Clone Sequence Records
BO15505.3prime Sequence
782 bp (694 high quality bases) assembled on 2006-05-30
> BO15505.3prime
ATGGTCTAGAAAGCTTGCAAAATCGTTTTTTACTAAGTTTGCTCGCTCCC
GCAATGCTAGTTCCTGGTTCTGCTTGGCAATCATTCGCTCGCCCTTCGAC
TTCTTGCCTATGCCCAGCTTCGGCAATCCTCTATTTAGACCCTCGAGAAG
GACGCACGCCTTGCACGGCTGCTGTGAGGAAACGAAGCCACATCGGGTGC
ATGTGCCACGCTCGGGCTTCTTTACCGTGTCCTTGAAGCGAAGCTGTTCG
CCAGAGTAGATGATGTCCATTATAACCGATGGTCGCACTTTCTCCAAATC
CTTGAGAAACGCTCGAGCGTGGCCGCGATACGCATTGGGGGCGAATACGC
ACTCCGTTGAGAAGTAGACCAGCTTTTTGTAGTGGGCGTACATCACGATT
TCTTTCTCGTAGCTGTACTTGAGGGGCTTCACTCGGGGAATGGTATCCTC
GCCCCCGCCGGTGCGGATGCTCGTGCAGCGTCGCAGGCGCGCCGTGTCCC
CACGGAGCACGTTCATCAAGACAGTCTCCGCAATGTCATCTGCATTGTGG
CCTGTGGCTATGCTATCAACGCCCAACAGCTTGGCCCCTCTATCCAAGGC
CTGTCGGCGGAAGACGCCGCAAAATGTGCAGTTGTTAGAACGGCCGATCT
GGGCAACAATGCGGTCCATGGTCCAGCCGTAGAGCTCCTCGTAGGACAGG
ATCTTTAGTGGCATCTGGTAGTCGTCACGGTTCTGTTTCACTGTCTCCAA
ACTGTCATCCCGATATCAAGTGATGCCTTCGT
BO15505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 1032 | CG8078-RA | 266..1029 | 782..19 | 3795 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 341..1104 | 782..19 | 3805 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097314..9098077 | 19..782 | 3805 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:32 has no hits.
BO15505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:38 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 266..1032 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:15 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 266..1032 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:41:11 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 341..1108 | 14..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:46 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 341..1108 | 14..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:46 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9097310..9098077 | 14..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:41:11 Download gff for
BO15505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4984815..4985582 | 14..782 | 99 | | Plus |
BO15505.5prime Sequence
812 bp (759 high quality bases) assembled on 2006-05-30
> BO15505.5prime
GAAGTTATCAGTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTG
BO15505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 1032 | CG8078-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 76..871 | 17..812 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097547..9098136 | 812..223 | 2950 | 100 | Minus |
2R | 25286936 | 2R | 9098189..9098349 | 222..62 | 805 | 100 | Minus |
2R | 25286936 | 2R | 9098403..9098450 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:34:37 has no hits.
BO15505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:39 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:16 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:01 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 62..871 | 2..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:49 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 62..871 | 2..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:49 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9097547..9098136 | 223..812 | 100 | <- | Minus |
2R | 9098189..9098346 | 65..222 | 100 | <- | Minus |
2R | 9098403..9098464 | 2..64 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:01 Download gff for
BO15505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4985052..4985641 | 223..812 | 100 | <- | Minus |
arm_2R | 4985694..4985851 | 65..222 | 100 | <- | Minus |
arm_2R | 4985908..4985969 | 2..64 | 92 | | Minus |
BO15505.complete Sequence
1063 bp (1063 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633497
> BO15505.complete
GAAGTTATCAGTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCGTGGCACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGTG
CAAGGCGTGCGTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAAGCTGG
GCATAGGCAAGAAGTCGAAGGGCGAGCGAATGATTGCCAAGCAGAACCAG
GAACTAGCATTGCGGGAGCGAGCAAACTTAGTAAAAAACGATTTTGCAAG
CTTTCTAGACCAT
BO15505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1032 | CG8078-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 76..1104 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097314..9098136 | 1045..223 | 4115 | 100 | Minus |
2R | 25286936 | 2R | 9098189..9098349 | 222..62 | 805 | 100 | Minus |
2R | 25286936 | 2R | 9098403..9098450 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:14 has no hits.
BO15505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:30 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 1..1032 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:38 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 4..1050 | 2..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:00 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 76..1104 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:30 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 4..1050 | 2..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:44 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 76..1104 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:44 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9097312..9098136 | 223..1047 | 99 | <- | Minus |
2R | 9098189..9098346 | 65..222 | 100 | <- | Minus |
2R | 9098403..9098450 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:00 Download gff for
BO15505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4985694..4985851 | 65..222 | 100 | <- | Minus |
arm_2R | 4985908..4985955 | 17..64 | 100 | | Minus |
arm_2R | 4984817..4985641 | 223..1047 | 99 | <- | Minus |
BO15505.pep Sequence
Translation from 16 to 1063
> BO15505.pep
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDFASFLDH
BO15505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 343 | CG8078-PA | 1..343 | 1..343 | 1787 | 100 | Plus |