Clone BO15536 Report

Search the DGRC for BO15536

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG7945-RC
Protein status:BO15536.pep: full length peptide match
Sequenced Size:460

Clone Sequence Records

BO15536.3prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-30

> BO15536.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATGTCGAC
TGATAACT

BO15536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 319..744 444..19 2130 100 Minus
CG7945-PA 789 CG7945-RA 361..786 444..19 2130 100 Minus
CG7945-PC 429 CG7945-RC 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1340 444..19 2130 100 Minus
CG7945-RB 1275 CG7945-RB 739..1164 444..19 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 19..394 1880 100 Plus
3L 28110227 3L 15522360..15522411 393..444 260 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:38:48 has no hits.

BO15536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:23 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 319..747 15..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:14 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PC 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:03 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1169 11..444 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:10 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1169 11..444 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:10 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 11..392 98 <- Plus
3L 15522360..15522411 393..444 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:03 Download gff for BO15536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514917..15515295 11..392 98 <- Plus
arm_3L 15515460..15515511 393..444 100   Plus

BO15536.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-30

> BO15536.5prime
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGCTT
TCTAGACC

BO15536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 319..744 17..442 2130 100 Plus
CG7945-PA 789 CG7945-RA 361..786 17..442 2130 100 Plus
CG7945-PC 429 CG7945-RC 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1340 17..442 2130 100 Plus
CG7945-RB 1275 CG7945-RB 739..1164 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 442..67 1880 100 Minus
3L 28110227 3L 15522360..15522411 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:53:23 has no hits.

BO15536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:25 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 319..747 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:15 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PC 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:45 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1169 17..450 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:06 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1169 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:06 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 69..450 98 <- Minus
3L 15522360..15522417 16..68 91 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:45 Download gff for BO15536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15515460..15515517 16..68 91 -> Minus
arm_3L 15514917..15515295 69..450 98 <- Minus

BO15536.complete Sequence

460 bp (460 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633503

> BO15536.complete
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGCTT
TCTAGACCAT

BO15536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 789 CG7945-PA 361..786 17..442 2130 100 Plus
CG7945-RB 747 CG7945-PB 319..744 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1340 17..442 2130 100 Plus
CG7945-RB 1275 CG7945-RB 739..1164 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 442..67 1880 100 Minus
3L 28110227 3L 15522360..15522411 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:38:31 has no hits.

BO15536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:17 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 361..789 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:22 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1691..2121 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:44 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1164 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:17 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1691..2121 17..450 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:45 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1164 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:45 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15522360..15522411 17..68 100   Minus
3L 15521820..15522195 69..444 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:44 Download gff for BO15536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514920..15515295 69..444 99 <- Minus
arm_3L 15515460..15515511 17..68 100   Minus

BO15536.pep Sequence

Translation from 16 to 460

> BO15536.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSHASFLDH

BO15536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 107..248 1..142 717 100 Plus
CG7945-PA 262 CG7945-PA 121..262 1..142 717 100 Plus