Clone Sequence Records
BO15511.3prime Sequence
830 bp (779 high quality bases) assembled on 2006-05-30
> BO15511.3prime
ATGGTCTAGAAAGCTTGCGAAATCCGTGTATCGCTGTCGCAGACTCTGCC
TTTTGGCAACGTGATGCATCAAGCGCTGCTGACGTCGTTCTCGATTCATT
TCGTAGGCCTTGAGCAGCGAGGGGCACGTGCGCTTGATGAACTCCTCCGA
TTGCCAGAAGAGTCCGCCTTGGTTCTCGTAGCGCAGAAGGAATTCAACCT
TTCCCGCCTTGGTCTCCTTGCCCAGAATGCGTTCAATGCCATTCTCGGGC
TTGATGCGTCTGAAGAAGTCCTCGTCGTTGTACTCGGTGACCACCTCCTC
GCCGACTTCGTTTAGCATATCCTCGATGCTGAGCAGTCCATCCTGCAGCC
GCTCGCCGTTCTGTTCGACGCGCTGCACGTATGTCAACGGGTGCTGCTTG
AGGTAATCCTCCGCCTCGGCGATTGTCTTGGCCAGATCGAACTCCTCCTC
CGCCTCCTCCTGCTCATCGTCATCGTTGTCCTCGTACTCACCGTCCAGCT
CCATGCCATCACAGTTAGCGCCGCTGGGCGAGGAGGTTCGTTTGGTATGC
ATGGAGCGTCGCTTTCTTTTCATCCAGTTCCCGCCGTCGTTTTCCTTGAC
GTCCGGATGGAAGCGTACCTTCTTCACGCGCACGGACGACGAGGCGGAAT
CTGTTGTTTCGGGGGTGGACTGGCTGGGTGTCTGCTGCGACTCCAGCATG
CTGCCGCTGATGCTACTAGAGGCGGACGTGGGTGTTGATGTGGATGTGGA
TGCTGATACGGAGGCGCCGGTGCTCTCCGCCAGCGTGGTTTCCTTGAGGT
TCTGTGATATAAGCTTGACTTTCGTCTCGA
BO15511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9933-PA | 1131 | A16-RA | 317..1128 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 451..1262 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020229..13020862 | 197..830 | 3170 | 100 | Plus |
2L | 23513712 | 2L | 13019798..13019928 | 70..200 | 655 | 100 | Plus |
2L | 23513712 | 2L | 13019679..13019730 | 19..70 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:59:31 has no hits.
BO15511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:42 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-PA | 318..1131 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:20 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9933-PA | 318..1131 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:21 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 452..1262 | 19..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:38 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 452..1262 | 19..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:38 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13019679..13019729 | 19..69 | 100 | <- | Plus |
2L | 13019798..13019926 | 70..198 | 100 | <- | Plus |
2L | 13020231..13020861 | 199..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:21 Download gff for
BO15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13019679..13019729 | 19..69 | 100 | <- | Plus |
arm_2L | 13019798..13019926 | 70..198 | 100 | <- | Plus |
arm_2L | 13020231..13020861 | 199..829 | 100 | | Plus |
BO15511.5prime Sequence
837 bp (752 high quality bases) assembled on 2006-05-30
> BO15511.5prime
GAAGTTATCAGTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCAT
BO15511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9933-PA | 1131 | A16-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 133..955 | 15..837 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020358..13021180 | 837..15 | 4115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:42:34 has no hits.
BO15511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:43 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:21 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9933-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:40 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 128..955 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:27 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 128..955 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:27 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13020358..13021185 | 9..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:40 Download gff for
BO15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13020358..13021185 | 9..837 | 99 | | Minus |
BO15511.complete Sequence
1162 bp (1162 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633499
> BO15511.complete
GAAGTTATCAGTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTT
CAGACGCATCAAGCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGA
CCAAGGCGGGAAAGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGA
CTCTTCTGGCAATCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCT
CAAGGCCTACGAAATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATC
ACGTTGCCAAAAGGCAGAGTCTGCGACAGCGATACACGGATTTCGCAAGC
TTTCTAGACCAT
BO15511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1131 | CG9933-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 133..1262 | 15..1144 | 5650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020229..13021180 | 966..15 | 4760 | 100 | Minus |
2L | 23513712 | 2L | 13019798..13019928 | 1093..963 | 655 | 100 | Minus |
2L | 23513712 | 2L | 13019679..13019730 | 1144..1093 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:59 has no hits.
BO15511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:32 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 1..1131 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:41 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 123..1257 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:29 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 135..1262 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:32 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 123..1257 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:58 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 135..1262 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:58 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13019677..13019729 | 1094..1146 | 96 | <- | Minus |
2L | 13019798..13019926 | 965..1093 | 100 | <- | Minus |
2L | 13020231..13021178 | 17..964 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:29 Download gff for
BO15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13019677..13019729 | 1094..1146 | 96 | <- | Minus |
arm_2L | 13019798..13019926 | 965..1093 | 100 | <- | Minus |
arm_2L | 13020231..13021178 | 17..964 | 100 | | Minus |
BO15511.pep Sequence
Translation from 16 to 1162
> BO15511.pep
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDFASFLDH
BO15511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-PA | 376 | CG9933-PA | 1..376 | 1..376 | 1938 | 100 | Plus |