Clone BO15506 Report

Search the DGRC for BO15506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptSP2637-RA
Protein status:BO15506.pep: validated full length
Sequenced Size:964

Clone Sequence Records

BO15506.3prime Sequence

701 bp (699 high quality bases) assembled on 2006-05-30

> BO15506.3prime
ATGGTCTAGAAAGCTTGCATCTTGTATCAGCACCCAGAAGCCCGTGGCGT
CATCCCGCCGGAAGTAGCGCGGCCGATTGTCCCTGAAAACGGTGACGGCG
GGGAACTGATTCTCCTGTATAAACCTAATGGTGGCACGCGTCTGAGGCGC
AAAGTGAGGCGGCTCCACGTCTGGACTGGAGGACAGGTGCTGCAACAGAA
ACTCATCCGTTTGTGATAGCCACAGATCAGCGCCGCGCAAAGGATCGTAG
TTAAAGGGTCCAATGCGTAGCATGCCCAGCGAGGAGTCGTATATATCCAG
AACCGACTGCGCGCCCATGAAGATGCGAGCATCGCGTAGCTCCCGGTCGG
GTCCTCGGTCTGGAAAGGAGGCCGGAAAGATCTCACCAGTCTTGATGTTC
ACGCCCACTCCATAGATGATGGGGCAGTTGATCTCGCCGCGCATCATGGT
ATTTAGCTCGCCCACGCAAGCCTGCGTCAGATCGATTTCAAGTAGGTGAT
TGTGGAATGATTGCATAATGCTGAAGAATACGTCCTCGCCGTATCCCTTG
GCATCGCGATAGCCACCAATCAACTGCAACTCGATGCGACCCTCCGGATA
GCCGACGGCCAGCTCCTGAACCCGCGACACCATGGTGCACACAGCCTCGT
CCACGCCGCTGCCATCGAAGTGCGCCAGGGCCACAGCACCAGATCCGGAG
T

BO15506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5473-PA 933 SP2637-RA 248..930 701..19 3415 100 Minus
CG5473-PB 933 SP2637-RB 248..930 701..19 3415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
SP2637-RB 1450 CG5473-RB 606..1288 701..19 3415 100 Minus
SP2637-RA 1340 CG5473-RA 496..1178 701..19 3415 100 Minus
SP2637-RD 1876 CG5473-RD 606..1279 701..28 3370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18641857..18642067 302..512 1055 100 Plus
2R 25286936 2R 18642132..18642315 513..696 920 100 Plus
2R 25286936 2R 18641635..18641797 142..304 815 100 Plus
2R 25286936 2R 18641459..18641575 28..144 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:07:34 has no hits.

BO15506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:40 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5473-PA 248..933 16..701 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:17 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5473-PB 248..933 16..701 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:48:31 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
SP2637-RA 496..1184 11..701 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:23 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
SP2637-RA 496..1184 11..701 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:23 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18641859..18642067 304..512 100 <- Plus
2R 18642132..18642318 513..701 98   Plus
2R 18641452..18641572 19..141 96 <- Plus
2R 18641635..18641796 142..303 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:48:31 Download gff for BO15506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14529364..14529572 304..512 100 <- Plus
arm_2R 14528957..14529077 19..141 96 <- Plus
arm_2R 14529140..14529301 142..303 100 <- Plus
arm_2R 14529637..14529823 513..701 98   Plus

BO15506.5prime Sequence

830 bp (750 high quality bases) assembled on 2006-05-30

> BO15506.5prime
GAAGTTATCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTG

BO15506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5473-PA 933 SP2637-RA 1..814 17..830 4070 100 Plus
CG5473-PB 933 SP2637-RB 1..814 17..830 4070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
SP2637-RD 1876 CG5473-RD 359..1172 17..830 4070 100 Plus
SP2637-RC 1770 CG5473-RC 253..1066 17..830 4070 100 Plus
SP2637-RB 1450 CG5473-RB 359..1172 17..830 4070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18642404..18642657 270..17 1270 100 Minus
2R 25286936 2R 18641857..18642067 663..453 1055 100 Minus
2R 25286936 2R 18642132..18642315 452..269 920 100 Minus
2R 25286936 2R 18641635..18641797 823..661 815 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:56:37 has no hits.

BO15506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:41 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5473-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:19 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5473-PB 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:10 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
SP2637-RB 351..1172 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:28 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
SP2637-RB 351..1172 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:28 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18641630..18641796 662..830 97 <- Minus
2R 18641859..18642067 453..661 100 <- Minus
2R 18642132..18642314 270..452 100 <- Minus
2R 18642405..18642661 9..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:10 Download gff for BO15506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14529135..14529301 662..830 97 <- Minus
arm_2R 14529364..14529572 453..661 100 <- Minus
arm_2R 14529637..14529819 270..452 100 <- Minus
arm_2R 14529910..14530166 9..269 98   Minus

BO15506.complete Sequence

964 bp (964 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633498

> BO15506.complete
GAAGTTATCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTGCCACCATTAGGTTTATACAG
GAGAATCAGTTCCCCGCCGTCACCGTTTTCAGGGACAATCGGCCGCGCTA
CTTCCGGCGGGATGACGCCACGGGCTTCTGGGTGCTGATACAAGATGCAA
GCTTTCTAGACCAT

BO15506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
SP2637-RB 933 CG5473-PB 1..930 17..946 4650 100 Plus
SP2637-RA 933 CG5473-PA 1..930 17..946 4650 100 Plus
SP2637-RD 933 CG5473-PD 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
SP2637-RB 1450 CG5473-RB 359..1288 17..946 4650 100 Plus
SP2637-RA 1340 CG5473-RA 249..1178 17..946 4650 100 Plus
SP2637-RD 1876 CG5473-RD 359..1279 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18642404..18642657 270..17 1270 100 Minus
2R 25286936 2R 18641857..18642067 663..453 1055 100 Minus
2R 25286936 2R 18642132..18642315 452..269 920 100 Minus
2R 25286936 2R 18641635..18641797 823..661 815 100 Minus
2R 25286936 2R 18641459..18641575 937..821 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:26:53 has no hits.

BO15506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:31 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
SP2637-RB 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:39 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
SP2637-RB 347..1290 9..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
SP2637-RA 249..1178 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:31 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
SP2637-RB 347..1290 9..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:04 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
SP2637-RA 249..1178 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:04 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18641452..18641572 824..946 96 <- Minus
2R 18641635..18641796 662..823 100 <- Minus
2R 18641859..18642067 453..661 100 <- Minus
2R 18642132..18642314 270..452 100 <- Minus
2R 18642405..18642657 17..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:47 Download gff for BO15506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14528957..14529077 824..946 96 <- Minus
arm_2R 14529140..14529301 662..823 100 <- Minus
arm_2R 14529364..14529572 453..661 100 <- Minus
arm_2R 14529637..14529819 270..452 100 <- Minus
arm_2R 14529910..14530162 17..269 100   Minus

BO15506.pep Sequence

Translation from 16 to 964

> BO15506.pep
MVLVLNGVLQDDCPMDTNSLFLQHPVYRDYAQQLHSIQAKSVGPVGLLYV
GQREMAASAPHDKHVNIIGADDATTCIIVVVRHSGSGAVALAHFDGSGVD
EAVCTMVSRVQELAVGYPEGRIELQLIGGYRDAKGYGEDVFFSIMQSFHN
HLLEIDLTQACVGELNTMMRGEINCPIIYGVGVNIKTGEIFPASFPDRGP
DRELRDARIFMGAQSVLDIYDSSLGMLRIGPFNYDPLRGADLWLSQTDEF
LLQHLSSSPDVEPPHFAPQTRATIRFIQENQFPAVTVFRDNRPRYFRRDD
ATGFWVLIQDASFLDH

BO15506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
SP2637-PB 310 CG5473-PB 1..310 1..310 1630 100 Plus
SP2637-PA 310 CG5473-PA 1..310 1..310 1630 100 Plus
SP2637-PD 310 CG5473-PD 1..309 1..309 1619 99.4 Plus
SP2637-PC 310 CG5473-PC 1..309 1..309 1619 99.4 Plus