Clone Sequence Records
BO15494.3prime Sequence
924 bp (706 high quality bases) assembled on 2006-05-30
> BO15494.3prime
ATGGTCTAGAAAGCTTGCCGAGCTCTGCTCCAGACCACTTGTCTTTTCAC
CACCCACCTTGCGCTCCTGTGCCTCAAAGTCGACGGAGCGCGGCTGGATG
GGTGCGTTATTGAACGGCTGCACCTCTCCGGATGCCCAAATGCAGTAGAT
CACGGCAGTGAAGCAGAGCACGCCAAAGGCCACCCAGAACACAAGACGCC
ACTCCAGCAGCGAGGCATTTGGTGTCATCACGCCCACCAGGTACGGCGTG
ATCACTCCGGTGATTGCTCCAATTCCGTTTGTGATGGCCATGAGCGTTCC
GGCATAGTTCGGACTCATGTCCAGGGGACTCAGCTTCATGCCCGCATAGT
AGGCGCCCATCAGACCCATGCAGATGGTGAAGAGCACCACGACGAGGACA
CGATCGCAGCCGGCGTAGGAGGCGCCCACCATGAAGATGGCCGGACCGAA
GGCAGCCAGACCAGTCATCACCTTTCGGGTGTTTGTGGTGCTCAACACGC
CACGGCGGATCATCCAATCGGCCACAAAGCCACTGCCCACGGAAACGATC
CACATCATGACGTAGGGCAGCGAGGAGTAAAGACCGTTGGCCTTGATCGA
GAACTGAAGAACGTCGGCCATGTACTTCGGCAGATCCGTCACCATGATGT
AGAAGCCCCAATCGTGACCAATCTGGGCGGCCACCAGGGCAAACATGGGC
AGGTTGGTGAGGATGGCCTTCCAGGGAGTGGGGGGCAGGTCCTCGTTGCG
GCTAATGGTTCCAATCTCCTTGACCAGATACTCGCGCTCGCTGGGCTTGA
TGAAGGGATGCGACGTGGGATCGCTGTAACAAAGGAACATAAAGATGGCA
AACCAGACAACACCCAAACCCCCGAAGAAGTAAAAAACAAACTCCCAACC
ATAGGCGTCTATAAACCCGCCAAA
BO15494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5304-PA | 1491 | l(2)01810-RA | 585..1488 | 922..19 | 4370 | 99.3 | Minus |
CG9254-PA | 1446 | CG9254-RA | 1146..1184 | 370..332 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmGlut-RA | 2426 | CG5304-RA | 929..1832 | 922..19 | 4430 | 99.3 | Minus |
CG9254-RA | 1684 | CG9254-RA | 1039..1596 | 666..109 | 690 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12032646..12033270 | 840..216 | 3095 | 99.7 | Minus |
2L | 23513712 | 2L | 12033331..12033528 | 216..19 | 990 | 100 | Minus |
2L | 23513712 | 2L | 13595591..13596148 | 109..666 | 690 | 74.9 | Plus |
2L | 23513712 | 2L | 12032496..12032577 | 922..841 | 350 | 95.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:19:32 has no hits.
BO15494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:25 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5304-PA | 586..1491 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:58 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5304-PA | 586..1491 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:03 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 930..1836 | 14..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:43 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 930..1836 | 14..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:43 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12032497..12032577 | 841..921 | 95 | -> | Minus |
2L | 12032646..12033269 | 217..840 | 99 | -> | Minus |
2L | 12033331..12033532 | 14..216 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:03 Download gff for
BO15494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12032497..12032577 | 841..921 | 95 | -> | Minus |
arm_2L | 12032646..12033269 | 217..840 | 99 | -> | Minus |
arm_2L | 12033331..12033532 | 14..216 | 99 | | Minus |
BO15494.5prime Sequence
851 bp (802 high quality bases) assembled on 2006-05-29
> BO15494.5prime
GAAGTTATCAGTCGACATGACGCAACAGCCACAATGGGGCATAAGCCTAT
CGAGGTATTTCGTGATACCCCAGCGAGTGATCCTGGCCATCATGGGCTTC
TTGGCCATCCTGAATGCCTACACGATGCGCGTCTGTCTATCACAGGCCAT
CACGGTGCTGGTGGTCAAGAAGAACTCAACGGATGACGATTCTGAGGCGA
TCTGCGAACCCGATGACATCGACGAGGGAACCAGTGTTGGTGGCGATTTC
GAATGGTCCGAGGAGCTGCAAGGTTTGATCCTGTCCTCATTCTACATCGG
TTACATTGTCACCCACATTCCCGGCGGTCTGCTGGCCGAGAAGTTCGGTG
GCAAATGGACCCTGGGCCTTGGCATTCTGTCCACCGCCGTGTTCACCATG
CTAACGCCTTTGGCCATTAACAAGGGTGACTCCGACTGGCTGATTGTGAC
CCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTG
TCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCT
CTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTC
TGGCGTGTTTATAGACGCCTATGGTTGGGAGTTTGTCTTCTACTTCTTCG
GGGGTCTGGGTGTTGTCTGGTTTGCCATCTTTATGTTCCTCTGCTACAGC
GATCCCACGTCGCATCCCTTCATCAAGCCCAGCGAGCGCGAGTATCTGGT
CAAGGAGATTGGAACCATTAGCCGCAACGAGGACCTGCCCCCCACTCCCT
GGAAGGCCATCCTCACCAACCTGCCCATGTTTGCCCTGGTGGCCGCCCAG
A
BO15494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5304-PA | 1491 | l(2)01810-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmGlut-RA | 2426 | CG5304-RA | 341..1179 | 13..851 | 4180 | 99.9 | Plus |
CG9254-RA | 1684 | CG9254-RA | 211..356 | 29..174 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12032131..12032577 | 236..682 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 12031893..12032073 | 57..237 | 905 | 100 | Plus |
2L | 23513712 | 2L | 12032646..12032814 | 683..851 | 845 | 100 | Plus |
2L | 23513712 | 2L | 13596831..13596976 | 174..29 | 280 | 79.5 | Minus |
2L | 23513712 | 2L | 12027778..12027821 | 13..56 | 205 | 97.7 | Plus |
Blast to na_te.dros performed 2015-02-04 02:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 1827..1877 | 373..422 | 108 | 70.6 | Plus |
BO15494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:26 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5304-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:59 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5304-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:38 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 333..1178 | 7..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:59 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 333..1178 | 7..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:59 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12027770..12027821 | 7..56 | 92 | -> | Plus |
2L | 12031893..12032071 | 57..235 | 100 | -> | Plus |
2L | 12032131..12032577 | 236..682 | 100 | -> | Plus |
2L | 12032646..12032813 | 683..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:38 Download gff for
BO15494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12027770..12027821 | 7..56 | 92 | -> | Plus |
arm_2L | 12031893..12032071 | 57..235 | 100 | -> | Plus |
arm_2L | 12032131..12032577 | 236..682 | 100 | -> | Plus |
arm_2L | 12032646..12032813 | 683..850 | 100 | | Plus |
BO15494.complete Sequence
1522 bp (1522 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633495
> BO15494.complete
GAAGTTATCAGTCGACATGACGCAACAGCCACAATGGGGCATAAGCCTAT
CGAGGTATTTCGTGATACCCCAGCGAGTGATCCTGGCCATCATGGGCTTC
TTGGCCATCCTGAATGCCTACACGATGCGCGTCTGTCTATCACAGGCCAT
CACGGTGCTGGTGGTCAAGAAGAACTCAACGGATGACGATTCTGAGGCGA
TCTGCGAACCCGATGACATCGACGAGGGAACCAGTGTTGGTGGCGATTTC
GAATGGTCCGAGGAGCTGCAAGGTTTGATCCTGTCCTCATTCTACATCGG
TTACATTGTCACCCACATTCCCGGCGGTCTGCTGGCCGAGAAGTTCGGTG
GCAAATGGACCCTGGGCCTTGGCATTCTGTCCACCGCCGTGTTCACCATG
CTAACGCCTTTGGCCATTAACAAGGGTGACTCCGACTGGCTGATTGTGAC
CCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTG
TCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCT
CTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTC
TGGCGTGTTTATAGACGCCTATGGTTGGGAGTTTGTCTTCTACTTCTTCG
GGGGTCTGGGTGTTGTCTGGTTTGCCATCTTTATGTTCCTCTGCTACAGC
GATCCCACGTCGCATCCCTTCATCAAGCCCAGCGAGCGCGAGTATCTGGT
CAAGGAGATTGGAACCATTAGCCGCAACGAGGACCTGCCCCCCACTCCCT
GGAAGGCCATCCTCACCAACCTGCCCATGTTTGCCCTGGTGGCCGCCCAG
ATTGGTCACGATTGGGGCTTCTACATCATGGTGACGGATCTGCCGAAGTA
CATGGCCGACGTTCTTCAGTTCTCGATCAAGGCCAACGGTCTTTACTCCT
CGCTGCCCTACGTCATGATGTGGATCGTTTCCGTGGGCAGTGGCTTTGTG
GCCGATTGGATGATCCGCCGTGGCGTGTTGAGCACCACAAACACCCGAAA
GGTGATGACTGGTCTGGCTGCCTTCGGTCCGGCCATCTTCATGGTGGGCG
CCTCCTACGCCGGCTGCGATCGTGTCCTCGTCGTGGTGCTCTTCACCATC
TGCATGGGTCTGATGGGCGCCTACTATGCGGGCATGAAGCTGAGTCCCCT
GGACATGAGTCCGAACTATGCCGGAACGCTCATGGCCATCACAAACGGAA
TTGGAGCAATCACCGGAGTGATCACGCCGTACCTGGTGGGCGTGATGACA
CCAAATGCCTCGCTGCTGGAGTGGCGTCTTGTGTTCTGGGTGGCCTTTGG
CGTGCTCTGCTTCACTGCCGTGATCTACTGCATTTGGGCATCCGGAGAGG
TGCAGCCGTTCAATAACGCACCCATCCAGCCGCGCTCCGTCGACTTTGAG
GCACAGGAGCGCAAGGTGGGTGGTGAAAAGACAAGTGGTCTGGAGCAGAG
CTCGGCAAGCTTTCTAGACCAT
BO15494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmGlut-RA | 1491 | CG5304-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
CG9254-RA | 1446 | CG9254-PA | 850..1407 | 857..1414 | 690 | 74.9 | Plus |
CG9254-RA | 1446 | CG9254-PA | 22..167 | 29..174 | 280 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmGlut-RA | 2426 | CG5304-RA | 341..1832 | 13..1504 | 7445 | 99.9 | Plus |
CG9254-RA | 1684 | CG9254-RA | 1039..1596 | 857..1414 | 690 | 74.9 | Plus |
CG9254-RA | 1684 | CG9254-RA | 211..356 | 29..174 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12032646..12033270 | 683..1307 | 3125 | 100 | Plus |
2L | 23513712 | 2L | 12032131..12032577 | 236..682 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 12033331..12033528 | 1307..1504 | 990 | 100 | Plus |
2L | 23513712 | 2L | 12031893..12032073 | 57..237 | 905 | 100 | Plus |
2L | 23513712 | 2L | 13595591..13596148 | 1414..857 | 690 | 74.9 | Minus |
2L | 23513712 | 2L | 13596831..13596976 | 174..29 | 280 | 79.5 | Minus |
2L | 23513712 | 2L | 12027778..12027821 | 13..56 | 205 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:52 has no hits.
BO15494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:28 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)01810-RA | 1..1491 | 17..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:34 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)01810-RA | 331..1834 | 7..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:30 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 345..1832 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:28 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)01810-RA | 331..1834 | 7..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:05 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmGlut-RA | 345..1832 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:05 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12027782..12027821 | 17..56 | 100 | -> | Plus |
2L | 12031893..12032071 | 57..235 | 100 | -> | Plus |
2L | 12032131..12032577 | 236..682 | 100 | -> | Plus |
2L | 12032646..12033269 | 683..1306 | 100 | -> | Plus |
2L | 12033331..12033528 | 1307..1506 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:30 Download gff for
BO15494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12027782..12027821 | 17..56 | 100 | -> | Plus |
arm_2L | 12031893..12032071 | 57..235 | 100 | -> | Plus |
arm_2L | 12032131..12032577 | 236..682 | 100 | -> | Plus |
arm_2L | 12032646..12033269 | 683..1306 | 100 | -> | Plus |
arm_2L | 12033331..12033528 | 1307..1506 | 99 | | Plus |
BO15494.pep Sequence
Translation from 16 to 1522
> BO15494.pep
MTQQPQWGISLSRYFVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVV
KKNSTDDDSEAICEPDDIDEGTSVGGDFEWSEELQGLILSSFYIGYIVTH
IPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSDWLIVTRVLMG
LGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFID
AYGWEFVFYFFGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIGT
ISRNEDLPPTPWKAILTNLPMFALVAAQIGHDWGFYIMVTDLPKYMADVL
QFSIKANGLYSSLPYVMMWIVSVGSGFVADWMIRRGVLSTTNTRKVMTGL
AAFGPAIFMVGASYAGCDRVLVVVLFTICMGLMGAYYAGMKLSPLDMSPN
YAGTLMAITNGIGAITGVITPYLVGVMTPNASLLEWRLVFWVAFGVLCFT
AVIYCIWASGEVQPFNNAPIQPRSVDFEAQERKVGGEKTSGLEQSSASFL
DH
BO15494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmGlut-PA | 496 | CG5304-PA | 1..496 | 1..496 | 2597 | 100 | Plus |
CG9254-PA | 481 | CG9254-PA | 6..470 | 3..467 | 1793 | 71.3 | Plus |
Picot-PD | 516 | CG8098-PD | 17..482 | 3..467 | 903 | 39.7 | Plus |
Picot-PC | 516 | CG8098-PC | 17..482 | 3..467 | 903 | 39.7 | Plus |
Picot-PA | 516 | CG8098-PA | 17..482 | 3..467 | 903 | 39.7 | Plus |