Clone Sequence Records
BO15513.3prime Sequence
801 bp (778 high quality bases) assembled on 2006-05-30
> BO15513.3prime
ATGGTCTAGAAAGCTTGCCTGCATTGCTTCGGTGTTGGCTTGCCAAATAA
CGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGTT
ATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATATT
TAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGAC
AGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTTA
TATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGATT
CATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACTT
GGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTGA
CTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCCA
TAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTTA
TAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAGG
AATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAGT
GAGCCAACCTCTACGCAGTCCCTGCTGTTCAGCCAAAGAACGTTCAACGT
TTCTTAACTTATCAAAGAATAGCTCATTGGATATGTATATATTCCAACCC
ATAGCGGAAAGAAATTCGAGCTCGACTGCCTTGAGCCTATCTTCCGTCAT
ACAAGCGTCACTGGCCCAGTCTTCCAGATAGAACCGTTCGTCGTGGCCCG
C
BO15513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:37:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RE | 1203 | CG40191-RE | 95..877 | 801..19 | 3915 | 100 | Minus |
CG40191-RC | 1518 | CG40191-RC | 597..1379 | 801..19 | 3915 | 100 | Minus |
CG40191-RD | 1386 | CG40191-RD | 417..1199 | 801..19 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266023 | 700..19 | 3410 | 100 | Minus |
2R | 25286936 | 2R | 1265192..1265294 | 801..699 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:00:31 has no hits.
BO15513.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:47:22 Download gff for
BO15513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 417..1204 | 11..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:30:40 Download gff for
BO15513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 417..1204 | 11..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:30:40 Download gff for
BO15513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1265192..1265293 | 700..801 | 100 | -> | Minus |
2R | 1265343..1266028 | 11..699 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:47:22 Download gff for
BO15513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391825..391926 | 700..801 | 100 | -> | Minus |
2RHet | 391976..392661 | 11..699 | 99 | | Minus |
BO15513.5prime Sequence
819 bp (768 high quality bases) assembled on 2006-05-30
> BO15513.5prime
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGC
ATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCT
TTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGG
CTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGA
TTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGAC
TGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCT
CGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTAT
TCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGA
CTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAG
CCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAA
GCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGC
CAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTT
CACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCA
CACCTTTTATTAATGTCCA
BO15513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:37:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 246..1048 | 17..819 | 4015 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 66..868 | 17..819 | 4015 | 100 | Plus |
CG40191-RA | 2923 | CG40191-RA | 66..868 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1265692 | 469..819 | 1755 | 100 | Plus |
2R | 25286936 | 2R | 1264546..1264841 | 51..346 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 347..470 | 620 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264495 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:03:05 has no hits.
BO15513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:07 Download gff for
BO15513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 63..867 | 14..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:26 Download gff for
BO15513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 63..867 | 14..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:26 Download gff for
BO15513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264455..1264493 | 14..52 | 97 | -> | Plus |
2R | 1264548..1264841 | 53..346 | 100 | -> | Plus |
2R | 1265171..1265293 | 347..469 | 100 | -> | Plus |
2R | 1265343..1265691 | 470..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:07 Download gff for
BO15513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391088..391126 | 14..52 | 97 | -> | Plus |
2RHet | 391181..391474 | 53..346 | 100 | -> | Plus |
2RHet | 391804..391926 | 347..469 | 100 | -> | Plus |
2RHet | 391976..392324 | 470..818 | 100 | | Plus |
BO15513.complete Sequence
1168 bp (1168 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633500
> BO15513.complete
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGC
ATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCT
TTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGG
CTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGA
TTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGAC
TGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCT
CGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTAT
TCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGA
CTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAG
CCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAA
GCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGC
CAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTT
CACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCA
CACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAGTAAC
GTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGGCAAG
ACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCTACGC
TTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCAAGAT
GGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACAAAAA
CAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAGCAAA
AGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAATGCAG
GCAAGCTTTCTAGACCAT
BO15513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1137 | CG40191-PC | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG40191-RD | 1137 | CG40191-PD | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG40191-RA | 1137 | CG40191-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 246..1379 | 17..1150 | 5670 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 66..1199 | 17..1150 | 5670 | 100 | Plus |
CG40191-RA | 2923 | CG40191-RA | 66..1199 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266023 | 469..1150 | 3410 | 100 | Plus |
2R | 25286936 | 2R | 1264546..1264841 | 51..346 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 347..470 | 620 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264495 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:59:56 has no hits.
BO15513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:33 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 1..1137 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:43 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 83..1224 | 14..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:53 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 66..1199 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:34 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 83..1224 | 14..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:22 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 66..1199 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:22 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264458..1264493 | 17..52 | 100 | -> | Plus |
2R | 1264548..1264841 | 53..346 | 100 | -> | Plus |
2R | 1265171..1265293 | 347..469 | 100 | -> | Plus |
2R | 1265343..1266023 | 470..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:53 Download gff for
BO15513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391091..391126 | 17..52 | 100 | -> | Plus |
2RHet | 391181..391474 | 53..346 | 100 | -> | Plus |
2RHet | 391804..391926 | 347..469 | 100 | -> | Plus |
2RHet | 391976..392656 | 470..1152 | 99 | | Plus |
BO15513.pep Sequence
Translation from 16 to 1168
> BO15513.pep
MGRFKLCASPREVMKYEDFIKRIRKSLYYGVGTPDTEMSVSLPFAEYAAD
LFSETHRGHSLHRLSCVSAAQVHATPCSLIMALIYLDRLNVIDSGYSCRI
TPQQLFVVSLMISTKFYAGHDERFYLEDWASDACMTEDRLKAVELEFLSA
MGWNIYISNELFFDKLRNVERSLAEQQGLRRGWLTYSELVQLLPSLEWTK
FLVNSLSVLSLSYAASIITLAGAFFIASQVPGTLWHRDVETASDFTMTIS
SQVSVSNALESTPFINVQVSSLLRKTSNVNVELMNLEKTSCARARLNKIE
YKHPRHQSVPTLSFISTCPQLDLLYAQDGTRNWLNIKSPNSDYKNNRNLS
ITVRSVQLEEQKAENDSVIWQANTEAMQASFLDH
BO15513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-PC | 378 | CG40191-PC | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PD | 378 | CG40191-PD | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PA | 378 | CG40191-PA | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PB | 396 | CG40191-PB | 1..396 | 1..378 | 1912 | 95.5 | Plus |
CG40191-PE | 268 | CG40191-PE | 1..268 | 111..378 | 1371 | 100 | Plus |