Clone Sequence Records
BO15478.3prime Sequence
867 bp (748 high quality bases) assembled on 2006-05-30
> BO15478.3prime
ATGGTCTAGAAAGCTTGCAAATATTTTAGCTAAGCTAGGCGTTCGCCGAA
ACGGATTCCACGAACTGGATGAAACGCTGCCAGCGGGTCGCGAACTAGAG
GATGTTTTCAGGTGGAGCTTGGGCTTGGCCGCAATACTTGTGGGACTGGG
AAATCCGGATGAAATGCCCGATGAACTGGCCGCCGATAGCGTTGATAATG
AGCCCTTCGACGACAATGGCTTCAAGTAGTTGCGATCCATGGGCGTTATC
ACTCTCAGCTCGAGTGTAGAGCCGCAGGATTGTATGAGCTGCACCACCTG
CTGATGGGAGTACCACTTCACGTCCACGCCGGCTATCTCGACTATGAAGT
CTCCCTCCTTGATGCCGCCAAGGTCTGCCAAAGAATTAATCTCAACGTGG
GCAATGATCACCGGAGCATCGCCGCGCACATGGAAGCCAAAGTTCTCAAA
CTCCTCCTTGTACAGATTGTATCCACCATCGTGCTCCTCGTCATCATCGT
TATCCAATGGGCACTTGTTGTCATTGCTGGGCACGCTGTGATACAGGGAG
GAACCTTTCTGGAGACGCACACATCTGGGCGCTGTCCAGTGGCGTCTCGC
CGAGAATATTGCAATCGGGCCGAGGCGCTTGAAGGGATCCTTAACCTTGT
GCGATGTGAAGTCGGGTCCGGTCAGGGATAACGTGAACTTCGAAGATGCT
TCTACCGATCGCTCTAGAAGATCGCCATCTTCGATATTTTTGGCTGAAGC
TTGCAGTCTGAACTTCTCGAGCTCCTCCTGCGATTTGGAGTGCACCTCCT
TCATGACTTCAGTCAGTGATGCCTTGTTCTTCAAGAACCGACACATCCGC
TGGAATCGCTGGGCTTC
BO15478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8497-PB | 2157 | Rhp-RB | 1306..2154 | 867..19 | 4220 | 99.8 | Minus |
CG8497-PA | 2157 | Rhp-RA | 1306..2154 | 867..19 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 1410..2258 | 867..19 | 4230 | 99.9 | Minus |
Rhp-RB | 2536 | CG8497-RB | 1565..2413 | 867..19 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15792710..15793037 | 700..373 | 1640 | 100 | Minus |
X | 23542271 | X | 15793307..15793509 | 221..19 | 1015 | 100 | Minus |
X | 23542271 | X | 15793092..15793244 | 372..220 | 765 | 100 | Minus |
X | 23542271 | X | 15792510..15792647 | 836..699 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:36:05 has no hits.
BO15478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:03 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1306..2157 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:31 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1306..2157 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:10 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 1565..2417 | 14..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:22 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 1565..2417 | 14..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:22 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15792518..15792647 | 699..828 | 100 | -> | Minus |
X | 15792419..15792457 | 829..867 | 97 | -> | Minus |
X | 15792712..15793037 | 373..698 | 100 | -> | Minus |
X | 15793092..15793244 | 220..372 | 100 | -> | Minus |
X | 15793309..15793513 | 14..219 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:10 Download gff for
BO15478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15686452..15686490 | 829..867 | 97 | -> | Minus |
arm_X | 15686551..15686680 | 699..828 | 100 | -> | Minus |
arm_X | 15686745..15687070 | 373..698 | 100 | -> | Minus |
arm_X | 15687125..15687277 | 220..372 | 100 | -> | Minus |
arm_X | 15687342..15687546 | 14..219 | 99 | | Minus |
BO15478.5prime Sequence
859 bp (787 high quality bases) assembled on 2006-05-29
> BO15478.5prime
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTG
BO15478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8497-PB | 2157 | Rhp-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG8497-PA | 2157 | Rhp-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 104..947 | 16..859 | 4220 | 100 | Plus |
Rhp-RB | 2536 | CG8497-RB | 259..1102 | 16..859 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15791460..15791806 | 513..859 | 1735 | 100 | Plus |
X | 23542271 | X | 15791241..15791397 | 359..515 | 785 | 100 | Plus |
X | 23542271 | X | 15790977..15791106 | 231..360 | 650 | 100 | Plus |
X | 23542271 | X | 15790742..15790860 | 115..233 | 595 | 100 | Plus |
X | 23542271 | X | 15790289..15790389 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:18:54 has no hits.
BO15478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:04 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:32 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:57 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 259..1102 | 16..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:27 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 259..1102 | 16..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:27 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15790289..15790388 | 16..115 | 100 | -> | Plus |
X | 15790743..15790859 | 116..232 | 100 | -> | Plus |
X | 15790979..15791106 | 233..360 | 100 | -> | Plus |
X | 15791243..15791396 | 361..514 | 100 | -> | Plus |
X | 15791462..15791806 | 515..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:57 Download gff for
BO15478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15684322..15684421 | 16..115 | 100 | -> | Plus |
arm_X | 15684776..15684892 | 116..232 | 100 | -> | Plus |
arm_X | 15685012..15685139 | 233..360 | 100 | -> | Plus |
arm_X | 15685276..15685429 | 361..514 | 100 | -> | Plus |
arm_X | 15685495..15685839 | 515..859 | 100 | | Plus |
BO15478.complete Sequence
2188 bp assembled on 2006-10-11
GenBank Submission: FJ633488
> BO15478.complete
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTGAAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCAGGCACGAGAATGCCTCTTTGAGAAGCTTCAGCTGCAGATCGAGGCGA
TGAGCCACGATTGCCAGGCGTTTCGGGATCTGGCTGGCGAGGCTGCTCAA
ATATCGCACGAGTACAATGAGATGCACAAGAATATCCAGGCGAACGATAC
GCACACCTATCTTCCGGAATGCTGGGCCGGTCTAGTGCCAGTCAAGGCGG
AACTCTACAAAGCATTCGCACATTTCTACAAGGCACGGAGCATAGATGCG
ACAGACGAGCTGAAGGCATCAAAGTCAAGTCAAAAGAACCAAGAATCCTT
CATCGGCAATTCCCAGGAGGTGGAGCGCATCACCACAGCCGATTATGGAG
CCAGCGATGAGGCGTCCACCTCCATTGCCAACAAACTGGCCCACTTAAAG
GAGGCGCTGGCCAGTATCGAGGAAGCCCAGCGATTGCAGCGGATGTGTCG
GTTCTTGAAGAACAAGGCATCACTGACTGAAGTCATGAAGGAGGTGCACT
CCAAATCGCAGGAGGAGCTCGAGAAGTTCAGACTGCAAGCTTCAGCCAAA
AATATCGAAGATGGCGATCTTCTAGAGCGATCGGTAGAAGCATCTTCGAA
GTTCACGTTATCCCTGACCGGACCCGACTTCACATCGCACAAGGTTAAGG
ATCCCTTCAAGCGCCTCGGCCCGATTGCAATATTCTCGGCGAGACGCCAC
TGGACAGCGCCCAGATGTGTGCGTCTCCAGAAAGGTTCCTCCCTGTATCA
CAGCGTGCCCAGCAATGACAACAAGTGCCCATTGGATAACGATGATGACG
AGGAGCACGATGGTGGATACAATCTGTACAAGGAGGAGTTTGAGAACTTT
GGCTTCCATGTGCGCGGCGATGCTCCGGTGATCATTGCCCACGTTGAGAT
TAATTCTTTGGCAGACCTTGGCGGCATCAAGGAGGGAGACTTCATAGTCG
AGATAGCCGGCGTGGACGTGAAGTGGTACTCCCATCAGCAGGTGGTGCAG
CTCATACAATCCTGCGGCTCTACACTCGAGCTGAGAGTGATAACGCCCAT
GGATCGCAACTACTTGAAGCCATTGTCGTCGAAGGGCTCATTATCAACGC
TATCGGCGGCCAGTTCATCGGGCATTTCATCCGGATTTCCCAGTCCCACA
AGTATTGCGGCCAAGCCCAAGCTCCACCTGAAAACATCCTCTAGTTCGCG
ACCCGCTGGCAGCGTTTCATCCAGTTCGTGGAATCCGTTTCGGCGAACGC
CTAGCTTAGCTAAAATATTTGCAAGCTTTCTAGACCAT
BO15478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2157 | CG8497-PA | 1..2154 | 17..2170 | 10770 | 100 | Plus |
Rhp-RB | 2157 | CG8497-PB | 1..2154 | 17..2170 | 10770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 104..2258 | 16..2170 | 10775 | 100 | Plus |
Rhp-RB | 2536 | CG8497-RB | 259..2413 | 16..2170 | 10775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15791460..15791902 | 513..955 | 2215 | 100 | Plus |
X | 23542271 | X | 15792710..15793037 | 1489..1816 | 1640 | 100 | Plus |
X | 23542271 | X | 15792208..15792457 | 1111..1360 | 1250 | 100 | Plus |
X | 23542271 | X | 15793307..15793509 | 1968..2170 | 1015 | 100 | Plus |
X | 23542271 | X | 15791241..15791397 | 359..515 | 785 | 100 | Plus |
X | 23542271 | X | 15791988..15792144 | 956..1112 | 785 | 100 | Plus |
X | 23542271 | X | 15793092..15793244 | 1817..1969 | 765 | 100 | Plus |
X | 23542271 | X | 15792510..15792647 | 1353..1490 | 675 | 99.3 | Plus |
X | 23542271 | X | 15790977..15791106 | 231..360 | 650 | 100 | Plus |
X | 23542271 | X | 15790742..15790860 | 115..233 | 595 | 100 | Plus |
X | 23542271 | X | 15796579..15796693 | 1192..1306 | 515 | 96.5 | Plus |
X | 23542271 | X | 15790289..15790389 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:21:46 has no hits.
BO15478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:22 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RA | 1..2157 | 17..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:08 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RA | 108..2266 | 16..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:55 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 260..2413 | 17..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:22 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RA | 108..2266 | 16..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:15 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 260..2413 | 17..2172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:15 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15791243..15791396 | 361..514 | 100 | -> | Plus |
X | 15790290..15790388 | 17..115 | 100 | -> | Plus |
X | 15790743..15790859 | 116..232 | 100 | -> | Plus |
X | 15790979..15791106 | 233..360 | 100 | -> | Plus |
X | 15791462..15791902 | 515..955 | 100 | -> | Plus |
X | 15791988..15792144 | 956..1112 | 100 | -> | Plus |
X | 15792210..15792457 | 1113..1360 | 100 | -> | Plus |
X | 15792518..15792647 | 1361..1490 | 100 | -> | Plus |
X | 15792712..15793037 | 1491..1816 | 100 | -> | Plus |
X | 15793092..15793244 | 1817..1969 | 100 | -> | Plus |
X | 15793309..15793509 | 1970..2172 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:55 Download gff for
BO15478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15686551..15686680 | 1361..1490 | 100 | -> | Plus |
arm_X | 15684323..15684421 | 17..115 | 100 | -> | Plus |
arm_X | 15684776..15684892 | 116..232 | 100 | -> | Plus |
arm_X | 15685012..15685139 | 233..360 | 100 | -> | Plus |
arm_X | 15685276..15685429 | 361..514 | 100 | -> | Plus |
arm_X | 15685495..15685935 | 515..955 | 100 | -> | Plus |
arm_X | 15686021..15686177 | 956..1112 | 100 | -> | Plus |
arm_X | 15686243..15686490 | 1113..1360 | 100 | -> | Plus |
arm_X | 15686745..15687070 | 1491..1816 | 100 | -> | Plus |
arm_X | 15687125..15687277 | 1817..1969 | 100 | -> | Plus |
arm_X | 15687342..15687542 | 1970..2172 | 99 | | Plus |
BO15478.pep Sequence
Translation from 16 to 2188
> BO15478.pep
MDEKEHELSTRVVKNEENEDDEKLNELSFCFVRGSDPRAATCRSKLQNRR
CKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQLLKEQ
LAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEE
PSMYIDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDR
NLGVYFEWYDSLTGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTER
GLDLAVDSFLRAAGVFRHIYDTFTNAPSMDLKPQVLDVLVSLMLSQAREC
LFEKLQLQIEAMSHDCQAFRDLAGEAAQISHEYNEMHKNIQANDTHTYLP
ECWAGLVPVKAELYKAFAHFYKARSIDATDELKASKSSQKNQESFIGNSQ
EVERITTADYGASDEASTSIANKLAHLKEALASIEEAQRLQRMCRFLKNK
ASLTEVMKEVHSKSQEELEKFRLQASAKNIEDGDLLERSVEASSKFTLSL
TGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSLYHSVPSN
DNKCPLDNDDDEEHDGGYNLYKEEFENFGFHVRGDAPVIIAHVEINSLAD
LGGIKEGDFIVEIAGVDVKWYSHQQVVQLIQSCGSTLELRVITPMDRNYL
KPLSSKGSLSTLSAASSSGISSGFPSPTSIAAKPKLHLKTSSSSRPAGSV
SSSSWNPFRRTPSLAKIFASFLDH
BO15478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-PA | 718 | CG8497-PA | 1..718 | 1..718 | 3695 | 100 | Plus |
Rhp-PB | 718 | CG8497-PB | 1..718 | 1..718 | 3695 | 100 | Plus |
ALiX-PA | 836 | CG12876-PA | 9..296 | 127..392 | 164 | 21.5 | Plus |