Clone BO15505 Report

Search the DGRC for BO15505

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG8078-RA
Protein status:BO15505.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO15505.3prime Sequence

782 bp (694 high quality bases) assembled on 2006-05-30

> BO15505.3prime
ATGGTCTAGAAAGCTTGCAAAATCGTTTTTTACTAAGTTTGCTCGCTCCC
GCAATGCTAGTTCCTGGTTCTGCTTGGCAATCATTCGCTCGCCCTTCGAC
TTCTTGCCTATGCCCAGCTTCGGCAATCCTCTATTTAGACCCTCGAGAAG
GACGCACGCCTTGCACGGCTGCTGTGAGGAAACGAAGCCACATCGGGTGC
ATGTGCCACGCTCGGGCTTCTTTACCGTGTCCTTGAAGCGAAGCTGTTCG
CCAGAGTAGATGATGTCCATTATAACCGATGGTCGCACTTTCTCCAAATC
CTTGAGAAACGCTCGAGCGTGGCCGCGATACGCATTGGGGGCGAATACGC
ACTCCGTTGAGAAGTAGACCAGCTTTTTGTAGTGGGCGTACATCACGATT
TCTTTCTCGTAGCTGTACTTGAGGGGCTTCACTCGGGGAATGGTATCCTC
GCCCCCGCCGGTGCGGATGCTCGTGCAGCGTCGCAGGCGCGCCGTGTCCC
CACGGAGCACGTTCATCAAGACAGTCTCCGCAATGTCATCTGCATTGTGG
CCTGTGGCTATGCTATCAACGCCCAACAGCTTGGCCCCTCTATCCAAGGC
CTGTCGGCGGAAGACGCCGCAAAATGTGCAGTTGTTAGAACGGCCGATCT
GGGCAACAATGCGGTCCATGGTCCAGCCGTAGAGCTCCTCGTAGGACAGG
ATCTTTAGTGGCATCTGGTAGTCGTCACGGTTCTGTTTCACTGTCTCCAA
ACTGTCATCCCGATATCAAGTGATGCCTTCGT

BO15505.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 1032 CG8078-RA 266..1029 782..19 3795 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 341..1104 782..19 3805 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097314..9098077 19..782 3805 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:32 has no hits.

BO15505.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:38 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 266..1032 15..782 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:15 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 266..1032 15..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:41:11 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 341..1108 14..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:46 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 341..1108 14..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:46 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9097310..9098077 14..782 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:41:11 Download gff for BO15505.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4984815..4985582 14..782 99   Plus

BO15505.5prime Sequence

812 bp (759 high quality bases) assembled on 2006-05-30

> BO15505.5prime
GAAGTTATCAGTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTG

BO15505.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 1032 CG8078-RA 1..796 17..812 3980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 76..871 17..812 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097547..9098136 812..223 2950 100 Minus
2R 25286936 2R 9098189..9098349 222..62 805 100 Minus
2R 25286936 2R 9098403..9098450 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:34:37 has no hits.

BO15505.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:39 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:16 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:01 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 62..871 2..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:49 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 62..871 2..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:49 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9097547..9098136 223..812 100 <- Minus
2R 9098189..9098346 65..222 100 <- Minus
2R 9098403..9098464 2..64 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:01 Download gff for BO15505.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4985052..4985641 223..812 100 <- Minus
arm_2R 4985694..4985851 65..222 100 <- Minus
arm_2R 4985908..4985969 2..64 92   Minus

BO15505.complete Sequence

1063 bp (1063 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633497

> BO15505.complete
GAAGTTATCAGTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCGTGGCACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGTG
CAAGGCGTGCGTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAAGCTGG
GCATAGGCAAGAAGTCGAAGGGCGAGCGAATGATTGCCAAGCAGAACCAG
GAACTAGCATTGCGGGAGCGAGCAAACTTAGTAAAAAACGATTTTGCAAG
CTTTCTAGACCAT

BO15505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1032 CG8078-PA 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 76..1104 17..1045 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097314..9098136 1045..223 4115 100 Minus
2R 25286936 2R 9098189..9098349 222..62 805 100 Minus
2R 25286936 2R 9098403..9098450 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:02:14 has no hits.

BO15505.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:30 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:38 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 4..1050 2..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:00 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 76..1104 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:30 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 4..1050 2..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:44 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 76..1104 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:44 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9097312..9098136 223..1047 99 <- Minus
2R 9098189..9098346 65..222 100 <- Minus
2R 9098403..9098450 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:00 Download gff for BO15505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4985694..4985851 65..222 100 <- Minus
arm_2R 4985908..4985955 17..64 100   Minus
arm_2R 4984817..4985641 223..1047 99 <- Minus

BO15505.pep Sequence

Translation from 16 to 1063

> BO15505.pep
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDFASFLDH

BO15505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 343 CG8078-PA 1..343 1..343 1787 100 Plus