCGCCTCTCCTGCGACGTGAATGCCAAGGA
TGAGGATGGCGACAATGCGATGCACTTGTGCGTCATTAAGAAGTCCAATC
TGCAGTCGGCCGCGGAGCCTCAGCCAGAGGAGGCTCCTGAGATTCACAAG
TTTTACCTGAGTCTAGTACACTCGAGCATTCGTCCTGAGGATCGTTTGAT
GTACAGTATATTGATCTATCTTTCGAGGGCCGGCTGCCGAGTGGAGCTGA
ACAACGCCAATGCAAGCATTTTTGAGTGGATAACGGACCGCCACATCAGG
CAACTGATTTTTGGGCAGCAGGGCGAAGCTGAATCGCTGCCTAGGAATCT
TCAAGCTTTGGAAGTGTCCGCAGGATCAGCCGACGGTGAGGAGAGCTCTG
CGTCTGCTGGAGCTGAATCCAATGGAGCCGGACCTGGAAGCGTTGCAGCA
CCCCCACCACCGCAGCGCCAGACATTTGAACTAATGCCAAAGCCAAACGA
TATCCCAGCCATTGGAGTTGGAGCATCTCCATCCACGCCCTCCGCCTCGC
CGGGCGTAAAGAAACTGAACTCCGACGCAACACCGCAAAACGTCTCTCCA
CAGGTGGCACCGCGCAAGAAGGCGCCCAAGCCTCCGGTTACCACTAGCTC
GAGCAGTACCGCGTTGGAAGCCGGAGCGGCGGGACCCAGTACCAGTCCGG
TGATCGTCCCCGGTCCCCATGAGTGCATTGTGTGCAATGAGATCCTGCCG
ATGGTGCGCTTTGAGCCGTGTCAGCATCAGATCGCCTGCGAGGAGTGCGG
CATCCGAATGAAAAAGTGTCTCCGCTGTGCCGTGGCGATCGAGCGGCGAT
TGACGGTCAGCGGCCGAGTGGTGGCCCTGCCCACGTCCACGTCGTCACCT
AGTGACCCCACTCGCCTACCGTCCGGGGATCTACTTCGCTATCTGGAGAA
CAAAGTGCTGGAGTTTGAGGAGTCGCACTTCTGCGGTATTTGCATGGAGC
GAAAAAGGGATGTGGCCTTCCTGTGCGGGCACGGCGCGTGCTCCCATTGT
GCCGAAACGCTCCGCACATGCCACATGTGTCGCAAGACAATACTCAAGAA
GATCAACCTGTACGCAAGCTTTCTAGACCAT

BO15476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3150 CG17492-PC 1..3147 17..3163 15735 100 Plus
mib2-RB 3150 CG17492-PB 1..3147 17..3163 15735 100 Plus
mib2-RA 3150 CG17492-PA 1..3147 17..3163 15735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 236..3383 16..3163 15740 100 Plus
mib2-RB 3899 CG17492-RB 398..3545 16..3163 15740 100 Plus
mib2-RA 4164 CG17492-RA 595..3742 16..3163 15740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19039041..19041119 1085..3163 10395 100 Plus
2L 23513712 2L 19038084..19038754 251..921 3355 100 Plus
2L 23513712 2L 19037802..19037972 82..252 855 100 Plus
2L 23513712 2L 19038815..19038979 921..1085 825 100 Plus
2L 23513712 2L 19035798..19035865 16..83 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:23:12 has no hits.

BO15476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:13 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 1..3150 17..3166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:05 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 512..3670 9..3167 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:06 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 596..3742 17..3165 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:14 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 512..3670 9..3167 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:20 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 596..3742 17..3165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:20 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19035799..19035865 17..83 100 -> Plus
2L 19037804..19037971 84..251 100 -> Plus
2L 19038085..19038754 252..921 100 -> Plus
2L 19038816..19038978 922..1084 100 -> Plus
2L 19039041..19041119 1085..3165 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:06 Download gff for BO15476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19035799..19035865 17..83 100 -> Plus
arm_2L 19037804..19037971 84..251 100 -> Plus
arm_2L 19038085..19038754 252..921 100 -> Plus
arm_2L 19038816..19038978 922..1084 100 -> Plus
arm_2L 19039041..19041119 1085..3165 99   Plus

BO15476.pep Sequence

Translation from 16 to 3181

> BO15476.pep
MRASIPPGIRVVRGPNWIWSNQDDGEGHVGTVCEIGRCGSTHSPENTVVV
NWDSGHRTNYRVGYQNQYDLIIVDNAQVGVRHSNVVCDGCSKAGIAGIVF
KCAQCPNYHLCAYCYAEDLHDIEHPFIRYTTPNSLGVRLPMRKGAKRIQL
RGIFVGSKVVRGPDWEWNEQDGGEGRTGRVMEIRGWDNESCRSVANVAWV
TGSTNVYRLGHKGNVDLKYITATCGGHYYKDHMPVLGQTEELQPVAPMVK
PSFSVGDRVKVCLEVDALMKLQQGHGGWNPRMVEHLSKLGTVHRITDKGD
IRVQYENCPNRWTFHPAALVKVVSFRVGDLVTIINDANKVQQLQKGHGEW
IEIMRHALGKICKVVKVYSDGDLRIQQLDDGFEWTLNPKCVKLERSPLAT
AAERSNSMMDLSHRRADHVMTPLSGLSGSSVADKLVREAAQGHLDFVRQY
LDVNPSQVDVMSGGKACIQVASHQGYVDLVSYLISKGANVNAVDKEGDSA
LHYAAFGNQPATMRVLLQHGAEVNFLNSSHCSALHICAHKKTPHCVRELL
QHNANVNIQDSYGDTALHDAIGKENTEVVELLCNAPNLDFTVKNNRGFNV
LHHAALKGNVVAARRILLLSRQLVNVRKDDGFAALHLAALNGHAQVVETL
VTEGQAELDIRNNRQQTPFLLAVSQGHAGVIERLVRLSCDVNAKDEDGDN
AMHLCVIKKSNLQSAAEPQPEEAPEIHKFYLSLVHSSIRPEDRLMYSILI
YLSRAGCRVELNNANASIFEWITDRHIRQLIFGQQGEAESLPRNLQALEV
SAGSADGEESSASAGAESNGAGPGSVAAPPPPQRQTFELMPKPNDIPAIG
VGASPSTPSASPGVKKLNSDATPQNVSPQVAPRKKAPKPPVTTSSSSTAL
EAGAAGPSTSPVIVPGPHECIVCNEILPMVRFEPCQHQIACEECGIRMKK
CLRCAVAIERRLTVSGRVVALPTSTSSPSDPTRLPSGDLLRYLENKVLEF
EESHFCGICMERKRDVAFLCGHGACSHCAETLRTCHMCRKTILKKINLYA
SFLDH

BO15476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-PC 1049 CG17492-PC 1..1049 1..1049 5568 100 Plus
mib2-PB 1049 CG17492-PB 1..1049 1..1049 5568 100 Plus
mib2-PA 1049 CG17492-PA 1..1049 1..1049 5568 100 Plus
mib1-PA 1226 CG5841-PA 109..1055 8..1042 1448 35 Plus
mib1-PB 1115 CG5841-PB 13..944 23..1042 1387 34.7 Plus