Clone BO15485 Report

Search the DGRC for BO15485

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptUGP-RA
Protein status:BO15485.pep: validated full length
Sequenced Size:1594

Clone Sequence Records

BO15485.3prime Sequence

805 bp (799 high quality bases) assembled on 2006-05-29

> BO15485.3prime
ATGGTCTAGAAAGCTTGCGTGGTCCAAGATGCGCATATTGCCAGATACAA
TCTTGTTCTCCAGAATGGCTCCAGCTGGGATATCGATACGATCGCCATGG
TTAGCAATGATGATCACAGTGCCGCGCAAAGAAACGCCACGACCGAAAGT
CACATCTCCGCTCACGGTCAAGTGATCCAGCTCAATGATGTCCGGGATGT
TGGCAAAGCGACCCAGGAACTCCTTGACCTTCGAGAAGTGGTTCTCTCCC
AGCTTGACGAGCGGCGTGGTAGGGAACATTCGCTGTGGCGACATTACCAG
GCTGCCGTTCTTAAGCGTATATAAATTTGACATGACCAGCAGCAGATCTG
AAGATTTCTTCACGGGCAAGAAACGGGAACGCGGCACATTGATGCCGATG
GCGCCATCAAAGCACTTCATGGCCGCACCCACAGCAGTCTCCAGCTGAAT
GACACGGGTTCCGTTCTCCAGCGTCTTGTTGTTCACAATAATTTCCATGT
TTAAGGTACGCTCACGCAAAACGCGATCAATGGCTGCCAGGTTGGCCCAA
ATGTTGTTGGTGTTAAAGAACTTGAAGGTCTTAACCGACTTAAAGTCATC
CACATGCTCTGGTGGCACTTGAGCAATTTCCAACAGGCGCAGCTTGTTTT
CCATTTGAATGAGAGTACCACCCTTAACGTCAGCACGGGTCTTGTCGGTG
ACCTCCATGACAAACTCCACTGGAGTAGTGGCCCGCTCCTCGCCCACCAG
CTTATTGAGGATGTTCAGATCGACGGTGGCGCCCAGGTTATCGATGTTGG
ACAAG

BO15485.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4347-PC 1542 UGP-RC 753..1539 805..19 3935 100 Minus
CG4347-PA 1563 UGP-RA 774..1560 805..19 3935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RE 2686 CG4347-RE 1021..1807 805..19 3935 100 Minus
UGP-RD 2093 CG4347-RD 1041..1827 805..19 3935 100 Minus
UGP-RA 2102 CG4347-RA 1027..1813 805..19 3935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9351917..9352329 123..535 2065 100 Plus
3L 28110227 3L 9352405..9352545 534..674 705 100 Plus
3L 28110227 3L 9352601..9352734 672..805 670 100 Plus
3L 28110227 3L 9351746..9351850 19..123 525 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:37:20 has no hits.

BO15485.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:13 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4347-PC 753..1542 15..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:41 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4347-PA 774..1563 15..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:00:20 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1027..1816 15..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:21 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1027..1816 15..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:21 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9351742..9351850 15..123 98 <- Plus
3L 9351918..9352327 124..533 100 <- Plus
3L 9352405..9352543 534..672 100 <- Plus
3L 9352602..9352734 673..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:00:20 Download gff for BO15485.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9344842..9344950 15..123 98 <- Plus
arm_3L 9345018..9345427 124..533 100 <- Plus
arm_3L 9345505..9345643 534..672 100 <- Plus
arm_3L 9345702..9345834 673..805 100   Plus

BO15485.5prime Sequence

888 bp (848 high quality bases) assembled on 2006-05-29

> BO15485.5prime
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGA
TCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTG
GGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTC
GGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACA
AGACCTACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACC
GACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCA
GATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACT
ACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGG
TATCCACCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCT
GCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACA
TCGATAACCTGNGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTG
GGCGAGGAGCGGGGCACTACTCCAGTGGAGTTTGTCAT

BO15485.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4347-PA 1563 UGP-RA 1..872 17..888 4316 99.7 Plus
CG4347-PC 1542 UGP-RC 28..851 65..888 4076 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RA 2102 CG4347-RA 254..1125 17..888 4334 99.8 Plus
UGP-RE 2686 CG4347-RE 254..1119 17..888 4234 99.1 Plus
UGP-RC 2099 CG4347-RC 322..1145 65..888 4094 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9352882..9353230 696..348 1745 100 Minus
3L 28110227 3L 9353888..9354074 251..65 935 100 Minus
3L 28110227 3L 9352636..9352827 888..697 934 99 Minus
3L 28110227 3L 9353738..9353831 343..250 470 100 Minus
3L 28110227 3L 9357581..9357630 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:35:33 has no hits.

BO15485.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:14 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4347-PA 1..872 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:43 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4347-PA 1..872 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:27 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 244..1125 7..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:59 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 244..1125 7..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:59 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9352636..9352827 697..888 98 <- Minus
3L 9352882..9353228 350..696 100 <- Minus
3L 9353729..9353829 252..349 96 <- Minus
3L 9353888..9354074 65..251 100 <- Minus
3L 9357583..9357640 7..64 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:27 Download gff for BO15485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9345736..9345927 697..888 98 <- Minus
arm_3L 9345982..9346328 350..696 100 <- Minus
arm_3L 9346829..9346929 252..349 96 <- Minus
arm_3L 9346988..9347174 65..251 100 <- Minus
arm_3L 9350683..9350740 7..64 93   Minus

BO15485.complete Sequence

1594 bp (1594 high quality bases) assembled on 2006-08-25

GenBank Submission: FJ633492

> BO15485.complete
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGA
TCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTG
GGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTC
GGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACA
AGACCTACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACC
GACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCA
GATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACT
ACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGG
TATCCACCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCT
GCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACA
TCGATAACCTGGGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTG
GGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCATGGAGGTCACCGA
CAAGACCCGTGCTGACGTTAAGGGTGGTACTCTCATTCAAATGGAAAACA
AGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGAGCATGTGGATGAC
TTTAAGTCGGTTAAGACCTTCAAGTTCTTTAACACCAACAACATTTGGGC
CAACCTGGCAGCCATTGATCGCGTTTTGCGTGAGCGTACCTTAAACATGG
AAATTATTGTGAACAACAAGACGCTGGAGAACGGAACCCGTGTCATTCAG
CTGGAGACTGCTGTGGGTGCGGCCATGAAGTGCTTTGATGGCGCCATCGG
CATCAATGTGCCGCGTTCCCGTTTCTTGCCCGTGAAGAAATCTTCAGATC
TGCTGCTGGTCATGTCAAATTTATATACGCTTAAGAACGGCAGCCTGGTA
ATGTCGCCACAGCGAATGTTCCCTACCACGCCGCTCGTCAAGCTGGGAGA
GAACCACTTCTCGAAGGTCAAGGAGTTCCTGGGTCGCTTTGCCAACATCC
CGGACATCATTGAGCTGGATCACTTGACCGTGAGCGGAGATGTGACTTTC
GGTCGTGGCGTTTCTTTGCGCGGCACTGTGATCATCATTGCTAACCATGG
CGATCGTATCGATATCCCAGCTGGAGCCATTCTGGAGAACAAGATTGTAT
CTGGCAATATGCGCATCTTGGACCACGCAAGCTTTCTAGACCAT

BO15485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RA 1563 CG4347-PA 1..1560 17..1576 7800 100 Plus
UGP-RE 1557 CG4347-PE 1..1554 17..1576 7675 99.6 Plus
UGP-RC 1542 CG4347-PC 28..1539 65..1576 7560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RA 2102 CG4347-RA 254..1813 17..1576 7800 100 Plus
UGP-RE 2686 CG4347-RE 254..1807 17..1576 7675 99.6 Plus
UGP-RC 2099 CG4347-RC 322..1833 65..1576 7560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9351917..9352329 1472..1060 2065 100 Minus
3L 28110227 3L 9352882..9353230 696..348 1745 100 Minus
3L 28110227 3L 9352601..9352827 923..697 1135 100 Minus
3L 28110227 3L 9353888..9354074 251..65 935 100 Minus
3L 28110227 3L 9352405..9352545 1061..921 705 100 Minus
3L 28110227 3L 9351746..9351850 1576..1472 525 100 Minus
3L 28110227 3L 9353738..9353831 343..250 470 100 Minus
3L 28110227 3L 9357581..9357630 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:23:11 has no hits.

BO15485.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:27 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 1..1563 17..1580 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:02 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 252..1824 7..1580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:36 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 254..1813 17..1578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:27 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 252..1824 7..1580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:15 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RA 254..1813 17..1578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:15 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9351744..9351850 1472..1578 98 <- Minus
3L 9351918..9352327 1062..1471 100 <- Minus
3L 9352405..9352543 923..1061 100 <- Minus
3L 9352602..9352827 697..922 100 <- Minus
3L 9352882..9353228 350..696 100 <- Minus
3L 9353729..9353829 252..349 96 <- Minus
3L 9353888..9354074 65..251 100 <- Minus
3L 9357583..9357630 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:36 Download gff for BO15485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9346988..9347174 65..251 100 <- Minus
arm_3L 9350683..9350730 17..64 100   Minus
arm_3L 9344844..9344950 1472..1578 98 <- Minus
arm_3L 9345018..9345427 1062..1471 100 <- Minus
arm_3L 9345505..9345643 923..1061 100 <- Minus
arm_3L 9345702..9345927 697..922 100 <- Minus
arm_3L 9345982..9346328 350..696 100 <- Minus
arm_3L 9346829..9346929 252..349 96 <- Minus

BO15485.pep Sequence

Translation from 16 to 1594

> BO15485.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFL
DLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFN
QSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFI
EEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRAD
VKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAI
DRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPR
SRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSK
VKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDI
PAGAILENKIVSGNMRILDHASFLDH

BO15485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PA 520 CG4347-PA 1..520 1..520 2686 100 Plus
UGP-PE 518 CG4347-PE 1..518 1..520 2662 99.6 Plus
UGP-PC 513 CG4347-PC 8..513 15..520 2608 99.8 Plus
UGP-PD 511 CG4347-PD 8..511 15..520 2584 99.4 Plus