Clone BO15479 Report

Search the DGRC for BO15479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG31156-RA
Protein status:BO15479.pep: validated full length
Sequenced Size:2878

Clone Sequence Records

BO15479.3prime Sequence

852 bp (786 high quality bases) assembled on 2006-05-29

> BO15479.3prime
ATGGTCTAGAAAGCTTGCATCCTCCGCCTTGAACTTAAACGAGGTATCCG
TCTCCATCAGCATATTTTCCAAACGTAATTCCAACTGGCGTCGCTTCAGA
TCCACCTTTACCACCGATGCCACAATGCGATCGCCAACGCTCAGCTGCGA
ATTATTCATGTTACTGTTGTGTATGAGGCCATTGCGCTCCACTCCAACGT
CCACGAAGGCGCCAAACTGGGTTACGTTGGTCACGGCACCAGTGACCACC
TCGCCCATGCTAAGATCATCCAGCCTAGTTAGACCTTGTTTGAACAGTGG
CCTCTTGTCCAGATCTGCTCGATAATCCTGAAGTAATTCGCGCTGCAGGG
CAACCAACAGGAACTCCAATCGCTCCATGGGCAGCTTGTGCTGCTTGGCA
ATGCGATCGAGATTAGGCTGGGATGAGGCAAACTGCTTGATGCTAGCTAT
AAAGGCAGCCTTGCCCACATCCGACAGCTTTAAGTCACATTCTCCGACAA
TACTTTCCACAACGTTGTAGCTCTCAGGATGCACCCAAGTGCAATCTAAT
GGATTCTGTAGTTGTCCTCCAACGCTTCGGGGTTCGATGCGCACAAAACC
GGCGCACTGGACAAACGATTTCTCACCTATGCTTCGCACGGAGAGCAGAT
CCTTCCGTGTCTTGAATGGTCCTTTCTGCGTACGATGCTCAATGATCTTT
TCCGCTTTCTTTTCCGACAGACCAGCAATGTGCTTGAGTACACTCAGACT
GGCTGTGTTGAGATCAACGCCAACATAACTGACACACTCGGACACAACGT
CATTCAGCGATGCCGTCAAAATCCTCTCGGGAACATCGTGCTGGTACATA
CC

BO15479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 2847 CG31156-RA 2011..2844 852..19 4145 99.8 Minus
CG31156-PB 2982 CG31156-RB 2496..2979 502..19 2420 100 Minus
CG31156-PB 2982 CG31156-RB 2011..2360 852..503 1725 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 2167..3000 852..19 4155 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22610722..22610952 503..733 1155 100 Plus
3R 32079331 3R 22608863..22609088 19..244 1115 99.6 Plus
3R 32079331 3R 22609349..22609483 370..504 675 100 Plus
3R 32079331 3R 22609145..22609275 239..369 655 100 Plus
3R 32079331 3R 22611009..22611128 733..852 585 99.2 Plus
Blast to na_te.dros performed on 2015-01-30 18:37:43 has no hits.

BO15479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:06 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 2011..2847 18..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:34 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 2011..2847 18..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:00:24 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 2167..3000 19..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:25 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 2167..3000 19..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:25 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22608863..22609083 19..239 100 <- Plus
3R 22609146..22609275 240..369 100 <- Plus
3R 22609349..22609481 370..502 100 <- Plus
3R 22610722..22610952 503..733 100 <- Plus
3R 22611010..22611128 734..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:00:24 Download gff for BO15479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18434585..18434805 19..239 100 <- Plus
arm_3R 18434868..18434997 240..369 100 <- Plus
arm_3R 18435071..18435203 370..502 100 <- Plus
arm_3R 18436444..18436674 503..733 100 <- Plus
arm_3R 18436732..18436850 734..852 99   Plus

BO15479.5prime Sequence

934 bp (775 high quality bases) assembled on 2006-05-29

> BO15479.5prime
GAAGTTATCAGTCGACATGTCGAAACGACCTCGACGCGCGGCATCCACAA
AAAAGATAGTAATTGAAATCTCCGACTCAGATGAGGAAGTGAATCTTACG
GCAGACGACGATTACAGGCCGGAAGAAACCAAGAGTCGCATAATAGATCG
CGCTGCAGATGCGCAGACCGTCGTGACCAAACGCCAGCGGTTCCCAACAT
CCAAAAAAACAGCTGCTGAGGGACCAGCTCCCAAGAAAAAGCGGGGCGAC
AAAGAAAAGGCGGACGAGAATGCTTGTCCCAATGAGAACAATCCGGAATC
GGTAGTCCAGGACACACCTTCAACTTCAAACCAACGGAATGGAGCCGTAG
GCACTGAACACAATTCCGAAGCTCCGGCTCCTAAGAGAAAACGCGCCAGA
AAGGATAAGGAGGACTTGAAAACGGCAGCCAATGAGACTAATCCTGAGAA
GGGGGACGTTGTGCCCTCAACAGCAGTGACACAACCAAACGATATCGTAG
CCAGCTCCTCACACAACAAGTCTTCCACTGGACGCAGTTCCTTCTGGGAG
CGACGAAAGGTGTGGAACATCGACGAGCTCCTGGCCGAAACGGAGAGCAT
ACAACCGCAGGCAGCTCGAAATATTGTAAAGCTCTTCGAGGATGAAAATA
CCATACCTTTTATTTGCAGGTACCGTCGAGATCTGGTGGATCACATCGCT
CCAGATCGCCTTAGAGATATTCGGAACACGTACACAGAGATCGTCGATCT
GCGGAAAAGAGCTGAGAATATTATTGGTAAATTGCAGCGTGAAAACATCA
TGACTCCGGAAATAAGAGAGGAGCTAATGTGCGCCAAGTCCAACGAAGAA
CTGGAGTTCCTTTATGCCCCCCTATAAGCCGGCCAGTAAGGGCACTTTGG
CGGAACGCGCCAAAGCTTTGGGGCTGGCAGGTGT

BO15479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 2847 CG31156-RA 1..855 17..871 4275 100 Plus
CG31156-PB 2982 CG31156-RB 1..855 17..871 4275 100 Plus
CG31156-PA 2847 CG31156-RA 851..905 868..922 275 100 Plus
CG31156-PB 2982 CG31156-RB 851..905 868..922 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 155..1072 15..934 4535 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22612786..22613284 673..175 2495 100 Minus
3R 32079331 3R 22612473..22612727 922..667 1230 99.6 Minus
3R 32079331 3R 22613342..22613502 175..15 805 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:53:30 has no hits.

BO15479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:07 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 1..916 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:35 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PB 1..916 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:25 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 149..1072 7..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:47 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 149..1072 7..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:47 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22612462..22612724 670..934 98 <- Minus
3R 22612790..22613284 175..669 100 <- Minus
3R 22613343..22613508 7..174 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:25 Download gff for BO15479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18438184..18438446 670..934 98 <- Minus
arm_3R 18438512..18439006 175..669 100 <- Minus
arm_3R 18439065..18439230 7..174 97   Minus

BO15479.complete Sequence

2878 bp assembled on 2006-10-11

GenBank Submission: FJ633489

> BO15479.complete
GAAGTTATCAGTCGACATGTCGAAACGACCTCGACGCGCGGCATCCACAA
AAAAGATAGTAATTGAAATCTCCGACTCAGATGAGGAAGTGAATCTTACG
GCAGACGACGATTACAGGCCGGAAGAAACCAAGAGTCGCATAATAGATCG
CGCTGCAGATGCGCAGACCGTCGTGACCAAACGCCAGCGGTTCCCAACAT
CCAAAAAAACAGCTGCTGAGGGACCAGCTCCCAAGAAAAAGCGGGGCGAC
AAAGAAAAGGCGGACGAGAATGCTTGTCCCAATGAGAACAATCCGGAATC
GGTAGTCCAGGACACACCTTCAACTTCAAACCAACGGAATGGAGCCGTAG
GCACTGAACACAATTCCGAAGCTCCGGCTCCTAAGAGAAAACGCGCCAGA
AAGGATAAGGAGGACTTGAAAACGGCAGCCAATGAGACTAATCCTGAGAA
GGGGGACGTTGTGCCCTCAACAGCAGTGACACAACCAAACGATATCGTAG
CCAGCTCCTCACACAACAAGTCTTCCACTGGACGCAGTTCCTTCTGGGAG
CGACGAAAGGTGTGGAACATCGACGAGCTCCTGGCCGAAACGGAGAGCAT
ACAACCGCAGGCAGCTCGAAATATTGTAAAGCTCTTCGAGGATGAAAATA
CCATACCTTTTATTTGCAGGTACCGTCGAGATCTGGTGGATCACATCGCT
CCAGATCGCCTTAGAGATATTCGGAACACGTACACAGAGATCGTCGATCT
GCGGAAAAGAGCTGAGAATATTATTGGTAAATTGCAGCGTGAAAACATCA
TGACTCCGGAAATAAGAGAGGAGCTAATGTGCGCCAAGTCCAACGAAGAA
CTGGAGTTCCTTTATGCCCCCTATAAGCCGGCCAGTAAGGGCACTTTGGC
GGAACGCGCCAAAGCTTTGGGCTTGCAGGTGTACGCCGATTGTTTACTGT
ACGGCTCAGCACCTAAGGTCAACCTTTCTGAAATTGTGGACCGCCGAAAT
GAGGCTTTAGCTACGGAGGCACTTGTGATGTCTGGAATCTGCCAAATTAT
TATTCACAACATCAGCAAAAACACAAATGTTTTGGAGGAAATACGCAGAT
TGCAAAACGTGCACCGGGTATTCCTCAAGTGCAGCAAGACCAAGGAGGCG
AAATCGTCTAAATCTAGTTCTTCTAGTAAAGCAAGCTCCAGTAAAGGATC
CAACCAAAATGCAGATAAGAAATTGGATAGCTCAAAGTTTGAGAATTATT
TCAACTTCCAGGGTGATGTTAAAACTATAAAACCTTATCAAATGTTAGCC
ATCAATCGTGGGGAGAAGCACAAATGGCTTTCTGTCAAGATAGAAACGAA
CGATTACCTTAAAAGAGATCTGATGCGCTATATAACCGATCAGTACATGA
ACCAAGGCTTGCAATATCCATTAAGAAGGGAGGTGTTCACAAAATCCTTA
GAGGAGTGCTACGCGAAGAAGTTGCAGCCCTTGATGTGCAGGCAGATTCG
AGCGGCTTTAAAAGAAAAAGGCACAAAGGCAGCCATCGATGTGTTTGCCA
AGAACCTGAAGCAACTACTGTTGATATCCCCCTTGAAAGGCGAACGCATT
TTGGGCATAGATCCGGGTTTTATAAATGGATGCAAGCTGGCACTTATATC
CGAGACTGCTGATGTGCTGTACACTGGTGTTATTTACCCTCATGGTGCCA
TGTCAAACAAGCGGGCTGCCGAACAGAAATTGGTTCAGCTTCTTTCAGAT
CATAACTGTAAAATTATTGGCCTGGGCAATGGTACTGCCTGTCGCGAAAC
TGAGCACTGGCTAACTGGTATGTTTCATGCCGGCGTTCTGGACAGCAGGA
TCATTCGCTACAGCATCGTTAACGAGAATGGAGCATCTATTTACTCCTGC
AGCAATGTGGCCGCCAAGGAGTTTCCCAAAATGGATACAAACGAAAGGAG
CGCAGTGTCCATAGCGCGTCGTTTGAATGATCCATTGAGTGAATATGTTA
AAATAGAGCCCCGTCACCTGGGGGTTGGTATGTACCAGCACGATGTTCCC
GAGAAGATTTTGACGGCATCGCTGAATGACGTTGTGTCCGAGTGTGTCAG
TTATGTTGGCGTTGATCTCAACACAGCCAGTCTGAGTGTACTCAAGCACA
TTGCTGGTCTGTCGGAAAAGAAAGCGGAAAAGATCATTGAGCATCGTACG
CAGAAAGGACCATTCAAGACACGGAAGGATCTGCTCTCCGTGCGAAGCAT
AGGTGAGAAATCGTTTGTCCAGTGCGCCGGTTTTGTGCGCATCGAACCCC
GAAGCGTTGGAGGACAACTACAGAATCCATTAGATTGCACTTGGGTGCAT
CCTGAGAGCTACAACGTTGTGGAAAGTATTGTCGGAGAATGTGACTTAAA
GCTGTCGGATGTGGGCAAGGCTGCCTTTATAGCTAGCATCAAGCAGTTTG
CCTCATCCCAGCCTAATCTCGATCGCATTGCCAAGCAGCACAAGCTGCCC
ATGGAGCGATTGGAGTTCCTGTTGGTTGCCCTGCAGCGCGAATTACTTCA
GGATTATCGAGCAGATCTGGACAAGAGGCCACTGTTCAAACAAGGTCTAA
CTAGGCTGGATGATCTTAGCATGGGCGAGGTGGTCACTGGTGCCGTGACC
AACGTAACCCAGTTTGGCGCCTTCGTGGACGTTGGAGTGGAGCGCAATGG
CCTCATACACAACAGTAACATGAATAATTCGCAGCTGAGCGTTGGCGATC
GCATTGTGGCATCGGTGGTAAAGGTGGATCTGAAGCGACGCCAGTTGGAA
TTACGTTTGGAAAATATGCTGATGGAGACGGATACCTCGTTTAAGTTCAA
GGCGGAGGATGCAAGCTTTCTAGACCAT

BO15479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 2847 CG31156-PA 1..2844 17..2860 14220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 155..3000 15..2860 14230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22612786..22613284 673..175 2495 100 Minus
3R 32079331 3R 22612292..22612727 1102..667 2180 100 Minus
3R 32079331 3R 22611863..22612233 1472..1102 1855 100 Minus
3R 32079331 3R 22611521..22611803 1755..1473 1415 100 Minus
3R 32079331 3R 22610722..22610952 2376..2146 1155 100 Minus
3R 32079331 3R 22608863..22609088 2860..2635 1115 99.6 Minus
3R 32079331 3R 22611252..22611451 1955..1756 1000 100 Minus
3R 32079331 3R 22611009..22611201 2146..1954 965 100 Minus
3R 32079331 3R 22613342..22613502 175..15 805 100 Minus
3R 32079331 3R 22609349..22609483 2509..2375 675 100 Minus
3R 32079331 3R 22609145..22609275 2640..2510 655 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:59:48 has no hits.

BO15479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:24 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 1..2847 17..2861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:46 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 120..2971 7..2860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:56 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 157..3000 17..2862 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:24 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 120..2971 7..2860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:42 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 157..3000 17..2862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:42 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22613343..22613500 17..174 100   Minus
3R 22612293..22612724 670..1101 100 <- Minus
3R 22612790..22613284 175..669 100 <- Minus
3R 22608861..22609083 2640..2862 99 <- Minus
3R 22609146..22609275 2510..2639 100 <- Minus
3R 22609349..22609481 2377..2509 100 <- Minus
3R 22610722..22610952 2146..2376 100 <- Minus
3R 22611010..22611199 1956..2145 100 <- Minus
3R 22611252..22611451 1756..1955 100 <- Minus
3R 22611521..22611803 1473..1755 100 <- Minus
3R 22611863..22612233 1102..1472 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:56 Download gff for BO15479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18436732..18436921 1956..2145 100 <- Minus
arm_3R 18436974..18437173 1756..1955 100 <- Minus
arm_3R 18437243..18437525 1473..1755 100 <- Minus
arm_3R 18434583..18434805 2640..2862 99 <- Minus
arm_3R 18434868..18434997 2510..2639 100 <- Minus
arm_3R 18435071..18435203 2377..2509 100 <- Minus
arm_3R 18436444..18436674 2146..2376 100 <- Minus
arm_3R 18437585..18437955 1102..1472 100 <- Minus
arm_3R 18438015..18438446 670..1101 100 <- Minus
arm_3R 18438512..18439006 175..669 100 <- Minus
arm_3R 18439065..18439222 17..174 100   Minus

BO15479.pep Sequence

Translation from 16 to 2878

> BO15479.pep
MSKRPRRAASTKKIVIEISDSDEEVNLTADDDYRPEETKSRIIDRAADAQ
TVVTKRQRFPTSKKTAAEGPAPKKKRGDKEKADENACPNENNPESVVQDT
PSTSNQRNGAVGTEHNSEAPAPKRKRARKDKEDLKTAANETNPEKGDVVP
STAVTQPNDIVASSSHNKSSTGRSSFWERRKVWNIDELLAETESIQPQAA
RNIVKLFEDENTIPFICRYRRDLVDHIAPDRLRDIRNTYTEIVDLRKRAE
NIIGKLQRENIMTPEIREELMCAKSNEELEFLYAPYKPASKGTLAERAKA
LGLQVYADCLLYGSAPKVNLSEIVDRRNEALATEALVMSGICQIIIHNIS
KNTNVLEEIRRLQNVHRVFLKCSKTKEAKSSKSSSSSKASSSKGSNQNAD
KKLDSSKFENYFNFQGDVKTIKPYQMLAINRGEKHKWLSVKIETNDYLKR
DLMRYITDQYMNQGLQYPLRREVFTKSLEECYAKKLQPLMCRQIRAALKE
KGTKAAIDVFAKNLKQLLLISPLKGERILGIDPGFINGCKLALISETADV
LYTGVIYPHGAMSNKRAAEQKLVQLLSDHNCKIIGLGNGTACRETEHWLT
GMFHAGVLDSRIIRYSIVNENGASIYSCSNVAAKEFPKMDTNERSAVSIA
RRLNDPLSEYVKIEPRHLGVGMYQHDVPEKILTASLNDVVSECVSYVGVD
LNTASLSVLKHIAGLSEKKAEKIIEHRTQKGPFKTRKDLLSVRSIGEKSF
VQCAGFVRIEPRSVGGQLQNPLDCTWVHPESYNVVESIVGECDLKLSDVG
KAAFIASIKQFASSQPNLDRIAKQHKLPMERLEFLLVALQRELLQDYRAD
LDKRPLFKQGLTRLDDLSMGEVVTGAVTNVTQFGAFVDVGVERNGLIHNS
NMNNSQLSVGDRIVASVVKVDLKRRQLELRLENMLMETDTSFKFKAEDAS
FLDH

BO15479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 948 CG31156-PA 1..948 1..948 4831 100 Plus