Clone Sequence Records
BO15491.3prime Sequence
828 bp (732 high quality bases) assembled on 2006-05-29
> BO15491.3prime
ATGGTCTAGAAAGCTTGCATCAATATCGCCATCATTTGCCTCTTTGGCGT
TGGCCGCTGCATTTGCGCCACCACTTGTGTTGTGAATCTTCTCATTGGTC
TCGGCCTGCTTTTGACGCTCGTAGGCGCGAACATCCTCCAGGGTCATGCC
ATGCCATTCGTCCACCCATGCGAAAGCCTGCCGGTGTCCCAGTAGTAGAA
TCTCCCGAATTCCGCGCTGAATGAAGTCCTCCACTTTGGTCTGCAGACCC
CATACCTCAAAGCTGGCGTGGACCACCTTGTAGGAGCACATAATGGGCTT
GTCCGTTTCCCGCCATCCTTCAATCAATGGACCACGGTTTGTCTTTTCGG
ATTTGAAGAACTTGGGATCTTCTTCCTTCTTATAATGCTTGGCACTGACC
TCATCGAACGCTATGTCCAAATGATCCACAGTTCGAACTTTGAGCTCATC
TTCAGTAAGATCCAGACAGTTTTCTGTGCTGCCATTATTGTCCTCGTACT
TAGTTTTGATGAGCACATTTAGTTTGGGTATAAAGGAACACGTGTATTCT
GTTAGCGTGTACGGATAGTAGTTCCATGATTTCTCTATCACATAGAAGAC
TCGGGGGCAAATGGCCTGGATCCAGTAGGGCAGTCGGCTGGACAAGTGAA
TGTGCTTCTCCGTGTACTGGCCCTTGCCGTGAACGGAATCCTCGCAGGGC
TTGTTCTCCACCACCTCAACGCCCTCGCCCTCCTCCGATTGCTCCAGACT
GTGGCGCGCTATCATATAAAGCTGTCCGATCTTGTACTCCTCCACCGTAA
GCGGCATGCATACGCGATACTCCTTGAT
BO15491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17818-PA | 822 | rdgBbeta-RA | 10..819 | 828..19 | 4025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 118..927 | 828..19 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696231..17696550 | 19..338 | 1600 | 100 | Plus |
| 2R | 25286936 | 2R | 17697985..17698135 | 638..788 | 740 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17696612..17696741 | 339..468 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 17697832..17697923 | 549..640 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 17696801..17696873 | 469..541 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 17698204..17698245 | 787..828 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:30:11 has no hits.
BO15491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:19 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 10..822 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:48 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 10..822 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:54 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 118..927 | 19..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:21 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 118..927 | 19..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:21 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17697985..17698133 | 638..786 | 99 | <- | Plus |
| 2R | 17698204..17698245 | 787..828 | 100 | | Plus |
| 2R | 17696231..17696550 | 19..338 | 100 | <- | Plus |
| 2R | 17696612..17696741 | 339..468 | 100 | <- | Plus |
| 2R | 17696801..17696872 | 469..540 | 100 | <- | Plus |
| 2R | 17697825..17697920 | 541..637 | 93 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:54 Download gff for
BO15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13583736..13584055 | 19..338 | 100 | <- | Plus |
| arm_2R | 13584117..13584246 | 339..468 | 100 | <- | Plus |
| arm_2R | 13584306..13584377 | 469..540 | 100 | <- | Plus |
| arm_2R | 13585330..13585425 | 541..637 | 93 | <- | Plus |
| arm_2R | 13585490..13585638 | 638..786 | 99 | <- | Plus |
| arm_2R | 13585709..13585750 | 787..828 | 100 | | Plus |
BO15491.5prime Sequence
813 bp (738 high quality bases) assembled on 2006-05-29
> BO15491.5prime
GAAGTTATCAGTCGACATGGTGCTAATCAAGGAGTATCGCGTATGCATGC
CGCTTACGGTGGAGGAGTACAAGATCGGACAGCTTTATATGATAGCGCGC
CACAGTCTGGAGCAATCGGAGGAGGGCGAGGGCGTTGAGGTGGTGGAGAA
CAAGCCCTGCGAGGATCCCGTTCACGGCAAGGGCCAGTACACGGAGAAGC
ACATTCACTTGTCCAGCCGACTGCCCTACTGGATCCAGGCCATTTGCCCC
CGAGTCTTCTATGTGATAGAGAAATCATGGAACTACTATCCGTACACGCT
AACAGAATACACGTGTTCCTTTATACCCAAACTAAATGTGCTCATCAAAA
CTAAGTACGAGGACAATAATGGCAGCACAGAAAACTGTCTGGATCTTACT
GAAGATGAGCTCAAAGTTCGAACTGTGGATCATTTGGACATAGCGTTCGA
TGAGGTCAGTGCCAAGCATTATAAGAAGGAAGAAGATCCCAAGTTCTTCA
AATCCGAAAAGACAAACCGTGGTCCATTGATTGAAGGATGGCGGGAAACG
GACAAGCCCATTATGTGCTCCTACAAGGTGGTCCACGCCAGCTTTGAGGT
ATGGGGTCTGCAGACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGG
AGATTCTACTACTGGGACACCGGCAGGCTTTCGCATGGGTGGACGAATGG
CATGGCATGACCCTGGAGGATGTTCGCGCCTACGAGCGTCNAAAGCAGGC
CGAGACCAATGAGAAGATTCACAACACAAGTGGTGGCGCATATGCAGCGG
CCAACGCCAAAGA
BO15491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17818-PA | 822 | rdgBbeta-RA | 1..797 | 17..813 | 3941 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..905 | 17..813 | 3959 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696253..17696550 | 813..516 | 1464 | 99.3 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 216..66 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 515..386 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 305..214 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 385..313 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:19:17 has no hits.
BO15491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:20 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:50 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:29 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..904 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:46:34 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..904 | 9..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:46:34 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17696254..17696550 | 516..812 | 99 | <- | Minus |
| 2R | 17696612..17696741 | 386..515 | 100 | <- | Minus |
| 2R | 17696801..17696872 | 314..385 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 217..313 | 93 | <- | Minus |
| 2R | 17697985..17698133 | 68..216 | 100 | <- | Minus |
| 2R | 17698204..17698261 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:29 Download gff for
BO15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13583759..13584055 | 516..812 | 99 | <- | Minus |
| arm_2R | 13584117..13584246 | 386..515 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 314..385 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 217..313 | 93 | <- | Minus |
| arm_2R | 13585490..13585638 | 68..216 | 100 | <- | Minus |
| arm_2R | 13585709..13585766 | 9..67 | 93 | | Minus |
BO15491.complete Sequence
853 bp (853 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633493
> BO15491.complete
GAAGTTATCAGTCGACATGGTGCTAATCAAGGAGTATCGCGTATGCATGC
CGCTTACGGTGGAGGAGTACAAGATCGGACAGCTTTATATGATAGCGCGC
CACAGTCTGGAGCAATCGGAGGAGGGCGAGGGCGTTGAGGTGGTGGAGAA
CAAGCCCTGCGAGGATCCCGTTCACGGCAAGGGCCAGTACACGGAGAAGC
ACATTCACTTGTCCAGCCGACTGCCCTACTGGATCCAGGCCATTTGCCCC
CGAGTCTTCTATGTGATAGAGAAATCATGGAACTACTATCCGTACACGCT
AACAGAATACACGTGTTCCTTTATACCCAAACTAAATGTGCTCATCAAAA
CTAAGTACGAGGACAATAATGGCAGCACAGAAAACTGTCTGGATCTTACT
GAAGATGAGCTCAAAGTTCGAACTGTGGATCATTTGGACATAGCGTTCGA
TGAGGTCAGTGCCAAGCATTATAAGAAGGAAGAAGATCCCAAGTTCTTCA
AATCCGAAAAGACAAACCGTGGTCCATTGATTGAAGGATGGCGGGAAACG
GACAAGCCCATTATGTGCTCCTACAAGGTGGTCCACGCCAGCTTTGAGGT
ATGGGGTCTGCAGACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGG
AGATTCTACTACTGGGACACCGGCAGGCTTTCGCATGGGTGGACGAATGG
CATGGCATGACCCTGGAGGATGTTCGCGCCTACGAGCGTCAAAAGCAGGC
CGAGACCAATGAGAAGATTCACAACACAAGTGGTGGCGCAAATGCAGCGG
CCAACGCCAAAGAGGCAAATGATGGCGATATTGATGCAAGCTTTCTAGAC
CAT
BO15491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 822 | CG17818-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..927 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696231..17696550 | 835..516 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 216..66 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 515..386 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 305..214 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 385..313 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:12:10 has no hits.
BO15491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:41 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:48 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..926 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:34 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 109..927 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:41 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..926 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:39 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 109..927 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:39 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17697985..17698133 | 68..216 | 100 | <- | Minus |
| 2R | 17698204..17698254 | 17..67 | 100 | | Minus |
| 2R | 17696228..17696550 | 516..837 | 99 | <- | Minus |
| 2R | 17696612..17696741 | 386..515 | 100 | <- | Minus |
| 2R | 17696801..17696872 | 314..385 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 217..313 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:34 Download gff for
BO15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13585490..13585638 | 68..216 | 100 | <- | Minus |
| arm_2R | 13585709..13585759 | 17..67 | 100 | | Minus |
| arm_2R | 13583733..13584055 | 516..837 | 99 | <- | Minus |
| arm_2R | 13584117..13584246 | 386..515 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 314..385 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 217..313 | 93 | <- | Minus |
BO15491.pep Sequence
Translation from 16 to 853
> BO15491.pep
MVLIKEYRVCMPLTVEEYKIGQLYMIARHSLEQSEEGEGVEVVENKPCED
PVHGKGQYTEKHIHLSSRLPYWIQAICPRVFYVIEKSWNYYPYTLTEYTC
SFIPKLNVLIKTKYEDNNGSTENCLDLTEDELKVRTVDHLDIAFDEVSAK
HYKKEEDPKFFKSEKTNRGPLIEGWRETDKPIMCSYKVVHASFEVWGLQT
KVEDFIQRGIREILLLGHRQAFAWVDEWHGMTLEDVRAYERQKQAETNEK
IHNTSGGANAAANAKEANDGDIDASFLDH
BO15491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-PA | 273 | CG17818-PA | 1..273 | 1..273 | 1471 | 100 | Plus |
| rdgB-PG | 1237 | CG11111-PG | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PE | 1241 | CG11111-PE | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PF | 1250 | CG11111-PF | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PB | 1250 | CG11111-PB | 1..267 | 2..251 | 607 | 45.7 | Plus |
