Clone Sequence Records
BO15495.3prime Sequence
848 bp (738 high quality bases) assembled on 2006-05-30
> BO15495.3prime
ATGGTCTAGAAAGCTTGCTTTTTTCTTGTTTTTATTGTTAGCTCCGCGTG
GCGGTGTCAAAGGACGTCCTGAGCTGCCAAAGTTGGGATAAACAAATCGT
CGCTTGTCGGCGGGTTTCAATATCTGGAAGGAGCACATCAATGTGTCGTC
CACGGACATCATGGCACCCGCGTTGTCGAATTCCCCGCAGTAGTTGGGCG
CCGAGAAGAGCGTCACCAGCTGACGTTTGGCGAAGAACTCATAACCGTCC
TCCACTACCTGATGAGCCCGACAGATCAGGTCAAATTCGTGCTTCTGTAA
AAATTTACCCACAACCTCTGCTCCAAATGTGAAGCTCACGCCGCGATCAT
TCTCGCCCCAGCCCATGGTATCCTTATCCGGATCCGACCACAGCAGATCG
CACAGCAGTCCCTGATCGGGCACGTCTGTGGGACGCATGATGCGTCGTAT
CTGCTCCATGGACGACAGATCTGGACTCAGGCCACCGTGGCAGCAGAAGA
TCTTCTCATCCACGATGGCGGCCACCGGCAGGCAGTTGAAGCAGTCCGTG
AAAGTTTTCCACAGCTTGATGGTGTAGCGACGTTTACATTCGTCATAGAA
CCCGTAGATGCGATTGATGCTGGCGCACTCATGGTTGCCGCGCAGCAAGA
AGAAGTTCTCCGCGTACTTGATCTTGTAGGCCAGCAACAGGCATATCGTC
TCCAGGGATTGCTTGCCGCGATCGACATAGTCGCCCAGGAACAGGTAGTT
TGACTCCGGCGGAAAGCCGCCCAATTCGAACAGGGCCAAGAAGTCATAAT
ATTGTCCGTGTATGTCCCCGCAAATCTTCCGCGGTGCCTTCCACTCCA
BO15495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6593-PA | 984 | Pp1alpha-96A-RA | 161..981 | 839..19 | 3855 | 98.7 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 229..518 | 771..482 | 700 | 89.6 | Minus |
| CG2096-PB | 993 | flw-RB | 253..383 | 750..620 | 305 | 89.3 | Minus |
| CG2096-PA | 1386 | flw-RA | 646..776 | 750..620 | 305 | 89.3 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 538..671 | 462..329 | 295 | 88.8 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 793..875 | 207..125 | 190 | 89.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 283..383 | 717..617 | 180 | 87.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 802..852 | 198..148 | 155 | 92.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 541..650 | 459..350 | 150 | 85.4 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 481..533 | 519..467 | 140 | 90.5 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 427..473 | 573..527 | 135 | 91.4 | Minus |
| CG2096-PB | 993 | flw-RB | 643..674 | 360..329 | 135 | 96.8 | Minus |
| CG2096-PA | 1386 | flw-RA | 1036..1067 | 360..329 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 550..1370 | 839..19 | 3955 | 98.8 | Minus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 550..1370 | 839..19 | 3955 | 98.8 | Minus |
| Pp1-87B-RA | 2203 | CG5650-RA | 390..1128 | 839..101 | 2000 | 84.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424790..12425528 | 101..839 | 2000 | 84.7 | Plus |
| X | 23542271 | X | 15359439..15360177 | 101..839 | 1520 | 80.4 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 602..314 | 1445 | 100 | Minus |
| 3R | 32079331 | 3R | 24518955..24519194 | 839..600 | 1050 | 95.8 | Minus |
| 3R | 32079331 | 3R | 24519938..24520089 | 317..166 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 24520342..24520491 | 168..19 | 750 | 100 | Minus |
| X | 23542271 | X | 10406764..10407035 | 600..329 | 535 | 79.8 | Minus |
| X | 23542271 | X | 10406464..10406701 | 839..602 | 515 | 81.1 | Minus |
| 2R | 25286936 | 2R | 21881560..21882040 | 156..636 | 425 | 72.6 | Plus |
| X | 23542271 | X | 10407156..10407300 | 268..124 | 305 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:30:29 has no hits.
BO15495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:27 Download gff for
BO15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 153..960 | 40..847 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:01 Download gff for
BO15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 153..960 | 40..847 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:01 Download gff for
BO15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 542..1349 | 40..847 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:15 Download gff for
BO15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 542..1349 | 40..847 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-01-30 20:12:15 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-06 18:59:01 has no hits.
BO15495.5prime Sequence
870 bp (743 high quality bases) assembled on 2006-05-29
> BO15495.5prime
GAAGTTATCAGTCGACATGTCGGATATCATGAACATCGACAGTATCATCT
CGCGCCTGCTGGAGGTGCGCGGTGCACGACCGGGAAAGAATGTTCAGCTA
TCAGAGAGCGAGATCCGCAGCCTGTGCCTCAAGTCCCGCGAGATATTCCT
GTCGCAGCCCATACTCCTGGAGCTGGAGGCACCGCTGAAGATCTGCGGCG
ACATACACGGACAATATTATGACCTCTTGCGCCTGTTCGAATACGGCGGC
TTTCCGCCCGAGTCAAACTACCTGTTCCTGGGCGACTATGTCGATCGCGG
CAAGCAATCCCTGGAGACGATATGCCTGCTGCTGGCCTACAAGATCAAGT
ACGCGGAGAACTTCTTCTTGCTGCGCGGCAACCATGAGTGCGCCAGCATC
AATCGCATCTACGGGTTCTATGACGAATGTAAACGTCGCTACACCATCAA
GCTGTGGAAAACTTTCACGGACTGCTTCAACTGCCTGCCGGTGGCCGCCA
TCGTGGATGAGAAGATCTTCTGCTGCCACGGTGGCCTGAGTCCAGATCTG
TCGTCCATGGAGCAGATACGACGCATCATGCGTCCCACAGACGTGCCCGA
TCAGGGACTGCTGTGCGATCTGCTGTGGTCGGATCCGGATAAGGATACCA
TGGGCTGGGGCGAGAATGATCGCGGCGTGAGCTTCACATTTGGAGCAGAG
GTTGTGGGTAAATTTTTACAGAAGCACGAATTTGACCTGATCTGTCGGGC
TCATCAGGTAGTGGAGGACGGTTATGAGTTCTTCGCCAAACGTCAGCTGG
TGACGCTCTTTCTCGCGCCCAACTACTGCGGGGAATTCAACAACGCGGGT
GCCATGAAGTCCGTGGAACG
BO15495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6593-PA | 984 | Pp1alpha-96A-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 211..518 | 227..534 | 740 | 89.6 | Plus |
| CG2096-PB | 993 | flw-RB | 253..383 | 266..396 | 330 | 90 | Plus |
| CG2096-PA | 1386 | flw-RA | 646..776 | 266..396 | 330 | 90 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 538..671 | 554..687 | 295 | 88.8 | Plus |
| CG6593-PA | 984 | Pp1alpha-96A-RA | 799..851 | 815..867 | 215 | 96.2 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 283..383 | 299..399 | 205 | 88.1 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 115..188 | 131..204 | 195 | 90.5 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 541..650 | 557..666 | 150 | 85.4 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 481..533 | 497..549 | 140 | 90.5 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 139..185 | 155..201 | 135 | 91.4 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 427..473 | 443..489 | 135 | 91.4 | Plus |
| CG2096-PB | 993 | flw-RB | 643..674 | 656..687 | 135 | 96.8 | Plus |
| CG2096-PA | 1386 | flw-RA | 1036..1067 | 656..687 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1240 | 17..867 | 4180 | 99.5 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1240 | 17..867 | 4180 | 99.5 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..1080 | 29..867 | 2245 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424838..12425676 | 867..29 | 2230 | 84.4 | Minus |
| X | 23542271 | X | 15359487..15360298 | 867..56 | 1810 | 81.5 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 65..416 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 414..702 | 1445 | 100 | Plus |
| X | 23542271 | X | 10406407..10406701 | 120..414 | 755 | 83.7 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 699..850 | 685 | 96.7 | Plus |
| X | 23542271 | X | 10406764..10407035 | 416..687 | 535 | 79.8 | Plus |
| 2R | 25286936 | 2R | 17955967..17956265 | 544..246 | 370 | 74.9 | Minus |
| 3R | 32079331 | 3R | 24518659..24518707 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:30:43 has no hits.
BO15495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:28 Download gff for
BO15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:02 Download gff for
BO15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:19 Download gff for
BO15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1242 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:23 Download gff for
BO15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1242 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 14:11:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-30 05:10:19 has no hits.
BO15495.complete Sequence
1015 bp (1015 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633496
> BO15495.complete
GAAGTTATCAGTCGACATGTCGGATATCATGAACATCGACAGTATCATCT
CGCGCCTGCTGGAGGTGCGCGGTGCACGACCGGGAAAGAATGTTCAGCTA
TCAGAGAGCGAGATCCGCAGCCTGTGCCTCAAGTCCCGCGAGATATTCCT
GTCGCAGCCCATACTCCTGGAGCTGGAGGCACCGCTGAAGATCTGCGGCG
ACATACACGGACAATATTATGACCTCTTGCGCCTGTTCGAATACGGCGGC
TTTCCGCCCGAGTCAAACTACCTGTTCCTGGGCGACTATGTCGATCGCGG
CAAGCAATCCCTGGAGACGATATGCCTGCTGCTGGCCTACAAGATCAAGT
ACGCGGAGAACTTCTTCTTGCTGCGCGGCAACCATGAGTGCGCCAGCATC
AATCGCATCTACGGGTTCTATGACGAATGTAAACGTCGCTACACCATCAA
GCTGTGGAAAACTTTCACGGACTGCTTCAACTGCCTGCCGGTGGCCGCCA
TCGTGGATGAGAAGATCTTCTGCTGCCACGGTGGCCTGAGTCCAGATCTG
TCGTCCATGGAGCAGATACGACGCATCATGCGTCCCACAGACGTGCCCGA
TCAGGGACTGCTGTGCGATCTGCTGTGGTCGGATCCGGATAAGGATACCA
TGGGCTGGGGCGAGAATGATCGCGGCGTGAGCTTCACATTTGGAGCAGAG
GTTGTGGGTAAATTTTTACAGAAGCACGAATTTGACCTGATCTGTCGGGC
TCATCAGGTAGTGGAGGACGGTTATGAGTTCTTCGCCAAACGTCAGCTGG
TGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAATTCGACAACGCGGGT
GCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGAA
ACCCGCCGACAAGCGACGATTTGTTTATCCCAACTTTGGCAGCTCAGGAC
GTCCTTTGACACCGCCACGCGGAGCTAACAATAAAAACAAGAAAAAAGCA
AGCTTTCTAGACCAT
BO15495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 984 | CG6593-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
| Pp1alpha-96A-RA | 984 | CG6593-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
| Pp1-87B-RA | 909 | CG5650-PA | 13..899 | 29..915 | 2410 | 84.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1370 | 17..997 | 4905 | 100 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1370 | 17..997 | 4905 | 100 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..1128 | 29..915 | 2410 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424790..12425676 | 915..29 | 2410 | 84.8 | Minus |
| X | 23542271 | X | 15359439..15360298 | 915..56 | 1915 | 81.5 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 65..416 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 414..702 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 699..850 | 760 | 100 | Plus |
| X | 23542271 | X | 10406407..10406701 | 120..414 | 755 | 83.7 | Plus |
| 3R | 32079331 | 3R | 24520342..24520491 | 848..997 | 750 | 100 | Plus |
| X | 23542271 | X | 10406764..10407035 | 416..687 | 535 | 79.8 | Plus |
| Y | 3667352 | Y | 3539716..3540455 | 889..150 | 430 | 70.5 | Minus |
| 2R | 25286936 | 2R | 21881560..21882040 | 860..380 | 425 | 72.6 | Minus |
| 2R | 25286936 | 2R | 17955967..17956265 | 544..246 | 370 | 74.9 | Minus |
| X | 23542271 | X | 10407156..10407300 | 748..892 | 305 | 80.7 | Plus |
| 3R | 32079331 | 3R | 24518659..24518707 | 17..65 | 245 | 100 | Plus |
| Y | 3667352 | Y | 10568..10706 | 731..869 | 185 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:15:52 has no hits.
BO15495.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:29 Download gff for
BO15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:36 Download gff for
BO15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1362 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:58 Download gff for
BO15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1349 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:29 Download gff for
BO15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1362 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:15 Download gff for
BO15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1349 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 11:17:15 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 08:16:58 has no hits.
BO15495.pep Sequence
Translation from 16 to 1015
> BO15495.pep
MSDIMNIDSIISRLLEVRGARPGKNVQLSESEIRSLCLKSREIFLSQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE
TICLLLAYKIKYAENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF
TDCFNCLPVAAIVDEKIFCCHGGLSPDLSSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTMGWGENDRGVSFTFGAEVVGKFLQKHEFDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR
RFVYPNFGSSGRPLTPPRGANNKNKKKASFLDH
BO15495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-PB | 327 | CG6593-PB | 1..327 | 1..327 | 1754 | 100 | Plus |
| Pp1alpha-96A-PA | 327 | CG6593-PA | 1..327 | 1..327 | 1754 | 100 | Plus |
| Pp1-87B-PA | 302 | CG5650-PA | 1..301 | 1..301 | 1573 | 96.7 | Plus |
| Pp1-13C-PA | 302 | CG9156-PA | 1..301 | 1..301 | 1522 | 92.4 | Plus |
| flw-PC | 330 | CG2096-PC | 6..330 | 5..327 | 1451 | 82.2 | Plus |
