Clone Sequence Records
BO15485.3prime Sequence
805 bp (799 high quality bases) assembled on 2006-05-29
> BO15485.3prime
ATGGTCTAGAAAGCTTGCGTGGTCCAAGATGCGCATATTGCCAGATACAA
TCTTGTTCTCCAGAATGGCTCCAGCTGGGATATCGATACGATCGCCATGG
TTAGCAATGATGATCACAGTGCCGCGCAAAGAAACGCCACGACCGAAAGT
CACATCTCCGCTCACGGTCAAGTGATCCAGCTCAATGATGTCCGGGATGT
TGGCAAAGCGACCCAGGAACTCCTTGACCTTCGAGAAGTGGTTCTCTCCC
AGCTTGACGAGCGGCGTGGTAGGGAACATTCGCTGTGGCGACATTACCAG
GCTGCCGTTCTTAAGCGTATATAAATTTGACATGACCAGCAGCAGATCTG
AAGATTTCTTCACGGGCAAGAAACGGGAACGCGGCACATTGATGCCGATG
GCGCCATCAAAGCACTTCATGGCCGCACCCACAGCAGTCTCCAGCTGAAT
GACACGGGTTCCGTTCTCCAGCGTCTTGTTGTTCACAATAATTTCCATGT
TTAAGGTACGCTCACGCAAAACGCGATCAATGGCTGCCAGGTTGGCCCAA
ATGTTGTTGGTGTTAAAGAACTTGAAGGTCTTAACCGACTTAAAGTCATC
CACATGCTCTGGTGGCACTTGAGCAATTTCCAACAGGCGCAGCTTGTTTT
CCATTTGAATGAGAGTACCACCCTTAACGTCAGCACGGGTCTTGTCGGTG
ACCTCCATGACAAACTCCACTGGAGTAGTGGCCCGCTCCTCGCCCACCAG
CTTATTGAGGATGTTCAGATCGACGGTGGCGCCCAGGTTATCGATGTTGG
ACAAG
BO15485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4347-PC | 1542 | UGP-RC | 753..1539 | 805..19 | 3935 | 100 | Minus |
CG4347-PA | 1563 | UGP-RA | 774..1560 | 805..19 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-RE | 2686 | CG4347-RE | 1021..1807 | 805..19 | 3935 | 100 | Minus |
UGP-RD | 2093 | CG4347-RD | 1041..1827 | 805..19 | 3935 | 100 | Minus |
UGP-RA | 2102 | CG4347-RA | 1027..1813 | 805..19 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9351917..9352329 | 123..535 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 9352405..9352545 | 534..674 | 705 | 100 | Plus |
3L | 28110227 | 3L | 9352601..9352734 | 672..805 | 670 | 100 | Plus |
3L | 28110227 | 3L | 9351746..9351850 | 19..123 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:37:20 has no hits.
BO15485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:13 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4347-PC | 753..1542 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:41 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4347-PA | 774..1563 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:00:20 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 1027..1816 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:21 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 1027..1816 | 15..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:21 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9351742..9351850 | 15..123 | 98 | <- | Plus |
3L | 9351918..9352327 | 124..533 | 100 | <- | Plus |
3L | 9352405..9352543 | 534..672 | 100 | <- | Plus |
3L | 9352602..9352734 | 673..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:00:20 Download gff for
BO15485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9344842..9344950 | 15..123 | 98 | <- | Plus |
arm_3L | 9345018..9345427 | 124..533 | 100 | <- | Plus |
arm_3L | 9345505..9345643 | 534..672 | 100 | <- | Plus |
arm_3L | 9345702..9345834 | 673..805 | 100 | | Plus |
BO15485.5prime Sequence
888 bp (848 high quality bases) assembled on 2006-05-29
> BO15485.5prime
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGA
TCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTG
GGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTC
GGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACA
AGACCTACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACC
GACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCA
GATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACT
ACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGG
TATCCACCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCT
GCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACA
TCGATAACCTGNGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTG
GGCGAGGAGCGGGGCACTACTCCAGTGGAGTTTGTCAT
BO15485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4347-PA | 1563 | UGP-RA | 1..872 | 17..888 | 4316 | 99.7 | Plus |
CG4347-PC | 1542 | UGP-RC | 28..851 | 65..888 | 4076 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-RA | 2102 | CG4347-RA | 254..1125 | 17..888 | 4334 | 99.8 | Plus |
UGP-RE | 2686 | CG4347-RE | 254..1119 | 17..888 | 4234 | 99.1 | Plus |
UGP-RC | 2099 | CG4347-RC | 322..1145 | 65..888 | 4094 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9352882..9353230 | 696..348 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 9353888..9354074 | 251..65 | 935 | 100 | Minus |
3L | 28110227 | 3L | 9352636..9352827 | 888..697 | 934 | 99 | Minus |
3L | 28110227 | 3L | 9353738..9353831 | 343..250 | 470 | 100 | Minus |
3L | 28110227 | 3L | 9357581..9357630 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:35:33 has no hits.
BO15485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:14 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4347-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:43 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4347-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:27 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 244..1125 | 7..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:59 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 244..1125 | 7..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:59 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9352636..9352827 | 697..888 | 98 | <- | Minus |
3L | 9352882..9353228 | 350..696 | 100 | <- | Minus |
3L | 9353729..9353829 | 252..349 | 96 | <- | Minus |
3L | 9353888..9354074 | 65..251 | 100 | <- | Minus |
3L | 9357583..9357640 | 7..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:27 Download gff for
BO15485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9345736..9345927 | 697..888 | 98 | <- | Minus |
arm_3L | 9345982..9346328 | 350..696 | 100 | <- | Minus |
arm_3L | 9346829..9346929 | 252..349 | 96 | <- | Minus |
arm_3L | 9346988..9347174 | 65..251 | 100 | <- | Minus |
arm_3L | 9350683..9350740 | 7..64 | 93 | | Minus |
BO15485.complete Sequence
1594 bp (1594 high quality bases) assembled on 2006-08-25
GenBank Submission: FJ633492
> BO15485.complete
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGA
TCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTG
GGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTC
GGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACA
AGACCTACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACC
GACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCA
GATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACT
ACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGG
TATCCACCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCT
GCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACA
TCGATAACCTGGGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTG
GGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCATGGAGGTCACCGA
CAAGACCCGTGCTGACGTTAAGGGTGGTACTCTCATTCAAATGGAAAACA
AGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGAGCATGTGGATGAC
TTTAAGTCGGTTAAGACCTTCAAGTTCTTTAACACCAACAACATTTGGGC
CAACCTGGCAGCCATTGATCGCGTTTTGCGTGAGCGTACCTTAAACATGG
AAATTATTGTGAACAACAAGACGCTGGAGAACGGAACCCGTGTCATTCAG
CTGGAGACTGCTGTGGGTGCGGCCATGAAGTGCTTTGATGGCGCCATCGG
CATCAATGTGCCGCGTTCCCGTTTCTTGCCCGTGAAGAAATCTTCAGATC
TGCTGCTGGTCATGTCAAATTTATATACGCTTAAGAACGGCAGCCTGGTA
ATGTCGCCACAGCGAATGTTCCCTACCACGCCGCTCGTCAAGCTGGGAGA
GAACCACTTCTCGAAGGTCAAGGAGTTCCTGGGTCGCTTTGCCAACATCC
CGGACATCATTGAGCTGGATCACTTGACCGTGAGCGGAGATGTGACTTTC
GGTCGTGGCGTTTCTTTGCGCGGCACTGTGATCATCATTGCTAACCATGG
CGATCGTATCGATATCCCAGCTGGAGCCATTCTGGAGAACAAGATTGTAT
CTGGCAATATGCGCATCTTGGACCACGCAAGCTTTCTAGACCAT
BO15485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-RA | 1563 | CG4347-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
UGP-RE | 1557 | CG4347-PE | 1..1554 | 17..1576 | 7675 | 99.6 | Plus |
UGP-RC | 1542 | CG4347-PC | 28..1539 | 65..1576 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-RA | 2102 | CG4347-RA | 254..1813 | 17..1576 | 7800 | 100 | Plus |
UGP-RE | 2686 | CG4347-RE | 254..1807 | 17..1576 | 7675 | 99.6 | Plus |
UGP-RC | 2099 | CG4347-RC | 322..1833 | 65..1576 | 7560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9351917..9352329 | 1472..1060 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 9352882..9353230 | 696..348 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 9352601..9352827 | 923..697 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 9353888..9354074 | 251..65 | 935 | 100 | Minus |
3L | 28110227 | 3L | 9352405..9352545 | 1061..921 | 705 | 100 | Minus |
3L | 28110227 | 3L | 9351746..9351850 | 1576..1472 | 525 | 100 | Minus |
3L | 28110227 | 3L | 9353738..9353831 | 343..250 | 470 | 100 | Minus |
3L | 28110227 | 3L | 9357581..9357630 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:11 has no hits.
BO15485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:27 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 1..1563 | 17..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:02 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 252..1824 | 7..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:36 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 254..1813 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:27 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 252..1824 | 7..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:15 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RA | 254..1813 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:15 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9351744..9351850 | 1472..1578 | 98 | <- | Minus |
3L | 9351918..9352327 | 1062..1471 | 100 | <- | Minus |
3L | 9352405..9352543 | 923..1061 | 100 | <- | Minus |
3L | 9352602..9352827 | 697..922 | 100 | <- | Minus |
3L | 9352882..9353228 | 350..696 | 100 | <- | Minus |
3L | 9353729..9353829 | 252..349 | 96 | <- | Minus |
3L | 9353888..9354074 | 65..251 | 100 | <- | Minus |
3L | 9357583..9357630 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:36 Download gff for
BO15485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9346988..9347174 | 65..251 | 100 | <- | Minus |
arm_3L | 9350683..9350730 | 17..64 | 100 | | Minus |
arm_3L | 9344844..9344950 | 1472..1578 | 98 | <- | Minus |
arm_3L | 9345018..9345427 | 1062..1471 | 100 | <- | Minus |
arm_3L | 9345505..9345643 | 923..1061 | 100 | <- | Minus |
arm_3L | 9345702..9345927 | 697..922 | 100 | <- | Minus |
arm_3L | 9345982..9346328 | 350..696 | 100 | <- | Minus |
arm_3L | 9346829..9346929 | 252..349 | 96 | <- | Minus |
BO15485.pep Sequence
Translation from 16 to 1594
> BO15485.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFL
DLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFN
QSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFI
EEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRAD
VKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAI
DRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPR
SRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSK
VKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDI
PAGAILENKIVSGNMRILDHASFLDH
BO15485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-PA | 520 | CG4347-PA | 1..520 | 1..520 | 2686 | 100 | Plus |
UGP-PE | 518 | CG4347-PE | 1..518 | 1..520 | 2662 | 99.6 | Plus |
UGP-PC | 513 | CG4347-PC | 8..513 | 15..520 | 2608 | 99.8 | Plus |
UGP-PD | 511 | CG4347-PD | 8..511 | 15..520 | 2584 | 99.4 | Plus |