Clone Sequence Records
BO15481.3prime Sequence
797 bp (747 high quality bases) assembled on 2006-05-29
> BO15481.3prime
ATGGTCTAGAAAGCTTGCGTACTCGCTGTCGTAGCTTCCGTCCTGCTGCG
CCTGCGTCGAGTCATCGGAACGCTCCGAAGTGGGCTCCAGATCAACGTCC
AGGGCCGTAGTGTTGGCCGGACAGCAGCTGGGATGAGCCATTGAGTCGAA
GGCATCTTTGATTTGATTGTTGGCACCTTTGGGATCTAGGTCGGTGGCCC
AGCTGAAGTGCATCAGCGCCAGATCCATGTTGCCGAGCGTCTTGTGGATT
TTGCCGATCAGATAGAACACCACCGACTCCTTGGGCACGACTTCCTTGAG
CTCCTCCAGTTCGCGCAGCGCCTCCTGGTACTTGCCCAGCGAGAAGTAGA
TGGAGCCGCGATGGAATCGCGTCAGCGGGTTCTTGGGGTCCAGCGTGGCG
GCCGTGTTTAGCGTCTGCAGCGACAGATCCTTCTTCTTCATGTAGAATTG
CATGGCGCCGATGTGCACGAGAATAACCGAGTTCTGTGGATTGATTTTCA
GCGCCTTCACGTAGTGAATCTCAGCCAGCTCGTATTTCTCCTGCTTGGAG
TAGATGGTGCCGATGCCGTACCAAGCATTGTAATGCCGCGGATCTCTAAC
CACTGCTGCACGGAAGTAGTCCATGGCCTTATCAAATTCTTCGGTGAGTA
CGAGTTCGTGGCCCAACAGTGTGTAGCTGTAGACGAAGTCTGGATCCACT
TGGACAGCCCGCTTGAAGAACTTGATCGCGGTTTCGTGCTCCTTTTGCAG
CGAAAAGCAATTGCCGGACACACACCCAGTAACCGGGCTGGTTTTGT
BO15481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8610-PA | 2703 | Cdc27-RA | 1922..2696 | 797..23 | 3825 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 3713 | CG8610-RB | 2581..3359 | 797..19 | 3850 | 99.6 | Minus |
| Cdc27-RA | 3438 | CG8610-RA | 2581..3359 | 797..19 | 3850 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7245835..7246613 | 19..797 | 3850 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:37:42 has no hits.
BO15481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:08 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-PA | 1922..2703 | 18..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:36 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8610-PA | 1922..2703 | 18..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:40 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 2581..3359 | 19..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:18 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 2581..3359 | 19..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:18 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7245835..7246613 | 19..797 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:40 Download gff for
BO15481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7238935..7239713 | 19..797 | 99 | | Plus |
BO15481.5prime Sequence
867 bp (757 high quality bases) assembled on 2006-05-29
> BO15481.5prime
GAAGTTATCAGTCGACATGATGATTCAAGAGCCCGTGCAGGCCGCCATAT
GGCATTGCCTGAACTACTACGACTTCAAGGATGCCGTTTTCCTGTCGGAA
CGCCTGTGCTCAGAAGTGGAGAGCGACGAGACGATATTCCTGCTGGCCAC
CAGCTACTTCCGCTCCAATCAGGTGCACCAGGCATATTGGCTGCTCAAGG
AGAAGGCACGCCGCTCGCCGCAGTGCCGCTTTCTGCAGGCCAAATGTGCC
TACGAGCTGAAAAAATACGCTGAGGCGGAGAGTGCCCTGATCTCCACGGG
ATTCGCGGACGCCAAGAACTGCGATGAGCTGCAGCGGGACTTCGGGGATC
TGGCCTGCTTCGCCTATCAGCTAATGGCCCAGATCTGCATGAGGACCGAG
CGCAATAAACTGGCCGTTAGTGCTTTAAGGCGCGCCCTCAAACTGAACCC
CTTCATGTGGCACGCATTCGCGGATCTGTGCCTGCTGGGCCAGGATACAG
ATGCGGCGGCCATATTCCAAATCCACAGCACAGATGTGTTCAATACCTGC
CAGGGCAGCAGCGTAAATGCCAATGCAATGGTGCTGTTCGGAGCCGAGCA
GCAGGGTCAACAGCATCAGGAGCGCCAGTCGCTGATCACCAACCTAAGCA
ATGTCTCCAACTACATTCTGACCACGCCCGTGGATCAGCAGCAACAACAG
ATCAACCAGAATCAGAACCAGCACCACAACAGCAACATGGTGACGCCCAT
CAACAATAATAATAATAACAACAATCTCAATAGTTCGATCAGCATGCTGC
GCGGGGGTTTGGTACAAAACTCCAGCATGCTGGCGATGCTGGAGGACACA
CCTATGGGAGCTCCGCA
BO15481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8610-PA | 2703 | Cdc27-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 3713 | CG8610-RB | 657..1510 | 14..867 | 4270 | 100 | Plus |
| Cdc27-RA | 3438 | CG8610-RA | 657..1510 | 14..867 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7247684..7248436 | 867..115 | 3765 | 100 | Minus |
| 3L | 28110227 | 3L | 7248504..7248581 | 116..39 | 390 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 13:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2464 | 609..794 | 179 | 58 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1158 | 687..773 | 158 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6885 | 595..794 | 148 | 57 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3382 | 684..771 | 133 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1617 | 686..777 | 122 | 69.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1111..1165 | 682..735 | 119 | 70.9 | Plus |
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1116..1143 | 776..749 | 113 | 89.3 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2739..2801 | 714..776 | 108 | 63.5 | Plus |
BO15481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:09 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:37 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8610-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:50 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 655..1509 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:33 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 655..1509 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:33 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7247685..7248434 | 117..866 | 100 | <- | Minus |
| 3L | 7248504..7248579 | 41..116 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:50 Download gff for
BO15481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7240785..7241534 | 117..866 | 100 | <- | Minus |
| arm_3L | 7241604..7241679 | 41..116 | 100 | <- | Minus |
BO15481.complete Sequence
2734 bp assembled on 2008-08-14
GenBank Submission: FJ633490
> BO15481.complete
GAAGTTATCAGTCGACATGATGATTCAAGAGCCCGTGCAGGCCGCCATAT
GGCATTGCCTGAACTACTACGACTTCAAGGATGCCGTTTTCCTGTCGGAA
CGCCTGTGCTCAGAAGTGGAGAGCGACGAGACGATATTCCTGCTGGCCAC
CAGCTACTTCCGCTCCAATCAGGTGCACCAGGCATATTGGCTGCTCAAGG
AGAAGGCACGCCGCTCGCCGCAGTGCCGCTTTCTGCAGGCCAAATGTGCC
TACGAGCTGAAAAAATACGCTGAGGCGGAGAGTGCCCTGATCTCCACGGG
ATTCGCGGACGCCAAGAACTGCGATGAGCTGCAGCGGGACTTCGGGGATC
TGGCCTGCTTCGCCTATCAGCTAATGGCCCAGATCTGCATGAGGACCGAG
CGCAATAAACTGGCCGTTAGTGCTTTAAGGCGCGCCCTCAAACTGAACCC
CTTCATGTGGCACGCATTCGCGGATCTGTGCCTGCTGGGCCAGGATACAG
ATGCGGCGGCCATATTCCAAATCCACAGCACAGATGTGTTCAATACCTGC
CAGGGCAGCAGCGTAAATGCCAATGCAATGGTGCTGTTCGGAGCCGAGCA
GCAGGGTCAACAGCATCAGGAGCGCCAGTCGCTGATCACCAACCTAAGCA
ATGTCTCCAACTACATTCTGACCACGCCCGTGGATCAGCAGCAACAACAG
ATCAACCAGAATCAGAACCAGCACCACAACAGCAACATGGTGACGCCCAT
CAACAATAATAATAATAACAACAATCTCAATAGTTCGATCAGCATGCTGC
GCGGGGGTTTGGTACAAAACTCCAGCATGCTGGCGATGCTGGAGGACACA
CCTATGGGAGCTCCGCAGGACCCGGCCGGCCAGTATCAGCAGAACCAGCA
GCTCTACGACATGAGCAGCGGTACTCCGTTTCGCAAACAGTTCAAATACC
TATCGGCCATCTCACCGCCAACACCGAGCTTCGGCATCATGCCTTTAACT
AGTCCGTGCACCGGCAACGATGGATCCTTCATTGGCAACCACACGCCCGT
TATGAATATAAGCTATTCGCCGATGCCACAGATGTTGGTCGAGGTCAACC
AGGAGCCGAAGATGATGGGCAAAAAGCTAAAGACACATGTGGGCGGACTC
ATCAATCGCAAAGAGGGCAGCCTTAATAAACCCGCCGTCTTTACGCAAGC
CGGAAACATAACGCCCCGCACTCCGAACAACAATAATGTGGGCAACAATG
GCAATATGAATGTGCCGCCCAATCCGAATGCTGCAGTGCGTCGCAGTTCG
CGGCTGTTCAGCAACTCGTATTCGGTGAAGGAGAACAATAAATCGCCCAA
CATAGCCAACAAGTTCGTGCAGCCACGTTCGCCGCCCCGCAAAGCCAAGT
CACGGATGACCAAGATCTGCCTAAATAACGAACTGATCGAGGATAAGTCC
CACCACCTCTCCGAGAAGCGCAAGGAGAAGGTGGAGACTATTACTTCCTC
GGGAGCGAATAACAACAGCGGTGGACGCAGTGCCGCCGAGGAGGCCAAAG
TACTGCTGAACAATAGCCTAAACAATGCCCAGACGATGGCCCACCAGCTG
ATGGGACTCAAGAAACAATCGGCCGATGGGCTGATGGCCCTGCTGCGGGG
TTTAGCTGAAGCCTATCAGCTGCTCTCGAACTTCCAGTGCAAGGCGGCCA
TAAAGCAGCTGGAGACGACGATACCAAAGCACCACCTGAACTCCAGCTGG
GTGCAGTCGCTCATCGGACTGGCCAGGTACGAGATGCGTGAGTATGAGGC
GGCGGTGGCGATATTTGAGACCATCCACAAGACAGAGCCATGTCGCTTGG
ACTACATGGAGATATACTCGTCATCCCTGTGGCATTTGCAGCGCGAGGTT
GAGCTGTCAGCTCTCGCCCAGGATCTGATTAACCAGGACAAAACCAGCCC
GGTTACCTGGTGTGTGTCCGGCAATTGCTTTTCGCTGCAAAAGGAGCACG
AAACCGCGATCAAGTTCTTCAAGCGGGCTGTCCAAGTGGATCCAGACTTC
GTCTACAGCTACACACTGTTGGGCCACGAACTCGTACTCACCGAAGAATT
TGATAAGGCCATGGACTACTTCCGTGCAGCAGTGGTTAGAGATCCGCGGC
ATTACAATGCTTGGTACGGCATCGGCACCATCTACTCCAAGCAGGAGAAA
TACGAGCTGGCTGAGATTCACTACGTGAAGGCGCTGAAAATCAATCCACA
GAACTCGGTTATTCTCGTGCACATCGGCGCCATGCAATTCTACATGAAGA
AGAAGGATCTGTCGCTGCAGACGCTAAACACGGCCGCCACGCTGGACCCC
AAGAACCCGCTGACGCGATTCCATCGCGGCTCCATCTACTTCTCGCTGGG
CAAGTACCAGGAGGCGCTGCGCGAACTGGAGGAGCTCAAGGAAGTCGTGC
CCAAGGAGTCGGTGGTGTTCTATCTGATCGGCAAAATCCACAAGACGCTC
GGCAACATGGATCTGGCGCTGATGCACTTCAGCTGGGCCACCGACCTAGA
TCCCAAAGGTGCCAACAATCAAATCAAAGATGCCTTCGACTCAATGGCTC
ATCCCAGCTGCTGTCCGGCCAACACTACGGCCCTGGACGTTGATCTGGAG
CCCACTTCGGAGCGTTCCGATGACTCGACGCAGGCGCAGCAGGACGGAAG
CTACGACAGCGACTACGCAAGCTTTCTAGACCAT
BO15481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 2703 | CG8610-PB | 1..2700 | 17..2716 | 13500 | 100 | Plus |
| Cdc27-RA | 2703 | CG8610-PA | 1..2700 | 17..2716 | 13500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 3713 | CG8610-RB | 657..3359 | 14..2716 | 13515 | 100 | Plus |
| Cdc27-RA | 3438 | CG8610-RA | 657..3359 | 14..2716 | 13515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7245835..7248436 | 2716..115 | 13010 | 100 | Minus |
| 3L | 28110227 | 3L | 7248504..7248581 | 116..39 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1071..1158 | 687..773 | 158 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6885 | 595..794 | 148 | 57 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3382 | 684..771 | 133 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1617 | 686..777 | 122 | 69.6 | Plus |
BO15481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:29 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 654..3358 | 9..2716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:26 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 660..3359 | 17..2718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:42 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 659..3358 | 17..2718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:12 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 660..3359 | 17..2718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:12 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7245833..7248434 | 117..2718 | 99 | <- | Minus |
| 3L | 7248504..7248579 | 41..116 | 100 | <- | Minus |
| 3L | 7248658..7248681 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:26 Download gff for
BO15481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7238933..7241534 | 117..2718 | 99 | <- | Minus |
| arm_3L | 7241604..7241679 | 41..116 | 100 | <- | Minus |
| arm_3L | 7241758..7241781 | 17..40 | 100 | | Minus |
BO15481.pep Sequence
Translation from 16 to 2734
> BO15481.pep
MMIQEPVQAAIWHCLNYYDFKDAVFLSERLCSEVESDETIFLLATSYFRS
NQVHQAYWLLKEKARRSPQCRFLQAKCAYELKKYAEAESALISTGFADAK
NCDELQRDFGDLACFAYQLMAQICMRTERNKLAVSALRRALKLNPFMWHA
FADLCLLGQDTDAAAIFQIHSTDVFNTCQGSSVNANAMVLFGAEQQGQQH
QERQSLITNLSNVSNYILTTPVDQQQQQINQNQNQHHNSNMVTPINNNNN
NNNLNSSISMLRGGLVQNSSMLAMLEDTPMGAPQDPAGQYQQNQQLYDMS
SGTPFRKQFKYLSAISPPTPSFGIMPLTSPCTGNDGSFIGNHTPVMNISY
SPMPQMLVEVNQEPKMMGKKLKTHVGGLINRKEGSLNKPAVFTQAGNITP
RTPNNNNVGNNGNMNVPPNPNAAVRRSSRLFSNSYSVKENNKSPNIANKF
VQPRSPPRKAKSRMTKICLNNELIEDKSHHLSEKRKEKVETITSSGANNN
SGGRSAAEEAKVLLNNSLNNAQTMAHQLMGLKKQSADGLMALLRGLAEAY
QLLSNFQCKAAIKQLETTIPKHHLNSSWVQSLIGLARYEMREYEAAVAIF
ETIHKTEPCRLDYMEIYSSSLWHLQREVELSALAQDLINQDKTSPVTWCV
SGNCFSLQKEHETAIKFFKRAVQVDPDFVYSYTLLGHELVLTEEFDKAMD
YFRAAVVRDPRHYNAWYGIGTIYSKQEKYELAEIHYVKALKINPQNSVIL
VHIGAMQFYMKKKDLSLQTLNTAATLDPKNPLTRFHRGSIYFSLGKYQEA
LRELEELKEVVPKESVVFYLIGKIHKTLGNMDLALMHFSWATDLDPKGAN
NQIKDAFDSMAHPSCCPANTTALDVDLEPTSERSDDSTQAQQDGSYDSDY
ASFLDH
BO15481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-PB | 900 | CG8610-PB | 1..900 | 1..900 | 4706 | 100 | Plus |
| Cdc27-PA | 900 | CG8610-PA | 1..900 | 1..900 | 4706 | 100 | Plus |
| Cdc23-PB | 678 | CG2508-PB | 249..474 | 576..801 | 282 | 25.9 | Plus |
| Cdc23-PA | 678 | CG2508-PA | 249..474 | 576..801 | 282 | 25.9 | Plus |
