Clone Sequence Records
BO15529.3prime Sequence
735 bp (687 high quality bases) assembled on 2006-05-30
> BO15529.3prime
ATGGTCTAGAAAGCTTGCCGAGTGAACACTGTGGGTGCCAATCTTGCCGT
TGTCATCGACGGAGGCTGTCACCGCATGGTATCCCGCCCGCTTGCCATTG
ATATCAACACTTTCGCTCTCGCCGGTGACTAGATCCTTGTAGTTGTTGAC
ATGGCCATTGGAATCGTACGAGTTCTGGGAAGACCACTTGGACTGCTTCT
CCCACTGCTTGGTACGGTAGCCACTGCCCAAGTTTCCGGCTCCTGCTGAT
AATCCGGCCCCAACGCTGCTAGCTCCAACCACTTGACCGGTCTGTGCCGC
GTTCAGTCCAAGTCCCAAGTTCTGCTGTCCGCTTAATAGGGATCCACTGA
GCAGCGACTGCTGTCCGCCAACCTGTCCGCTCAGCAGAGATCCTTGGCTG
CCGCCCAACAGAGATCCACTCAGTAGAGCTGCGCTGTTACCGGTACTGGC
GGAGTTCAGGGAGCTGGCAGAGTTCAAAGAGCTAGCGGAGTTGAATCCAA
ACTGGGAGCCAGAGTTGAAGGCGGAGTTGTAGCCAGAGTTAAAGCCACCT
TGTGAGCCGGCGGCGTAGCCACTTCCAGCTTGCACCTGGTTGGCGGATGC
GGCTTGTAAGGCAGCCTGCTGACGGGCAGCTTGCTGGGTTTGGCTGAGCA
GCTGGCTCAGCTGGCTGTTCTGCTGGAAGTTCTGGCCATAAGAACTGCCA
AACTGAGAGTTAAAGGCGGCATTGCTGCCGAAGTT
BO15529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15825-PB | 1734 | CG15825-RB | 1015..1731 | 735..19 | 3585 | 100 | Minus |
CG15825-PA | 1698 | CG15825-RA | 979..1695 | 735..19 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-RD | 1916 | CG15825-RD | 1076..1792 | 735..19 | 3585 | 100 | Minus |
fon-RC | 1925 | CG15825-RC | 1085..1801 | 735..19 | 3585 | 100 | Minus |
fon-RA | 1991 | CG15825-RA | 1049..1765 | 735..19 | 3585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19383881..19384447 | 169..735 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 19383613..19383763 | 19..169 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:58:48 has no hits.
BO15529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:11 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15825-PA | 979..1698 | 15..735 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:55 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15825-PA | 979..1698 | 15..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:09 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RA | 1049..1776 | 7..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:22 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RA | 1049..1776 | 7..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:22 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19383602..19383762 | 7..168 | 97 | <- | Plus |
2L | 19383881..19384447 | 169..735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:09 Download gff for
BO15529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19383602..19383762 | 7..168 | 97 | <- | Plus |
arm_2L | 19383881..19384447 | 169..735 | 100 | | Plus |
BO15529.5prime Sequence
773 bp (651 high quality bases) assembled on 2006-05-30
> BO15529.5prime
GAAGTTATCAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGG
GTGTGGTCTGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGAC
AGTTTCCACTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGC
TCGCAAGAACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTG
GCGTCGATGGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTC
GAGAGCTCCTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTC
CGCTGGCGGATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTA
CGAACACCATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCC
TCCGGTTTTGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGC
TGGCTTTGGCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCT
CCTTCGGTAGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCC
TCCAACTTCGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTT
TGCTGATAACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACG
CCGTGGACTCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCC
GTCCCCACTTCCGAGTATTACAGGCACGAAAAGATTGTGTCCACCCCGCA
ACAGGTGGTCTACACCATTCCCG
BO15529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15825-PB | 1734 | CG15825-RB | 1..757 | 17..773 | 3760 | 99.8 | Plus |
CG15825-PA | 1698 | CG15825-RA | 62..721 | 114..773 | 3275 | 99.8 | Plus |
CG15825-PA | 1698 | CG15825-RA | 1..62 | 17..78 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-RC | 1925 | CG15825-RC | 71..827 | 17..773 | 3770 | 99.9 | Plus |
fon-RB | 2276 | CG15825-RB | 71..827 | 17..773 | 3770 | 99.9 | Plus |
fon-RD | 1916 | CG15825-RD | 71..818 | 17..773 | 3625 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19384705..19385364 | 773..114 | 3285 | 99.8 | Minus |
2L | 23513712 | 2L | 19386087..19386135 | 65..17 | 245 | 100 | Minus |
2L | 23513712 | 2L | 19384974..19385047 | 480..407 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19384998..19385071 | 504..431 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19385670..19385709 | 114..75 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:44:27 has no hits.
BO15529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:12 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15825-PB | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:57 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15825-PB | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:18 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..827 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:54 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..827 | 17..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:54 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19384705..19385363 | 115..773 | 99 | <- | Minus |
2L | 19385670..19385707 | 75..114 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:18 Download gff for
BO15529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19384705..19385363 | 115..773 | 99 | <- | Minus |
arm_2L | 19385670..19385707 | 75..114 | 95 | -> | Minus |
BO15529.complete Sequence
1765 bp assembled on 2009-08-24
GenBank Submission: KX794397
> BO15529.complete
GAAGTTATCAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGG
GTGTGGTCTGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGAC
AGTTTCCACTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGC
TCGCAAGAACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTG
GCGTCGATGGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTC
GAGAGCTCCTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTC
CGCTGGCGGATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTA
CGAACACCATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCC
TCCGGTTTTGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGC
TGGCTTTGGCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCT
CCTTCGGTAGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCC
TCCAACTTCGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTT
TGCTGATAACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACG
CCGTGGACTCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCC
GTCCCCACTTCCGAGTATTACAGGCACGAGAAGATTGTGTCCACCCCGCA
ACAGGTGGTCTACACCATTCCCGGTGGCTCCCAGCGTTACGTTCATCACG
AGGAACGTATCGTTGAACAGCCTACCCAGGTGACCCAGACGGTCCCAGTT
CAAACCGCACACTACTATCAACGAAAGGTGACCACCACTGCGTCCGCACC
ACAGCTGGTTCAGCCAGTTGCCAGCAGCCGTTTGACTTACGGATCGAATG
CCGCCTCCACCTTTGGCAGCAATGCTGCCTCCAACTTCGGCAGCAATGCC
GCCACCAACTTCGGCAGCAATGCCGCCACCAACTTCGGCAGCAATGCCGC
CTTTAACTCTCAGTTTGGCAGTTCTTATGGCCAGAACTTCCAGCAGAACA
GCCAGCTGAGCCAGCTGCTCAGCCAAACCCAGCAAGCTGCCCGTCAGCAG
GCTGCCTTACAAGCCGCATCCGCCAACCAGGTGCAAGCTGGAAGTGGCTA
CGCCGCCGGCTCACAAGGTGGCTTTAACTCTGGCTACAACTCCGCCTTCA
ACTCTGGCTCCCAGTTTGGATTCAACTCCGCTAGCTCTTTGAACTCTGCC
AGCTCCCTGAACTCCGCCAGTACCGGTAACAGCGCAGCTCTACTGAGTGG
ATCTCTGTTGGGCGGCAGCCAAGGATCTCTGCTGAGCGGACAGGTTGGCG
GACAGCAGTCGCTGCTCAGTGGATCCCTATTAAGCGGACAGCAGAACTTG
GGACTTGGACTGAACGCGGCACAGACCGGTCAAGTGGTTGGAGCTAGCAG
CGTTGGGGCCGGATTATCAGCAGGAGCCGGAAACTTGGGCAGTGGCTACC
GTACCAAGCAGTGGGAGAAGCAGTCCAAGTGGTCTTCCCAGAACTCGTAC
GATTCCAATGGCCATGTCAACAACTACAAGGATCTAGTCACCGGCGAGAG
CGAAAGTGTTGATATCAATGGCAAGCGGGCGGGATACCATGCGGTGACAG
CCTCCGTCGATGACAACGGCAAGATTGGCACCCACAGTGTTCACTCGGCA
AGCTTTCTAGACCAT
BO15529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-RC | 1734 | CG15825-PC | 1..1731 | 17..1747 | 8655 | 100 | Plus |
fon-RB | 1734 | CG15825-PB | 1..1731 | 17..1747 | 8655 | 100 | Plus |
fon-RD | 1725 | CG15825-PD | 1..1722 | 17..1747 | 8485 | 99.5 | Plus |
fon-RC | 1734 | CG15825-PC | 931..1011 | 971..1051 | 330 | 93.8 | Plus |
fon-RC | 1734 | CG15825-PC | 955..1035 | 947..1027 | 330 | 93.8 | Plus |
fon-RB | 1734 | CG15825-PB | 931..1011 | 971..1051 | 330 | 93.8 | Plus |
fon-RB | 1734 | CG15825-PB | 955..1035 | 947..1027 | 330 | 93.8 | Plus |
fon-RC | 1734 | CG15825-PC | 931..987 | 995..1051 | 210 | 91.2 | Plus |
fon-RC | 1734 | CG15825-PC | 979..1035 | 947..1003 | 210 | 91.2 | Plus |
fon-RB | 1734 | CG15825-PB | 931..987 | 995..1051 | 210 | 91.2 | Plus |
fon-RB | 1734 | CG15825-PB | 979..1035 | 947..1003 | 210 | 91.2 | Plus |
fon-RC | 1734 | CG15825-PC | 391..464 | 431..504 | 205 | 85.1 | Plus |
fon-RC | 1734 | CG15825-PC | 415..488 | 407..480 | 205 | 85.1 | Plus |
fon-RB | 1734 | CG15825-PB | 391..464 | 431..504 | 205 | 85.1 | Plus |
fon-RB | 1734 | CG15825-PB | 415..488 | 407..480 | 205 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-RC | 1925 | CG15825-RC | 71..1801 | 17..1747 | 8655 | 100 | Plus |
fon-RB | 2276 | CG15825-RB | 71..1801 | 17..1747 | 8655 | 100 | Plus |
fon-RD | 1916 | CG15825-RD | 71..1792 | 17..1747 | 8485 | 99.5 | Plus |
fon-RC | 1925 | CG15825-RC | 1001..1081 | 971..1051 | 330 | 93.8 | Plus |
fon-RC | 1925 | CG15825-RC | 1025..1105 | 947..1027 | 330 | 93.8 | Plus |
fon-RB | 2276 | CG15825-RB | 1001..1081 | 971..1051 | 330 | 93.8 | Plus |
fon-RB | 2276 | CG15825-RB | 1025..1105 | 947..1027 | 330 | 93.8 | Plus |
fon-RC | 1925 | CG15825-RC | 1001..1057 | 995..1051 | 210 | 91.2 | Plus |
fon-RC | 1925 | CG15825-RC | 1049..1105 | 947..1003 | 210 | 91.2 | Plus |
fon-RB | 2276 | CG15825-RB | 1001..1057 | 995..1051 | 210 | 91.2 | Plus |
fon-RB | 2276 | CG15825-RB | 1049..1105 | 947..1003 | 210 | 91.2 | Plus |
fon-RC | 1925 | CG15825-RC | 461..534 | 431..504 | 205 | 85.1 | Plus |
fon-RC | 1925 | CG15825-RC | 485..558 | 407..480 | 205 | 85.1 | Plus |
fon-RB | 2276 | CG15825-RB | 461..534 | 431..504 | 205 | 85.1 | Plus |
fon-RB | 2276 | CG15825-RB | 485..558 | 407..480 | 205 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19383881..19385364 | 1597..114 | 7420 | 100 | Minus |
2L | 23513712 | 2L | 19383613..19383763 | 1747..1597 | 755 | 100 | Minus |
2L | 23513712 | 2L | 19384427..19384507 | 1027..947 | 330 | 93.8 | Minus |
2L | 23513712 | 2L | 19384451..19384531 | 1051..971 | 330 | 93.8 | Minus |
2L | 23513712 | 2L | 19386087..19386135 | 65..17 | 245 | 100 | Minus |
2L | 23513712 | 2L | 19384427..19384483 | 1003..947 | 210 | 91.2 | Minus |
2L | 23513712 | 2L | 19384475..19384531 | 1051..995 | 210 | 91.2 | Minus |
2L | 23513712 | 2L | 19384974..19385047 | 480..407 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19384998..19385071 | 504..431 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19385670..19385709 | 114..75 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2461..2648 | 853..1044 | 118 | 56.7 | Plus |
BO15529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:01 Download gff for
BO15529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 68..1798 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:57 Download gff for
BO15529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..1801 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:20 Download gff for
BO15529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..1801 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:20 Download gff for
BO15529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19386087..19386135 | 17..65 | 100 | | Minus |
2L | 19383611..19383762 | 1598..1749 | 98 | <- | Minus |
2L | 19383881..19385363 | 115..1597 | 100 | <- | Minus |
2L | 19385670..19385714 | 66..114 | 89 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:57 Download gff for
BO15529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19383611..19383762 | 1598..1749 | 98 | <- | Minus |
arm_2L | 19383881..19385363 | 115..1597 | 100 | <- | Minus |
arm_2L | 19385670..19385714 | 66..114 | 89 | <- | Minus |
arm_2L | 19386087..19386135 | 17..65 | 100 | | Minus |
BO15529.pep Sequence
Translation from 16 to 1765
> BO15529.pep
MNKLLILALCLGVVCGDFQQSLGRTKRDSFHSRHYSTHGQAVEQARKNAG
YGGGYSGSFGAGVDGASAQVDDSALGKLESSYDSVGATESAEGASAGGLG
GAVETLGGSAGTNTIGAGVGSSFGSNFASGFGGQNAASFGAQNAAGFGAQ
NAASFGAQNAASFGSSFSSNAAFQTSSASNFGSTAAHQVGSNVEFADNAN
AGNKVDFGGVNAVDSSAQLLSGVQTVQSVPTSEYYRHEKIVSTPQQVVYT
IPGGSQRYVHHEERIVEQPTQVTQTVPVQTAHYYQRKVTTTASAPQLVQP
VASSRLTYGSNAASTFGSNAASNFGSNAATNFGSNAATNFGSNAAFNSQF
GSSYGQNFQQNSQLSQLLSQTQQAARQQAALQAASANQVQAGSGYAAGSQ
GGFNSGYNSAFNSGSQFGFNSASSLNSASSLNSASTGNSAALLSGSLLGG
SQGSLLSGQVGGQQSLLSGSLLSGQQNLGLGLNAAQTGQVVGASSVGAGL
SAGAGNLGSGYRTKQWEKQSKWSSQNSYDSNGHVNNYKDLVTGESESVDI
NGKRAGYHAVTASVDDNGKIGTHSVHSASFLDH
BO15529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-PC | 577 | CG15825-PC | 1..577 | 1..577 | 2908 | 100 | Plus |
fon-PB | 577 | CG15825-PB | 1..577 | 1..577 | 2908 | 100 | Plus |
fon-PD | 574 | CG15825-PD | 1..574 | 1..577 | 2875 | 99.5 | Plus |
fon-PA | 565 | CG15825-PA | 1..565 | 1..577 | 2822 | 97.9 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 537..1028 | 43..528 | 211 | 21.7 | Plus |