Clone BO15494 Report

Search the DGRC for BO15494

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)01810-RA
Protein status:BO15494.pep: validated full length
Sequenced Size:1522

Clone Sequence Records

BO15494.3prime Sequence

924 bp (706 high quality bases) assembled on 2006-05-30

> BO15494.3prime
ATGGTCTAGAAAGCTTGCCGAGCTCTGCTCCAGACCACTTGTCTTTTCAC
CACCCACCTTGCGCTCCTGTGCCTCAAAGTCGACGGAGCGCGGCTGGATG
GGTGCGTTATTGAACGGCTGCACCTCTCCGGATGCCCAAATGCAGTAGAT
CACGGCAGTGAAGCAGAGCACGCCAAAGGCCACCCAGAACACAAGACGCC
ACTCCAGCAGCGAGGCATTTGGTGTCATCACGCCCACCAGGTACGGCGTG
ATCACTCCGGTGATTGCTCCAATTCCGTTTGTGATGGCCATGAGCGTTCC
GGCATAGTTCGGACTCATGTCCAGGGGACTCAGCTTCATGCCCGCATAGT
AGGCGCCCATCAGACCCATGCAGATGGTGAAGAGCACCACGACGAGGACA
CGATCGCAGCCGGCGTAGGAGGCGCCCACCATGAAGATGGCCGGACCGAA
GGCAGCCAGACCAGTCATCACCTTTCGGGTGTTTGTGGTGCTCAACACGC
CACGGCGGATCATCCAATCGGCCACAAAGCCACTGCCCACGGAAACGATC
CACATCATGACGTAGGGCAGCGAGGAGTAAAGACCGTTGGCCTTGATCGA
GAACTGAAGAACGTCGGCCATGTACTTCGGCAGATCCGTCACCATGATGT
AGAAGCCCCAATCGTGACCAATCTGGGCGGCCACCAGGGCAAACATGGGC
AGGTTGGTGAGGATGGCCTTCCAGGGAGTGGGGGGCAGGTCCTCGTTGCG
GCTAATGGTTCCAATCTCCTTGACCAGATACTCGCGCTCGCTGGGCTTGA
TGAAGGGATGCGACGTGGGATCGCTGTAACAAAGGAACATAAAGATGGCA
AACCAGACAACACCCAAACCCCCGAAGAAGTAAAAAACAAACTCCCAACC
ATAGGCGTCTATAAACCCGCCAAA

BO15494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5304-PA 1491 l(2)01810-RA 585..1488 922..19 4370 99.3 Minus
CG9254-PA 1446 CG9254-RA 1146..1184 370..332 145 94.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
dmGlut-RA 2426 CG5304-RA 929..1832 922..19 4430 99.3 Minus
CG9254-RA 1684 CG9254-RA 1039..1596 666..109 690 75.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12032646..12033270 840..216 3095 99.7 Minus
2L 23513712 2L 12033331..12033528 216..19 990 100 Minus
2L 23513712 2L 13595591..13596148 109..666 690 74.9 Plus
2L 23513712 2L 12032496..12032577 922..841 350 95.1 Minus
Blast to na_te.dros performed on 2015-02-12 04:19:32 has no hits.

BO15494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:25 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5304-PA 586..1491 15..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:58 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5304-PA 586..1491 15..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:03 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 930..1836 14..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:43 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 930..1836 14..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:43 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12032497..12032577 841..921 95 -> Minus
2L 12032646..12033269 217..840 99 -> Minus
2L 12033331..12033532 14..216 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:03 Download gff for BO15494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12032497..12032577 841..921 95 -> Minus
arm_2L 12032646..12033269 217..840 99 -> Minus
arm_2L 12033331..12033532 14..216 99   Minus

BO15494.5prime Sequence

851 bp (802 high quality bases) assembled on 2006-05-29

> BO15494.5prime
GAAGTTATCAGTCGACATGACGCAACAGCCACAATGGGGCATAAGCCTAT
CGAGGTATTTCGTGATACCCCAGCGAGTGATCCTGGCCATCATGGGCTTC
TTGGCCATCCTGAATGCCTACACGATGCGCGTCTGTCTATCACAGGCCAT
CACGGTGCTGGTGGTCAAGAAGAACTCAACGGATGACGATTCTGAGGCGA
TCTGCGAACCCGATGACATCGACGAGGGAACCAGTGTTGGTGGCGATTTC
GAATGGTCCGAGGAGCTGCAAGGTTTGATCCTGTCCTCATTCTACATCGG
TTACATTGTCACCCACATTCCCGGCGGTCTGCTGGCCGAGAAGTTCGGTG
GCAAATGGACCCTGGGCCTTGGCATTCTGTCCACCGCCGTGTTCACCATG
CTAACGCCTTTGGCCATTAACAAGGGTGACTCCGACTGGCTGATTGTGAC
CCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTG
TCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCT
CTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTC
TGGCGTGTTTATAGACGCCTATGGTTGGGAGTTTGTCTTCTACTTCTTCG
GGGGTCTGGGTGTTGTCTGGTTTGCCATCTTTATGTTCCTCTGCTACAGC
GATCCCACGTCGCATCCCTTCATCAAGCCCAGCGAGCGCGAGTATCTGGT
CAAGGAGATTGGAACCATTAGCCGCAACGAGGACCTGCCCCCCACTCCCT
GGAAGGCCATCCTCACCAACCTGCCCATGTTTGCCCTGGTGGCCGCCCAG
A

BO15494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5304-PA 1491 l(2)01810-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
dmGlut-RA 2426 CG5304-RA 341..1179 13..851 4180 99.9 Plus
CG9254-RA 1684 CG9254-RA 211..356 29..174 280 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12032131..12032577 236..682 2235 100 Plus
2L 23513712 2L 12031893..12032073 57..237 905 100 Plus
2L 23513712 2L 12032646..12032814 683..851 845 100 Plus
2L 23513712 2L 13596831..13596976 174..29 280 79.5 Minus
2L 23513712 2L 12027778..12027821 13..56 205 97.7 Plus
Blast to na_te.dros performed 2015-02-04 02:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 1827..1877 373..422 108 70.6 Plus

BO15494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:26 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5304-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:52:59 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5304-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:38 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 333..1178 7..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:59 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 333..1178 7..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:59 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12027770..12027821 7..56 92 -> Plus
2L 12031893..12032071 57..235 100 -> Plus
2L 12032131..12032577 236..682 100 -> Plus
2L 12032646..12032813 683..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:38 Download gff for BO15494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12027770..12027821 7..56 92 -> Plus
arm_2L 12031893..12032071 57..235 100 -> Plus
arm_2L 12032131..12032577 236..682 100 -> Plus
arm_2L 12032646..12032813 683..850 100   Plus

BO15494.complete Sequence

1522 bp (1522 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633495

> BO15494.complete
GAAGTTATCAGTCGACATGACGCAACAGCCACAATGGGGCATAAGCCTAT
CGAGGTATTTCGTGATACCCCAGCGAGTGATCCTGGCCATCATGGGCTTC
TTGGCCATCCTGAATGCCTACACGATGCGCGTCTGTCTATCACAGGCCAT
CACGGTGCTGGTGGTCAAGAAGAACTCAACGGATGACGATTCTGAGGCGA
TCTGCGAACCCGATGACATCGACGAGGGAACCAGTGTTGGTGGCGATTTC
GAATGGTCCGAGGAGCTGCAAGGTTTGATCCTGTCCTCATTCTACATCGG
TTACATTGTCACCCACATTCCCGGCGGTCTGCTGGCCGAGAAGTTCGGTG
GCAAATGGACCCTGGGCCTTGGCATTCTGTCCACCGCCGTGTTCACCATG
CTAACGCCTTTGGCCATTAACAAGGGTGACTCCGACTGGCTGATTGTGAC
CCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTG
TCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCT
CTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTC
TGGCGTGTTTATAGACGCCTATGGTTGGGAGTTTGTCTTCTACTTCTTCG
GGGGTCTGGGTGTTGTCTGGTTTGCCATCTTTATGTTCCTCTGCTACAGC
GATCCCACGTCGCATCCCTTCATCAAGCCCAGCGAGCGCGAGTATCTGGT
CAAGGAGATTGGAACCATTAGCCGCAACGAGGACCTGCCCCCCACTCCCT
GGAAGGCCATCCTCACCAACCTGCCCATGTTTGCCCTGGTGGCCGCCCAG
ATTGGTCACGATTGGGGCTTCTACATCATGGTGACGGATCTGCCGAAGTA
CATGGCCGACGTTCTTCAGTTCTCGATCAAGGCCAACGGTCTTTACTCCT
CGCTGCCCTACGTCATGATGTGGATCGTTTCCGTGGGCAGTGGCTTTGTG
GCCGATTGGATGATCCGCCGTGGCGTGTTGAGCACCACAAACACCCGAAA
GGTGATGACTGGTCTGGCTGCCTTCGGTCCGGCCATCTTCATGGTGGGCG
CCTCCTACGCCGGCTGCGATCGTGTCCTCGTCGTGGTGCTCTTCACCATC
TGCATGGGTCTGATGGGCGCCTACTATGCGGGCATGAAGCTGAGTCCCCT
GGACATGAGTCCGAACTATGCCGGAACGCTCATGGCCATCACAAACGGAA
TTGGAGCAATCACCGGAGTGATCACGCCGTACCTGGTGGGCGTGATGACA
CCAAATGCCTCGCTGCTGGAGTGGCGTCTTGTGTTCTGGGTGGCCTTTGG
CGTGCTCTGCTTCACTGCCGTGATCTACTGCATTTGGGCATCCGGAGAGG
TGCAGCCGTTCAATAACGCACCCATCCAGCCGCGCTCCGTCGACTTTGAG
GCACAGGAGCGCAAGGTGGGTGGTGAAAAGACAAGTGGTCTGGAGCAGAG
CTCGGCAAGCTTTCTAGACCAT

BO15494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
dmGlut-RA 1491 CG5304-PA 1..1488 17..1504 7440 100 Plus
CG9254-RA 1446 CG9254-PA 850..1407 857..1414 690 74.9 Plus
CG9254-RA 1446 CG9254-PA 22..167 29..174 280 79.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
dmGlut-RA 2426 CG5304-RA 341..1832 13..1504 7445 99.9 Plus
CG9254-RA 1684 CG9254-RA 1039..1596 857..1414 690 74.9 Plus
CG9254-RA 1684 CG9254-RA 211..356 29..174 280 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12032646..12033270 683..1307 3125 100 Plus
2L 23513712 2L 12032131..12032577 236..682 2235 100 Plus
2L 23513712 2L 12033331..12033528 1307..1504 990 100 Plus
2L 23513712 2L 12031893..12032073 57..237 905 100 Plus
2L 23513712 2L 13595591..13596148 1414..857 690 74.9 Minus
2L 23513712 2L 13596831..13596976 174..29 280 79.5 Minus
2L 23513712 2L 12027778..12027821 13..56 205 97.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:52 has no hits.

BO15494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:28 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)01810-RA 1..1491 17..1508 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:34 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)01810-RA 331..1834 7..1509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:30 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 345..1832 17..1506 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:28 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)01810-RA 331..1834 7..1509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:05 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
dmGlut-RA 345..1832 17..1506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:05 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12027782..12027821 17..56 100 -> Plus
2L 12031893..12032071 57..235 100 -> Plus
2L 12032131..12032577 236..682 100 -> Plus
2L 12032646..12033269 683..1306 100 -> Plus
2L 12033331..12033528 1307..1506 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:30 Download gff for BO15494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12027782..12027821 17..56 100 -> Plus
arm_2L 12031893..12032071 57..235 100 -> Plus
arm_2L 12032131..12032577 236..682 100 -> Plus
arm_2L 12032646..12033269 683..1306 100 -> Plus
arm_2L 12033331..12033528 1307..1506 99   Plus

BO15494.pep Sequence

Translation from 16 to 1522

> BO15494.pep
MTQQPQWGISLSRYFVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVV
KKNSTDDDSEAICEPDDIDEGTSVGGDFEWSEELQGLILSSFYIGYIVTH
IPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSDWLIVTRVLMG
LGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFID
AYGWEFVFYFFGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIGT
ISRNEDLPPTPWKAILTNLPMFALVAAQIGHDWGFYIMVTDLPKYMADVL
QFSIKANGLYSSLPYVMMWIVSVGSGFVADWMIRRGVLSTTNTRKVMTGL
AAFGPAIFMVGASYAGCDRVLVVVLFTICMGLMGAYYAGMKLSPLDMSPN
YAGTLMAITNGIGAITGVITPYLVGVMTPNASLLEWRLVFWVAFGVLCFT
AVIYCIWASGEVQPFNNAPIQPRSVDFEAQERKVGGEKTSGLEQSSASFL
DH

BO15494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
dmGlut-PA 496 CG5304-PA 1..496 1..496 2597 100 Plus
CG9254-PA 481 CG9254-PA 6..470 3..467 1793 71.3 Plus
Picot-PD 516 CG8098-PD 17..482 3..467 903 39.7 Plus
Picot-PC 516 CG8098-PC 17..482 3..467 903 39.7 Plus
Picot-PA 516 CG8098-PA 17..482 3..467 903 39.7 Plus