Clone BO15517 Report

Search the DGRC for BO15517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptHis3.3B-RA
Protein status:BO15517.pep:
Sequenced Size:442

Clone Sequence Records

BO15517.3prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-30

> BO15517.3prime
ATGGTCTAGAAAGCTTGCAGCACGCTCGCCACGGATGCGGCGCGCCAACT
GGATGTCCTTAGGCATGATTGTCACGCGCTTGGCGTGGATAGCGCACAAG
TTGGTGTCCTCGAAGAGACCCACCAGGTACGCCTCAGATGCTTCCTGCAA
GGCACCGATGGCAGCCGACTGGAAACGCAGATCGGTCTTGAAATCCTGAG
CGATTTCACGAACCAGACGCTGGAAGGGCAGCTTGCGGATGAGCAACTCG
GTCGACTTCTGGTAACGACGGATCTCACGAAGAGCCACAGTTCCGGGACG
ATAACGATGGGGCTTCTTCACTCCGCCGGTGGATGGCGCCGATTTACGGG
CAGCCTTGGTGGCTAGCTGCTTACGAGGAGCCTTTCCTCCGGTCGACTTA
CGGGCAGTCTGCTTAGTACGAGCCATGTCGACTGATAACT

BO15517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8989-PA 411 His3.3B-RA 1..408 426..19 2040 100 Minus
CG8989-PC 411 His3.3B-RC 1..408 426..19 2040 100 Minus
CG8989-PB 411 His3.3B-RB 1..408 426..19 2040 100 Minus
CG5825-PA 411 His3.3A-RA 1..215 426..212 475 88.8 Minus
CG5825-PB 372 His3.3A-RB 1..215 426..212 475 88.8 Minus
CG5825-PA 411 His3.3A-RA 292..378 135..49 185 88.5 Minus
CG31613-PA 411 His3:CG31613-RA 187..233 240..194 185 95.7 Minus
CG33803-PA 411 His3:CG33803-RA 187..233 240..194 185 95.7 Minus
CG33806-PA 411 His3:CG33806-RA 187..233 240..194 185 95.7 Minus
CG33809-PA 411 His3:CG33809-RA 187..233 240..194 185 95.7 Minus
CG33848-PA 411 His3:CG33848-RA 187..233 240..194 185 95.7 Minus
CG33863-PA 411 His3:CG33863-RA 187..233 240..194 185 95.7 Minus
CG33812-PA 411 His3:CG33812-RA 187..233 240..194 185 95.7 Minus
CG33815-PA 411 His3:CG33815-RA 187..233 240..194 185 95.7 Minus
CG33833-PA 411 His3:CG33833-RA 187..233 240..194 185 95.7 Minus
CG33836-PA 411 His3:CG33836-RA 187..233 240..194 185 95.7 Minus
CG33839-PA 411 His3:CG33839-RA 187..233 240..194 185 95.7 Minus
CG33842-PA 411 His3:CG33842-RA 187..233 240..194 185 95.7 Minus
CG33845-PA 411 His3:CG33845-RA 187..233 240..194 185 95.7 Minus
CG33851-PA 411 His3:CG33851-RA 187..233 240..194 185 95.7 Minus
CG33854-PA 411 His3:CG33854-RA 187..233 240..194 185 95.7 Minus
CG33857-PA 411 His3:CG33857-RA 187..233 240..194 185 95.7 Minus
CG33860-PA 411 His3:CG33860-RA 187..233 240..194 185 95.7 Minus
CG33866-PA 411 His3:CG33866-RA 187..233 240..194 185 95.7 Minus
CG33830-PA 411 His3:CG33830-RA 187..230 240..197 170 95.4 Minus
CG33821-PA 411 His3:CG33821-RA 187..230 240..197 170 95.4 Minus
CG33824-PA 411 His3:CG33824-RA 187..230 240..197 170 95.4 Minus
CG33818-PA 411 His3:CG33818-RA 187..230 240..197 170 95.4 Minus
CG33827-PA 411 His3:CG33827-RA 187..230 240..197 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..522 428..19 2050 100 Minus
His3.3B-RB 1537 CG8989-RB 251..660 428..19 2050 100 Minus
His3.3B-RC 1519 CG8989-RC 233..642 428..19 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 144..428 1425 100 Plus
2L 23513712 2L 5055259..5055541 426..144 875 87.3 Minus
2L 23513712 2L 21420186..21420593 426..19 720 78.4 Minus
2L 23513712 2L 21425250..21425657 426..19 720 78.4 Minus
2L 23513712 2L 21430312..21430719 426..19 720 78.4 Minus
2L 23513712 2L 21435356..21435763 426..19 720 78.4 Minus
2L 23513712 2L 21440244..21440651 426..19 720 78.4 Minus
2L 23513712 2L 21454445..21454852 426..19 720 78.4 Minus
2L 23513712 2L 21484738..21485145 426..19 720 78.4 Minus
2L 23513712 2L 21489887..21490294 426..19 720 78.4 Minus
2L 23513712 2L 21494932..21495339 426..19 720 78.4 Minus
2L 23513712 2L 21499977..21500384 426..19 720 78.4 Minus
2L 23513712 2L 21505030..21505437 426..19 720 78.4 Minus
2L 23513712 2L 21510075..21510482 426..19 720 78.4 Minus
2L 23513712 2L 21515119..21515526 426..19 720 78.4 Minus
2L 23513712 2L 21520166..21520573 426..19 720 78.4 Minus
2L 23513712 2L 21525009..21525416 426..19 720 78.4 Minus
2L 23513712 2L 21529852..21530259 426..19 720 78.4 Minus
2L 23513712 2L 21534693..21535100 426..19 720 78.4 Minus
2L 23513712 2L 21541210..21541617 426..19 720 78.4 Minus
2L 23513712 2L 21459504..21459911 426..19 705 78.2 Minus
2L 23513712 2L 21464564..21464971 426..19 705 78.2 Minus
2L 23513712 2L 21469607..21470014 426..19 705 78.2 Minus
2L 23513712 2L 21474650..21475057 426..19 705 78.2 Minus
2L 23513712 2L 21479693..21480100 426..19 705 78.2 Minus
X 23542271 X 9154115..9154247 19..151 650 99.2 Plus
2L 23513712 2L 21405669..21405967 317..19 565 79.3 Minus
2L 23513712 2L 5055640..5055752 135..23 355 87.6 Minus
3R 32079331 3R 1431192..1431302 136..26 210 79.3 Minus
Blast to na_te.dros performed on 2015-01-31 10:34:05 has no hits.

BO15517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:51 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PB 1..411 15..426 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:29 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 15..426 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:40:41 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..646 14..433 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:01 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..646 14..433 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:01 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9154111..9154240 14..144 98 <- Plus
X 9154380..9154668 145..433 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:40:41 Download gff for BO15517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048144..9048273 14..144 98 <- Plus
arm_X 9048413..9048701 145..433 98   Plus

BO15517.5prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-30

> BO15517.5prime
GAAGTTATCAGTCGACATGGCTCGTACTAAGCAGACTGCCCGTAAGTCGA
CCGGAGGAAAGGCTCCTCGTAAGCAGCTAGCCACCAAGGCTGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCCCATCGTTATCGTCCCGG
AACTGTGGCTCTTCGTGAGATCCGTCGTTACCAGAAGTCGACCGAGTTGC
TCATCCGCAAGCTGCCCTTCCAGCGTCTGGTTCGTGAAATCGCTCAGGAT
TTCAAGACCGATCTGCGTTTCCAGTCGGCTGCCATCGGTGCCTTGCAGGA
AGCATCTGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACTTGTGCG
CTATCCACGCCAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCG
CGCCGCATCCGTGGCGAGCGTGCTGCAAGCTTTCTAGACC

BO15517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8989-PA 411 His3.3B-RA 1..408 17..424 2040 100 Plus
CG8989-PC 411 His3.3B-RC 1..408 17..424 2040 100 Plus
CG8989-PB 411 His3.3B-RB 1..408 17..424 2040 100 Plus
CG5825-PA 411 His3.3A-RA 1..215 17..231 475 88.8 Plus
CG5825-PB 372 His3.3A-RB 1..215 17..231 475 88.8 Plus
CG5825-PA 411 His3.3A-RA 292..378 308..394 185 88.5 Plus
CG31613-PA 411 His3:CG31613-RA 187..233 203..249 185 95.7 Plus
CG33803-PA 411 His3:CG33803-RA 187..233 203..249 185 95.7 Plus
CG33806-PA 411 His3:CG33806-RA 187..233 203..249 185 95.7 Plus
CG33809-PA 411 His3:CG33809-RA 187..233 203..249 185 95.7 Plus
CG33848-PA 411 His3:CG33848-RA 187..233 203..249 185 95.7 Plus
CG33863-PA 411 His3:CG33863-RA 187..233 203..249 185 95.7 Plus
CG33812-PA 411 His3:CG33812-RA 187..233 203..249 185 95.7 Plus
CG33815-PA 411 His3:CG33815-RA 187..233 203..249 185 95.7 Plus
CG33833-PA 411 His3:CG33833-RA 187..233 203..249 185 95.7 Plus
CG33836-PA 411 His3:CG33836-RA 187..233 203..249 185 95.7 Plus
CG33839-PA 411 His3:CG33839-RA 187..233 203..249 185 95.7 Plus
CG33842-PA 411 His3:CG33842-RA 187..233 203..249 185 95.7 Plus
CG33845-PA 411 His3:CG33845-RA 187..233 203..249 185 95.7 Plus
CG33851-PA 411 His3:CG33851-RA 187..233 203..249 185 95.7 Plus
CG33854-PA 411 His3:CG33854-RA 187..233 203..249 185 95.7 Plus
CG33857-PA 411 His3:CG33857-RA 187..233 203..249 185 95.7 Plus
CG33860-PA 411 His3:CG33860-RA 187..233 203..249 185 95.7 Plus
CG33866-PA 411 His3:CG33866-RA 187..233 203..249 185 95.7 Plus
CG33830-PA 411 His3:CG33830-RA 187..230 203..246 170 95.4 Plus
CG33821-PA 411 His3:CG33821-RA 187..230 203..246 170 95.4 Plus
CG33824-PA 411 His3:CG33824-RA 187..230 203..246 170 95.4 Plus
CG33818-PA 411 His3:CG33818-RA 187..230 203..246 170 95.4 Plus
CG33827-PA 411 His3:CG33827-RA 187..230 203..246 170 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..522 15..424 2050 100 Plus
His3.3B-RB 1537 CG8989-RB 251..660 15..424 2050 100 Plus
His3.3B-RC 1519 CG8989-RC 233..642 15..424 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 299..15 1425 100 Minus
2L 23513712 2L 5055259..5055541 17..299 875 87.3 Plus
2L 23513712 2L 21420186..21420593 17..424 720 78.4 Plus
2L 23513712 2L 21425250..21425657 17..424 720 78.4 Plus
2L 23513712 2L 21430312..21430719 17..424 720 78.4 Plus
2L 23513712 2L 21435356..21435763 17..424 720 78.4 Plus
2L 23513712 2L 21440244..21440651 17..424 720 78.4 Plus
2L 23513712 2L 21454445..21454852 17..424 720 78.4 Plus
2L 23513712 2L 21484738..21485145 17..424 720 78.4 Plus
2L 23513712 2L 21489887..21490294 17..424 720 78.4 Plus
2L 23513712 2L 21494932..21495339 17..424 720 78.4 Plus
2L 23513712 2L 21499977..21500384 17..424 720 78.4 Plus
2L 23513712 2L 21505030..21505437 17..424 720 78.4 Plus
2L 23513712 2L 21510075..21510482 17..424 720 78.4 Plus
2L 23513712 2L 21515119..21515526 17..424 720 78.4 Plus
2L 23513712 2L 21520166..21520573 17..424 720 78.4 Plus
2L 23513712 2L 21525009..21525416 17..424 720 78.4 Plus
2L 23513712 2L 21529852..21530259 17..424 720 78.4 Plus
2L 23513712 2L 21534693..21535100 17..424 720 78.4 Plus
2L 23513712 2L 21541210..21541617 17..424 720 78.4 Plus
2L 23513712 2L 21459504..21459911 17..424 705 78.2 Plus
2L 23513712 2L 21464564..21464971 17..424 705 78.2 Plus
2L 23513712 2L 21469607..21470014 17..424 705 78.2 Plus
2L 23513712 2L 21474650..21475057 17..424 705 78.2 Plus
2L 23513712 2L 21479693..21480100 17..424 705 78.2 Plus
X 23542271 X 9154115..9154247 424..292 650 99.2 Minus
2L 23513712 2L 21405669..21405967 126..424 565 79.3 Plus
2L 23513712 2L 5055640..5055752 308..420 355 87.6 Plus
3R 32079331 3R 1431192..1431302 307..417 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:47:12 has no hits.

BO15517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:49:52 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PB 1..411 17..428 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:30 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:30 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..646 10..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:27 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..646 10..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:27 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9154111..9154240 299..429 98 <- Minus
X 9154380..9154668 10..298 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:30 Download gff for BO15517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048144..9048273 299..429 98 <- Minus
arm_X 9048413..9048701 10..298 98   Minus

BO15517.complete Sequence

442 bp (442 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633501

> BO15517.complete
GAAGTTATCAGTCGACATGGCTCGTACTAAGCAGACTGCCCGTAAGTCGA
CCGGAGGAAAGGCTCCTCGTAAGCAGCTAGCCACCAAGGCTGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCCCATCGTTATCGTCCCGG
AACTGTGGCTCTTCGTGAGATCCGTCGTTACCAGAAGTCGACCGAGTTGC
TCATCCGCAAGCTGCCCTTCCAGCGTCTGGTTCGTGAAATCGCTCAGGAT
TTCAAGACCGATCTGCGTTTCCAGTCGGCTGCCATCGGTGCCTTGCAGGA
AGCATCTGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACTTGTGCG
CTATCCACGCCAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCG
CGCCGCATCCGTGGCGAGCGTGCTGCAAGCTTTCTAGACCAT

BO15517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 411 CG8989-PE 1..408 17..424 2040 100 Plus
His3.3B-RB 411 CG8989-PB 1..408 17..424 2040 100 Plus
His3.3B-RC 411 CG8989-PC 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..522 15..424 2050 100 Plus
His3.3B-RB 1537 CG8989-RB 251..660 15..424 2050 100 Plus
His3.3B-RC 1519 CG8989-RC 233..642 15..424 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 299..15 1425 100 Minus
2L 23513712 2L 5055259..5055541 17..299 875 87.3 Plus
2L 23513712 2L 21420186..21420593 17..424 720 78.4 Plus
2L 23513712 2L 21425250..21425657 17..424 720 78.4 Plus
2L 23513712 2L 21430312..21430719 17..424 720 78.4 Plus
2L 23513712 2L 21435356..21435763 17..424 720 78.4 Plus
2L 23513712 2L 21440244..21440651 17..424 720 78.4 Plus
2L 23513712 2L 21454445..21454852 17..424 720 78.4 Plus
2L 23513712 2L 21484738..21485145 17..424 720 78.4 Plus
2L 23513712 2L 21489887..21490294 17..424 720 78.4 Plus
2L 23513712 2L 21494932..21495339 17..424 720 78.4 Plus
2L 23513712 2L 21499977..21500384 17..424 720 78.4 Plus
2L 23513712 2L 21505030..21505437 17..424 720 78.4 Plus
2L 23513712 2L 21510075..21510482 17..424 720 78.4 Plus
2L 23513712 2L 21515119..21515526 17..424 720 78.4 Plus
2L 23513712 2L 21520166..21520573 17..424 720 78.4 Plus
2L 23513712 2L 21525009..21525416 17..424 720 78.4 Plus
2L 23513712 2L 21529852..21530259 17..424 720 78.4 Plus
2L 23513712 2L 21534693..21535100 17..424 720 78.4 Plus
2L 23513712 2L 21541210..21541617 17..424 720 78.4 Plus
2L 23513712 2L 21459504..21459911 17..424 705 78.2 Plus
2L 23513712 2L 21464564..21464971 17..424 705 78.2 Plus
2L 23513712 2L 21469607..21470014 17..424 705 78.2 Plus
2L 23513712 2L 21474650..21475057 17..424 705 78.2 Plus
2L 23513712 2L 21479693..21480100 17..424 705 78.2 Plus
X 23542271 X 9154115..9154247 424..292 650 99.2 Minus
2L 23513712 2L 21405669..21405967 126..424 565 79.3 Plus
2L 23513712 2L 5055640..5055752 308..420 355 87.6 Plus
3R 32079331 3R 1431192..1431302 307..417 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 01:31:19 has no hits.

BO15517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:07 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 1..411 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:31 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 239..657 10..429 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:56 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 235..642 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:07 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 239..657 10..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:08 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 235..642 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:08 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
X 9154113..9154240 299..426 98 <- Minus
X 9154380..9154661 17..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:56 Download gff for BO15517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048146..9048273 299..426 98 <- Minus
arm_X 9048413..9048694 17..298 100   Minus

BO15517.pep Sequence

Translation from 16 to 442

> BO15517.pep
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERAASFLDH

BO15517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3A-PD 136 CG5825-PD 1..136 1..136 676 100 Plus
His3.3A-PC 136 CG5825-PC 1..136 1..136 676 100 Plus
His3.3A-PA 136 CG5825-PA 1..136 1..136 676 100 Plus
His3.3B-PE 136 CG8989-PE 1..136 1..136 676 100 Plus
His3.3B-PB 136 CG8989-PB 1..136 1..136 676 100 Plus