Clone BO15529 Report

Search the DGRC for BO15529

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptfon-RB
Protein status:BO15529.pep: Imported from assembly
Sequenced Size:1765

Clone Sequence Records

BO15529.3prime Sequence

735 bp (687 high quality bases) assembled on 2006-05-30

> BO15529.3prime
ATGGTCTAGAAAGCTTGCCGAGTGAACACTGTGGGTGCCAATCTTGCCGT
TGTCATCGACGGAGGCTGTCACCGCATGGTATCCCGCCCGCTTGCCATTG
ATATCAACACTTTCGCTCTCGCCGGTGACTAGATCCTTGTAGTTGTTGAC
ATGGCCATTGGAATCGTACGAGTTCTGGGAAGACCACTTGGACTGCTTCT
CCCACTGCTTGGTACGGTAGCCACTGCCCAAGTTTCCGGCTCCTGCTGAT
AATCCGGCCCCAACGCTGCTAGCTCCAACCACTTGACCGGTCTGTGCCGC
GTTCAGTCCAAGTCCCAAGTTCTGCTGTCCGCTTAATAGGGATCCACTGA
GCAGCGACTGCTGTCCGCCAACCTGTCCGCTCAGCAGAGATCCTTGGCTG
CCGCCCAACAGAGATCCACTCAGTAGAGCTGCGCTGTTACCGGTACTGGC
GGAGTTCAGGGAGCTGGCAGAGTTCAAAGAGCTAGCGGAGTTGAATCCAA
ACTGGGAGCCAGAGTTGAAGGCGGAGTTGTAGCCAGAGTTAAAGCCACCT
TGTGAGCCGGCGGCGTAGCCACTTCCAGCTTGCACCTGGTTGGCGGATGC
GGCTTGTAAGGCAGCCTGCTGACGGGCAGCTTGCTGGGTTTGGCTGAGCA
GCTGGCTCAGCTGGCTGTTCTGCTGGAAGTTCTGGCCATAAGAACTGCCA
AACTGAGAGTTAAAGGCGGCATTGCTGCCGAAGTT

BO15529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15825-PB 1734 CG15825-RB 1015..1731 735..19 3585 100 Minus
CG15825-PA 1698 CG15825-RA 979..1695 735..19 3585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RD 1916 CG15825-RD 1076..1792 735..19 3585 100 Minus
fon-RC 1925 CG15825-RC 1085..1801 735..19 3585 100 Minus
fon-RA 1991 CG15825-RA 1049..1765 735..19 3585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19383881..19384447 169..735 2835 100 Plus
2L 23513712 2L 19383613..19383763 19..169 755 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:58:48 has no hits.

BO15529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:11 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15825-PA 979..1698 15..735 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:55 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15825-PA 979..1698 15..735 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:09 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
fon-RA 1049..1776 7..735 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:22 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
fon-RA 1049..1776 7..735 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:22 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19383602..19383762 7..168 97 <- Plus
2L 19383881..19384447 169..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:09 Download gff for BO15529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19383602..19383762 7..168 97 <- Plus
arm_2L 19383881..19384447 169..735 100   Plus

BO15529.5prime Sequence

773 bp (651 high quality bases) assembled on 2006-05-30

> BO15529.5prime
GAAGTTATCAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGG
GTGTGGTCTGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGAC
AGTTTCCACTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGC
TCGCAAGAACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTG
GCGTCGATGGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTC
GAGAGCTCCTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTC
CGCTGGCGGATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTA
CGAACACCATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCC
TCCGGTTTTGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGC
TGGCTTTGGCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCT
CCTTCGGTAGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCC
TCCAACTTCGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTT
TGCTGATAACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACG
CCGTGGACTCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCC
GTCCCCACTTCCGAGTATTACAGGCACGAAAAGATTGTGTCCACCCCGCA
ACAGGTGGTCTACACCATTCCCG

BO15529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15825-PB 1734 CG15825-RB 1..757 17..773 3760 99.8 Plus
CG15825-PA 1698 CG15825-RA 62..721 114..773 3275 99.8 Plus
CG15825-PA 1698 CG15825-RA 1..62 17..78 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RC 1925 CG15825-RC 71..827 17..773 3770 99.9 Plus
fon-RB 2276 CG15825-RB 71..827 17..773 3770 99.9 Plus
fon-RD 1916 CG15825-RD 71..818 17..773 3625 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19384705..19385364 773..114 3285 99.8 Minus
2L 23513712 2L 19386087..19386135 65..17 245 100 Minus
2L 23513712 2L 19384974..19385047 480..407 205 85.1 Minus
2L 23513712 2L 19384998..19385071 504..431 205 85.1 Minus
2L 23513712 2L 19385670..19385709 114..75 200 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:44:27 has no hits.

BO15529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:12 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15825-PB 1..757 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:53:57 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15825-PB 1..757 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:18 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..827 17..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:54 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..827 17..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:54 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19384705..19385363 115..773 99 <- Minus
2L 19385670..19385707 75..114 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:18 Download gff for BO15529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19384705..19385363 115..773 99 <- Minus
arm_2L 19385670..19385707 75..114 95 -> Minus

BO15529.complete Sequence

1765 bp assembled on 2009-08-24

GenBank Submission: KX794397

> BO15529.complete
GAAGTTATCAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGG
GTGTGGTCTGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGAC
AGTTTCCACTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGC
TCGCAAGAACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTG
GCGTCGATGGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTC
GAGAGCTCCTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTC
CGCTGGCGGATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTA
CGAACACCATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCC
TCCGGTTTTGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGC
TGGCTTTGGCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCT
CCTTCGGTAGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCC
TCCAACTTCGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTT
TGCTGATAACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACG
CCGTGGACTCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCC
GTCCCCACTTCCGAGTATTACAGGCACGAGAAGATTGTGTCCACCCCGCA
ACAGGTGGTCTACACCATTCCCGGTGGCTCCCAGCGTTACGTTCATCACG
AGGAACGTATCGTTGAACAGCCTACCCAGGTGACCCAGACGGTCCCAGTT
CAAACCGCACACTACTATCAACGAAAGGTGACCACCACTGCGTCCGCACC
ACAGCTGGTTCAGCCAGTTGCCAGCAGCCGTTTGACTTACGGATCGAATG
CCGCCTCCACCTTTGGCAGCAATGCTGCCTCCAACTTCGGCAGCAATGCC
GCCACCAACTTCGGCAGCAATGCCGCCACCAACTTCGGCAGCAATGCCGC
CTTTAACTCTCAGTTTGGCAGTTCTTATGGCCAGAACTTCCAGCAGAACA
GCCAGCTGAGCCAGCTGCTCAGCCAAACCCAGCAAGCTGCCCGTCAGCAG
GCTGCCTTACAAGCCGCATCCGCCAACCAGGTGCAAGCTGGAAGTGGCTA
CGCCGCCGGCTCACAAGGTGGCTTTAACTCTGGCTACAACTCCGCCTTCA
ACTCTGGCTCCCAGTTTGGATTCAACTCCGCTAGCTCTTTGAACTCTGCC
AGCTCCCTGAACTCCGCCAGTACCGGTAACAGCGCAGCTCTACTGAGTGG
ATCTCTGTTGGGCGGCAGCCAAGGATCTCTGCTGAGCGGACAGGTTGGCG
GACAGCAGTCGCTGCTCAGTGGATCCCTATTAAGCGGACAGCAGAACTTG
GGACTTGGACTGAACGCGGCACAGACCGGTCAAGTGGTTGGAGCTAGCAG
CGTTGGGGCCGGATTATCAGCAGGAGCCGGAAACTTGGGCAGTGGCTACC
GTACCAAGCAGTGGGAGAAGCAGTCCAAGTGGTCTTCCCAGAACTCGTAC
GATTCCAATGGCCATGTCAACAACTACAAGGATCTAGTCACCGGCGAGAG
CGAAAGTGTTGATATCAATGGCAAGCGGGCGGGATACCATGCGGTGACAG
CCTCCGTCGATGACAACGGCAAGATTGGCACCCACAGTGTTCACTCGGCA
AGCTTTCTAGACCAT

BO15529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RC 1734 CG15825-PC 1..1731 17..1747 8655 100 Plus
fon-RB 1734 CG15825-PB 1..1731 17..1747 8655 100 Plus
fon-RD 1725 CG15825-PD 1..1722 17..1747 8485 99.5 Plus
fon-RC 1734 CG15825-PC 931..1011 971..1051 330 93.8 Plus
fon-RC 1734 CG15825-PC 955..1035 947..1027 330 93.8 Plus
fon-RB 1734 CG15825-PB 931..1011 971..1051 330 93.8 Plus
fon-RB 1734 CG15825-PB 955..1035 947..1027 330 93.8 Plus
fon-RC 1734 CG15825-PC 931..987 995..1051 210 91.2 Plus
fon-RC 1734 CG15825-PC 979..1035 947..1003 210 91.2 Plus
fon-RB 1734 CG15825-PB 931..987 995..1051 210 91.2 Plus
fon-RB 1734 CG15825-PB 979..1035 947..1003 210 91.2 Plus
fon-RC 1734 CG15825-PC 391..464 431..504 205 85.1 Plus
fon-RC 1734 CG15825-PC 415..488 407..480 205 85.1 Plus
fon-RB 1734 CG15825-PB 391..464 431..504 205 85.1 Plus
fon-RB 1734 CG15825-PB 415..488 407..480 205 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RC 1925 CG15825-RC 71..1801 17..1747 8655 100 Plus
fon-RB 2276 CG15825-RB 71..1801 17..1747 8655 100 Plus
fon-RD 1916 CG15825-RD 71..1792 17..1747 8485 99.5 Plus
fon-RC 1925 CG15825-RC 1001..1081 971..1051 330 93.8 Plus
fon-RC 1925 CG15825-RC 1025..1105 947..1027 330 93.8 Plus
fon-RB 2276 CG15825-RB 1001..1081 971..1051 330 93.8 Plus
fon-RB 2276 CG15825-RB 1025..1105 947..1027 330 93.8 Plus
fon-RC 1925 CG15825-RC 1001..1057 995..1051 210 91.2 Plus
fon-RC 1925 CG15825-RC 1049..1105 947..1003 210 91.2 Plus
fon-RB 2276 CG15825-RB 1001..1057 995..1051 210 91.2 Plus
fon-RB 2276 CG15825-RB 1049..1105 947..1003 210 91.2 Plus
fon-RC 1925 CG15825-RC 461..534 431..504 205 85.1 Plus
fon-RC 1925 CG15825-RC 485..558 407..480 205 85.1 Plus
fon-RB 2276 CG15825-RB 461..534 431..504 205 85.1 Plus
fon-RB 2276 CG15825-RB 485..558 407..480 205 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19383881..19385364 1597..114 7420 100 Minus
2L 23513712 2L 19383613..19383763 1747..1597 755 100 Minus
2L 23513712 2L 19384427..19384507 1027..947 330 93.8 Minus
2L 23513712 2L 19384451..19384531 1051..971 330 93.8 Minus
2L 23513712 2L 19386087..19386135 65..17 245 100 Minus
2L 23513712 2L 19384427..19384483 1003..947 210 91.2 Minus
2L 23513712 2L 19384475..19384531 1051..995 210 91.2 Minus
2L 23513712 2L 19384974..19385047 480..407 205 85.1 Minus
2L 23513712 2L 19384998..19385071 504..431 205 85.1 Minus
2L 23513712 2L 19385670..19385709 114..75 200 100 Minus
Blast to na_te.dros performed 2014-11-28 01:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2461..2648 853..1044 118 56.7 Plus

BO15529.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:01 Download gff for BO15529.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 68..1798 17..1749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:57 Download gff for BO15529.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..1801 17..1749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:20 Download gff for BO15529.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..1801 17..1749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:20 Download gff for BO15529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19386087..19386135 17..65 100   Minus
2L 19383611..19383762 1598..1749 98 <- Minus
2L 19383881..19385363 115..1597 100 <- Minus
2L 19385670..19385714 66..114 89 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:57 Download gff for BO15529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19383611..19383762 1598..1749 98 <- Minus
arm_2L 19383881..19385363 115..1597 100 <- Minus
arm_2L 19385670..19385714 66..114 89 <- Minus
arm_2L 19386087..19386135 17..65 100   Minus

BO15529.pep Sequence

Translation from 16 to 1765

> BO15529.pep
MNKLLILALCLGVVCGDFQQSLGRTKRDSFHSRHYSTHGQAVEQARKNAG
YGGGYSGSFGAGVDGASAQVDDSALGKLESSYDSVGATESAEGASAGGLG
GAVETLGGSAGTNTIGAGVGSSFGSNFASGFGGQNAASFGAQNAAGFGAQ
NAASFGAQNAASFGSSFSSNAAFQTSSASNFGSTAAHQVGSNVEFADNAN
AGNKVDFGGVNAVDSSAQLLSGVQTVQSVPTSEYYRHEKIVSTPQQVVYT
IPGGSQRYVHHEERIVEQPTQVTQTVPVQTAHYYQRKVTTTASAPQLVQP
VASSRLTYGSNAASTFGSNAASNFGSNAATNFGSNAATNFGSNAAFNSQF
GSSYGQNFQQNSQLSQLLSQTQQAARQQAALQAASANQVQAGSGYAAGSQ
GGFNSGYNSAFNSGSQFGFNSASSLNSASSLNSASTGNSAALLSGSLLGG
SQGSLLSGQVGGQQSLLSGSLLSGQQNLGLGLNAAQTGQVVGASSVGAGL
SAGAGNLGSGYRTKQWEKQSKWSSQNSYDSNGHVNNYKDLVTGESESVDI
NGKRAGYHAVTASVDDNGKIGTHSVHSASFLDH

BO15529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
fon-PC 577 CG15825-PC 1..577 1..577 2908 100 Plus
fon-PB 577 CG15825-PB 1..577 1..577 2908 100 Plus
fon-PD 574 CG15825-PD 1..574 1..577 2875 99.5 Plus
fon-PA 565 CG15825-PA 1..565 1..577 2822 97.9 Plus
Mur89F-PC 2158 CG4090-PC 537..1028 43..528 211 21.7 Plus