Clone Sequence Records
BO15506.3prime Sequence
701 bp (699 high quality bases) assembled on 2006-05-30
> BO15506.3prime
ATGGTCTAGAAAGCTTGCATCTTGTATCAGCACCCAGAAGCCCGTGGCGT
CATCCCGCCGGAAGTAGCGCGGCCGATTGTCCCTGAAAACGGTGACGGCG
GGGAACTGATTCTCCTGTATAAACCTAATGGTGGCACGCGTCTGAGGCGC
AAAGTGAGGCGGCTCCACGTCTGGACTGGAGGACAGGTGCTGCAACAGAA
ACTCATCCGTTTGTGATAGCCACAGATCAGCGCCGCGCAAAGGATCGTAG
TTAAAGGGTCCAATGCGTAGCATGCCCAGCGAGGAGTCGTATATATCCAG
AACCGACTGCGCGCCCATGAAGATGCGAGCATCGCGTAGCTCCCGGTCGG
GTCCTCGGTCTGGAAAGGAGGCCGGAAAGATCTCACCAGTCTTGATGTTC
ACGCCCACTCCATAGATGATGGGGCAGTTGATCTCGCCGCGCATCATGGT
ATTTAGCTCGCCCACGCAAGCCTGCGTCAGATCGATTTCAAGTAGGTGAT
TGTGGAATGATTGCATAATGCTGAAGAATACGTCCTCGCCGTATCCCTTG
GCATCGCGATAGCCACCAATCAACTGCAACTCGATGCGACCCTCCGGATA
GCCGACGGCCAGCTCCTGAACCCGCGACACCATGGTGCACACAGCCTCGT
CCACGCCGCTGCCATCGAAGTGCGCCAGGGCCACAGCACCAGATCCGGAG
T
BO15506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5473-PA | 933 | SP2637-RA | 248..930 | 701..19 | 3415 | 100 | Minus |
CG5473-PB | 933 | SP2637-RB | 248..930 | 701..19 | 3415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SP2637-RB | 1450 | CG5473-RB | 606..1288 | 701..19 | 3415 | 100 | Minus |
SP2637-RA | 1340 | CG5473-RA | 496..1178 | 701..19 | 3415 | 100 | Minus |
SP2637-RD | 1876 | CG5473-RD | 606..1279 | 701..28 | 3370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18641857..18642067 | 302..512 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 18642132..18642315 | 513..696 | 920 | 100 | Plus |
2R | 25286936 | 2R | 18641635..18641797 | 142..304 | 815 | 100 | Plus |
2R | 25286936 | 2R | 18641459..18641575 | 28..144 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:07:34 has no hits.
BO15506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:40 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5473-PA | 248..933 | 16..701 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:17 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5473-PB | 248..933 | 16..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:48:31 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RA | 496..1184 | 11..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:23 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RA | 496..1184 | 11..701 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:23 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18641859..18642067 | 304..512 | 100 | <- | Plus |
2R | 18642132..18642318 | 513..701 | 98 | | Plus |
2R | 18641452..18641572 | 19..141 | 96 | <- | Plus |
2R | 18641635..18641796 | 142..303 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:48:31 Download gff for
BO15506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14529364..14529572 | 304..512 | 100 | <- | Plus |
arm_2R | 14528957..14529077 | 19..141 | 96 | <- | Plus |
arm_2R | 14529140..14529301 | 142..303 | 100 | <- | Plus |
arm_2R | 14529637..14529823 | 513..701 | 98 | | Plus |
BO15506.5prime Sequence
830 bp (750 high quality bases) assembled on 2006-05-30
> BO15506.5prime
GAAGTTATCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTG
BO15506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5473-PA | 933 | SP2637-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
CG5473-PB | 933 | SP2637-RB | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SP2637-RD | 1876 | CG5473-RD | 359..1172 | 17..830 | 4070 | 100 | Plus |
SP2637-RC | 1770 | CG5473-RC | 253..1066 | 17..830 | 4070 | 100 | Plus |
SP2637-RB | 1450 | CG5473-RB | 359..1172 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18642404..18642657 | 270..17 | 1270 | 100 | Minus |
2R | 25286936 | 2R | 18641857..18642067 | 663..453 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 18642132..18642315 | 452..269 | 920 | 100 | Minus |
2R | 25286936 | 2R | 18641635..18641797 | 823..661 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:56:37 has no hits.
BO15506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:41 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5473-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:19 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5473-PB | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:10 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RB | 351..1172 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:28 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RB | 351..1172 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:28 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18641630..18641796 | 662..830 | 97 | <- | Minus |
2R | 18641859..18642067 | 453..661 | 100 | <- | Minus |
2R | 18642132..18642314 | 270..452 | 100 | <- | Minus |
2R | 18642405..18642661 | 9..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:10 Download gff for
BO15506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14529135..14529301 | 662..830 | 97 | <- | Minus |
arm_2R | 14529364..14529572 | 453..661 | 100 | <- | Minus |
arm_2R | 14529637..14529819 | 270..452 | 100 | <- | Minus |
arm_2R | 14529910..14530166 | 9..269 | 98 | | Minus |
BO15506.complete Sequence
964 bp (964 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633498
> BO15506.complete
GAAGTTATCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTGCCACCATTAGGTTTATACAG
GAGAATCAGTTCCCCGCCGTCACCGTTTTCAGGGACAATCGGCCGCGCTA
CTTCCGGCGGGATGACGCCACGGGCTTCTGGGTGCTGATACAAGATGCAA
GCTTTCTAGACCAT
BO15506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SP2637-RB | 933 | CG5473-PB | 1..930 | 17..946 | 4650 | 100 | Plus |
SP2637-RA | 933 | CG5473-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
SP2637-RD | 933 | CG5473-PD | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SP2637-RB | 1450 | CG5473-RB | 359..1288 | 17..946 | 4650 | 100 | Plus |
SP2637-RA | 1340 | CG5473-RA | 249..1178 | 17..946 | 4650 | 100 | Plus |
SP2637-RD | 1876 | CG5473-RD | 359..1279 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18642404..18642657 | 270..17 | 1270 | 100 | Minus |
2R | 25286936 | 2R | 18641857..18642067 | 663..453 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 18642132..18642315 | 452..269 | 920 | 100 | Minus |
2R | 25286936 | 2R | 18641635..18641797 | 823..661 | 815 | 100 | Minus |
2R | 25286936 | 2R | 18641459..18641575 | 937..821 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:53 has no hits.
BO15506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:31 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RB | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:39 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RB | 347..1290 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RA | 249..1178 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:31 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RB | 347..1290 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:04 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP2637-RA | 249..1178 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:04 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18641452..18641572 | 824..946 | 96 | <- | Minus |
2R | 18641635..18641796 | 662..823 | 100 | <- | Minus |
2R | 18641859..18642067 | 453..661 | 100 | <- | Minus |
2R | 18642132..18642314 | 270..452 | 100 | <- | Minus |
2R | 18642405..18642657 | 17..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:47 Download gff for
BO15506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14528957..14529077 | 824..946 | 96 | <- | Minus |
arm_2R | 14529140..14529301 | 662..823 | 100 | <- | Minus |
arm_2R | 14529364..14529572 | 453..661 | 100 | <- | Minus |
arm_2R | 14529637..14529819 | 270..452 | 100 | <- | Minus |
arm_2R | 14529910..14530162 | 17..269 | 100 | | Minus |
BO15506.pep Sequence
Translation from 16 to 964
> BO15506.pep
MVLVLNGVLQDDCPMDTNSLFLQHPVYRDYAQQLHSIQAKSVGPVGLLYV
GQREMAASAPHDKHVNIIGADDATTCIIVVVRHSGSGAVALAHFDGSGVD
EAVCTMVSRVQELAVGYPEGRIELQLIGGYRDAKGYGEDVFFSIMQSFHN
HLLEIDLTQACVGELNTMMRGEINCPIIYGVGVNIKTGEIFPASFPDRGP
DRELRDARIFMGAQSVLDIYDSSLGMLRIGPFNYDPLRGADLWLSQTDEF
LLQHLSSSPDVEPPHFAPQTRATIRFIQENQFPAVTVFRDNRPRYFRRDD
ATGFWVLIQDASFLDH
BO15506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SP2637-PB | 310 | CG5473-PB | 1..310 | 1..310 | 1630 | 100 | Plus |
SP2637-PA | 310 | CG5473-PA | 1..310 | 1..310 | 1630 | 100 | Plus |
SP2637-PD | 310 | CG5473-PD | 1..309 | 1..309 | 1619 | 99.4 | Plus |
SP2637-PC | 310 | CG5473-PC | 1..309 | 1..309 | 1619 | 99.4 | Plus |