Clone BO15478 Report

Search the DGRC for BO15478

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptRhp-RA
Protein status:BO15478.pep: validated full length
Sequenced Size:2188

Clone Sequence Records

BO15478.3prime Sequence

867 bp (748 high quality bases) assembled on 2006-05-30

> BO15478.3prime
ATGGTCTAGAAAGCTTGCAAATATTTTAGCTAAGCTAGGCGTTCGCCGAA
ACGGATTCCACGAACTGGATGAAACGCTGCCAGCGGGTCGCGAACTAGAG
GATGTTTTCAGGTGGAGCTTGGGCTTGGCCGCAATACTTGTGGGACTGGG
AAATCCGGATGAAATGCCCGATGAACTGGCCGCCGATAGCGTTGATAATG
AGCCCTTCGACGACAATGGCTTCAAGTAGTTGCGATCCATGGGCGTTATC
ACTCTCAGCTCGAGTGTAGAGCCGCAGGATTGTATGAGCTGCACCACCTG
CTGATGGGAGTACCACTTCACGTCCACGCCGGCTATCTCGACTATGAAGT
CTCCCTCCTTGATGCCGCCAAGGTCTGCCAAAGAATTAATCTCAACGTGG
GCAATGATCACCGGAGCATCGCCGCGCACATGGAAGCCAAAGTTCTCAAA
CTCCTCCTTGTACAGATTGTATCCACCATCGTGCTCCTCGTCATCATCGT
TATCCAATGGGCACTTGTTGTCATTGCTGGGCACGCTGTGATACAGGGAG
GAACCTTTCTGGAGACGCACACATCTGGGCGCTGTCCAGTGGCGTCTCGC
CGAGAATATTGCAATCGGGCCGAGGCGCTTGAAGGGATCCTTAACCTTGT
GCGATGTGAAGTCGGGTCCGGTCAGGGATAACGTGAACTTCGAAGATGCT
TCTACCGATCGCTCTAGAAGATCGCCATCTTCGATATTTTTGGCTGAAGC
TTGCAGTCTGAACTTCTCGAGCTCCTCCTGCGATTTGGAGTGCACCTCCT
TCATGACTTCAGTCAGTGATGCCTTGTTCTTCAAGAACCGACACATCCGC
TGGAATCGCTGGGCTTC

BO15478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8497-PB 2157 Rhp-RB 1306..2154 867..19 4220 99.8 Minus
CG8497-PA 2157 Rhp-RA 1306..2154 867..19 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 1410..2258 867..19 4230 99.9 Minus
Rhp-RB 2536 CG8497-RB 1565..2413 867..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15792710..15793037 700..373 1640 100 Minus
X 23542271 X 15793307..15793509 221..19 1015 100 Minus
X 23542271 X 15793092..15793244 372..220 765 100 Minus
X 23542271 X 15792510..15792647 836..699 675 99.3 Minus
Blast to na_te.dros performed on 2015-01-31 10:36:05 has no hits.

BO15478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:03 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1306..2157 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:31 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1306..2157 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:10 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 1565..2417 14..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:22 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 1565..2417 14..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:22 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15792518..15792647 699..828 100 -> Minus
X 15792419..15792457 829..867 97 -> Minus
X 15792712..15793037 373..698 100 -> Minus
X 15793092..15793244 220..372 100 -> Minus
X 15793309..15793513 14..219 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:10 Download gff for BO15478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15686452..15686490 829..867 97 -> Minus
arm_X 15686551..15686680 699..828 100 -> Minus
arm_X 15686745..15687070 373..698 100 -> Minus
arm_X 15687125..15687277 220..372 100 -> Minus
arm_X 15687342..15687546 14..219 99   Minus

BO15478.5prime Sequence

859 bp (787 high quality bases) assembled on 2006-05-29

> BO15478.5prime
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTG

BO15478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8497-PB 2157 Rhp-RB 1..843 17..859 4215 100 Plus
CG8497-PA 2157 Rhp-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 104..947 16..859 4220 100 Plus
Rhp-RB 2536 CG8497-RB 259..1102 16..859 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15791460..15791806 513..859 1735 100 Plus
X 23542271 X 15791241..15791397 359..515 785 100 Plus
X 23542271 X 15790977..15791106 231..360 650 100 Plus
X 23542271 X 15790742..15790860 115..233 595 100 Plus
X 23542271 X 15790289..15790389 16..116 505 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:18:54 has no hits.

BO15478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:04 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:32 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:57 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 259..1102 16..859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:27 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 259..1102 16..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:27 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15790289..15790388 16..115 100 -> Plus
X 15790743..15790859 116..232 100 -> Plus
X 15790979..15791106 233..360 100 -> Plus
X 15791243..15791396 361..514 100 -> Plus
X 15791462..15791806 515..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:57 Download gff for BO15478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15684322..15684421 16..115 100 -> Plus
arm_X 15684776..15684892 116..232 100 -> Plus
arm_X 15685012..15685139 233..360 100 -> Plus
arm_X 15685276..15685429 361..514 100 -> Plus
arm_X 15685495..15685839 515..859 100   Plus

BO15478.complete Sequence

2188 bp assembled on 2006-10-11

GenBank Submission: FJ633488

> BO15478.complete
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTGAAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCAGGCACGAGAATGCCTCTTTGAGAAGCTTCAGCTGCAGATCGAGGCGA
TGAGCCACGATTGCCAGGCGTTTCGGGATCTGGCTGGCGAGGCTGCTCAA
ATATCGCACGAGTACAATGAGATGCACAAGAATATCCAGGCGAACGATAC
GCACACCTATCTTCCGGAATGCTGGGCCGGTCTAGTGCCAGTCAAGGCGG
AACTCTACAAAGCATTCGCACATTTCTACAAGGCACGGAGCATAGATGCG
ACAGACGAGCTGAAGGCATCAAAGTCAAGTCAAAAGAACCAAGAATCCTT
CATCGGCAATTCCCAGGAGGTGGAGCGCATCACCACAGCCGATTATGGAG
CCAGCGATGAGGCGTCCACCTCCATTGCCAACAAACTGGCCCACTTAAAG
GAGGCGCTGGCCAGTATCGAGGAAGCCCAGCGATTGCAGCGGATGTGTCG
GTTCTTGAAGAACAAGGCATCACTGACTGAAGTCATGAAGGAGGTGCACT
CCAAATCGCAGGAGGAGCTCGAGAAGTTCAGACTGCAAGCTTCAGCCAAA
AATATCGAAGATGGCGATCTTCTAGAGCGATCGGTAGAAGCATCTTCGAA
GTTCACGTTATCCCTGACCGGACCCGACTTCACATCGCACAAGGTTAAGG
ATCCCTTCAAGCGCCTCGGCCCGATTGCAATATTCTCGGCGAGACGCCAC
TGGACAGCGCCCAGATGTGTGCGTCTCCAGAAAGGTTCCTCCCTGTATCA
CAGCGTGCCCAGCAATGACAACAAGTGCCCATTGGATAACGATGATGACG
AGGAGCACGATGGTGGATACAATCTGTACAAGGAGGAGTTTGAGAACTTT
GGCTTCCATGTGCGCGGCGATGCTCCGGTGATCATTGCCCACGTTGAGAT
TAATTCTTTGGCAGACCTTGGCGGCATCAAGGAGGGAGACTTCATAGTCG
AGATAGCCGGCGTGGACGTGAAGTGGTACTCCCATCAGCAGGTGGTGCAG
CTCATACAATCCTGCGGCTCTACACTCGAGCTGAGAGTGATAACGCCCAT
GGATCGCAACTACTTGAAGCCATTGTCGTCGAAGGGCTCATTATCAACGC
TATCGGCGGCCAGTTCATCGGGCATTTCATCCGGATTTCCCAGTCCCACA
AGTATTGCGGCCAAGCCCAAGCTCCACCTGAAAACATCCTCTAGTTCGCG
ACCCGCTGGCAGCGTTTCATCCAGTTCGTGGAATCCGTTTCGGCGAACGC
CTAGCTTAGCTAAAATATTTGCAAGCTTTCTAGACCAT

BO15478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2157 CG8497-PA 1..2154 17..2170 10770 100 Plus
Rhp-RB 2157 CG8497-PB 1..2154 17..2170 10770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 104..2258 16..2170 10775 100 Plus
Rhp-RB 2536 CG8497-RB 259..2413 16..2170 10775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15791460..15791902 513..955 2215 100 Plus
X 23542271 X 15792710..15793037 1489..1816 1640 100 Plus
X 23542271 X 15792208..15792457 1111..1360 1250 100 Plus
X 23542271 X 15793307..15793509 1968..2170 1015 100 Plus
X 23542271 X 15791241..15791397 359..515 785 100 Plus
X 23542271 X 15791988..15792144 956..1112 785 100 Plus
X 23542271 X 15793092..15793244 1817..1969 765 100 Plus
X 23542271 X 15792510..15792647 1353..1490 675 99.3 Plus
X 23542271 X 15790977..15791106 231..360 650 100 Plus
X 23542271 X 15790742..15790860 115..233 595 100 Plus
X 23542271 X 15796579..15796693 1192..1306 515 96.5 Plus
X 23542271 X 15790289..15790389 16..116 505 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:21:46 has no hits.

BO15478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:22 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RA 1..2157 17..2174 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:08 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RA 108..2266 16..2175 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:55 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 260..2413 17..2172 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:22 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RA 108..2266 16..2175 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:15 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 260..2413 17..2172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:15 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
X 15791243..15791396 361..514 100 -> Plus
X 15790290..15790388 17..115 100 -> Plus
X 15790743..15790859 116..232 100 -> Plus
X 15790979..15791106 233..360 100 -> Plus
X 15791462..15791902 515..955 100 -> Plus
X 15791988..15792144 956..1112 100 -> Plus
X 15792210..15792457 1113..1360 100 -> Plus
X 15792518..15792647 1361..1490 100 -> Plus
X 15792712..15793037 1491..1816 100 -> Plus
X 15793092..15793244 1817..1969 100 -> Plus
X 15793309..15793509 1970..2172 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:55 Download gff for BO15478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15686551..15686680 1361..1490 100 -> Plus
arm_X 15684323..15684421 17..115 100 -> Plus
arm_X 15684776..15684892 116..232 100 -> Plus
arm_X 15685012..15685139 233..360 100 -> Plus
arm_X 15685276..15685429 361..514 100 -> Plus
arm_X 15685495..15685935 515..955 100 -> Plus
arm_X 15686021..15686177 956..1112 100 -> Plus
arm_X 15686243..15686490 1113..1360 100 -> Plus
arm_X 15686745..15687070 1491..1816 100 -> Plus
arm_X 15687125..15687277 1817..1969 100 -> Plus
arm_X 15687342..15687542 1970..2172 99   Plus

BO15478.pep Sequence

Translation from 16 to 2188

> BO15478.pep
MDEKEHELSTRVVKNEENEDDEKLNELSFCFVRGSDPRAATCRSKLQNRR
CKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQLLKEQ
LAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEE
PSMYIDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDR
NLGVYFEWYDSLTGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTER
GLDLAVDSFLRAAGVFRHIYDTFTNAPSMDLKPQVLDVLVSLMLSQAREC
LFEKLQLQIEAMSHDCQAFRDLAGEAAQISHEYNEMHKNIQANDTHTYLP
ECWAGLVPVKAELYKAFAHFYKARSIDATDELKASKSSQKNQESFIGNSQ
EVERITTADYGASDEASTSIANKLAHLKEALASIEEAQRLQRMCRFLKNK
ASLTEVMKEVHSKSQEELEKFRLQASAKNIEDGDLLERSVEASSKFTLSL
TGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSLYHSVPSN
DNKCPLDNDDDEEHDGGYNLYKEEFENFGFHVRGDAPVIIAHVEINSLAD
LGGIKEGDFIVEIAGVDVKWYSHQQVVQLIQSCGSTLELRVITPMDRNYL
KPLSSKGSLSTLSAASSSGISSGFPSPTSIAAKPKLHLKTSSSSRPAGSV
SSSSWNPFRRTPSLAKIFASFLDH

BO15478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-PA 718 CG8497-PA 1..718 1..718 3695 100 Plus
Rhp-PB 718 CG8497-PB 1..718 1..718 3695 100 Plus
ALiX-PA 836 CG12876-PA 9..296 127..392 164 21.5 Plus