Clone BO15511 Report

Search the DGRC for BO15511

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptA16-RA
Protein status:BO15511.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO15511.3prime Sequence

830 bp (779 high quality bases) assembled on 2006-05-30

> BO15511.3prime
ATGGTCTAGAAAGCTTGCGAAATCCGTGTATCGCTGTCGCAGACTCTGCC
TTTTGGCAACGTGATGCATCAAGCGCTGCTGACGTCGTTCTCGATTCATT
TCGTAGGCCTTGAGCAGCGAGGGGCACGTGCGCTTGATGAACTCCTCCGA
TTGCCAGAAGAGTCCGCCTTGGTTCTCGTAGCGCAGAAGGAATTCAACCT
TTCCCGCCTTGGTCTCCTTGCCCAGAATGCGTTCAATGCCATTCTCGGGC
TTGATGCGTCTGAAGAAGTCCTCGTCGTTGTACTCGGTGACCACCTCCTC
GCCGACTTCGTTTAGCATATCCTCGATGCTGAGCAGTCCATCCTGCAGCC
GCTCGCCGTTCTGTTCGACGCGCTGCACGTATGTCAACGGGTGCTGCTTG
AGGTAATCCTCCGCCTCGGCGATTGTCTTGGCCAGATCGAACTCCTCCTC
CGCCTCCTCCTGCTCATCGTCATCGTTGTCCTCGTACTCACCGTCCAGCT
CCATGCCATCACAGTTAGCGCCGCTGGGCGAGGAGGTTCGTTTGGTATGC
ATGGAGCGTCGCTTTCTTTTCATCCAGTTCCCGCCGTCGTTTTCCTTGAC
GTCCGGATGGAAGCGTACCTTCTTCACGCGCACGGACGACGAGGCGGAAT
CTGTTGTTTCGGGGGTGGACTGGCTGGGTGTCTGCTGCGACTCCAGCATG
CTGCCGCTGATGCTACTAGAGGCGGACGTGGGTGTTGATGTGGATGTGGA
TGCTGATACGGAGGCGCCGGTGCTCTCCGCCAGCGTGGTTTCCTTGAGGT
TCTGTGATATAAGCTTGACTTTCGTCTCGA

BO15511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9933-PA 1131 A16-RA 317..1128 830..19 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 451..1262 830..19 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13020862 197..830 3170 100 Plus
2L 23513712 2L 13019798..13019928 70..200 655 100 Plus
2L 23513712 2L 13019679..13019730 19..70 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:59:31 has no hits.

BO15511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:42 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-PA 318..1131 18..829 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:20 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9933-PA 318..1131 18..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:21 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 452..1262 19..829 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:38 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 452..1262 19..829 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:38 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13019679..13019729 19..69 100 <- Plus
2L 13019798..13019926 70..198 100 <- Plus
2L 13020231..13020861 199..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:21 Download gff for BO15511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13019679..13019729 19..69 100 <- Plus
arm_2L 13019798..13019926 70..198 100 <- Plus
arm_2L 13020231..13020861 199..829 100   Plus

BO15511.5prime Sequence

837 bp (752 high quality bases) assembled on 2006-05-30

> BO15511.5prime
GAAGTTATCAGTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCAT

BO15511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9933-PA 1131 A16-RA 1..821 17..837 4105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 133..955 15..837 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020358..13021180 837..15 4115 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:42:34 has no hits.

BO15511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:43 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:21 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9933-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:40 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 128..955 9..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:27 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 128..955 9..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:27 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13020358..13021185 9..837 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:40 Download gff for BO15511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13020358..13021185 9..837 99   Minus

BO15511.complete Sequence

1162 bp (1162 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633499

> BO15511.complete
GAAGTTATCAGTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTT
CAGACGCATCAAGCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGA
CCAAGGCGGGAAAGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGA
CTCTTCTGGCAATCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCT
CAAGGCCTACGAAATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATC
ACGTTGCCAAAAGGCAGAGTCTGCGACAGCGATACACGGATTTCGCAAGC
TTTCTAGACCAT

BO15511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1131 CG9933-PA 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 133..1262 15..1144 5650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13021180 966..15 4760 100 Minus
2L 23513712 2L 13019798..13019928 1093..963 655 100 Minus
2L 23513712 2L 13019679..13019730 1144..1093 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:59 has no hits.

BO15511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:32 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 17..1145 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:41 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 123..1257 9..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:29 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 135..1262 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:32 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 123..1257 9..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:58 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 135..1262 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:58 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13019677..13019729 1094..1146 96 <- Minus
2L 13019798..13019926 965..1093 100 <- Minus
2L 13020231..13021178 17..964 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:29 Download gff for BO15511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13019677..13019729 1094..1146 96 <- Minus
arm_2L 13019798..13019926 965..1093 100 <- Minus
arm_2L 13020231..13021178 17..964 100   Minus

BO15511.pep Sequence

Translation from 16 to 1162

> BO15511.pep
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDFASFLDH

BO15511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
A16-PA 376 CG9933-PA 1..376 1..376 1938 100 Plus