Clone Sequence Records
BO15536.3prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-30
> BO15536.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATGTCGAC
TGATAACT
BO15536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 319..744 | 444..19 | 2130 | 100 | Minus |
CG7945-PA | 789 | CG7945-RA | 361..786 | 444..19 | 2130 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1340 | 444..19 | 2130 | 100 | Minus |
CG7945-RB | 1275 | CG7945-RB | 739..1164 | 444..19 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 19..394 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522411 | 393..444 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:38:48 has no hits.
BO15536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:23 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 319..747 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:14 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PC | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:03 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1169 | 11..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:10 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1169 | 11..444 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:10 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521817..15522195 | 11..392 | 98 | <- | Plus |
3L | 15522360..15522411 | 393..444 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:03 Download gff for
BO15536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514917..15515295 | 11..392 | 98 | <- | Plus |
arm_3L | 15515460..15515511 | 393..444 | 100 | | Plus |
BO15536.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-30
> BO15536.5prime
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGCTT
TCTAGACC
BO15536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 319..744 | 17..442 | 2130 | 100 | Plus |
CG7945-PA | 789 | CG7945-RA | 361..786 | 17..442 | 2130 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1340 | 17..442 | 2130 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 739..1164 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 442..67 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522411 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:53:23 has no hits.
BO15536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:25 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 319..747 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:15 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PC | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:45 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1169 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:06 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1169 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:06 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521817..15522195 | 69..450 | 98 | <- | Minus |
3L | 15522360..15522417 | 16..68 | 91 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:45 Download gff for
BO15536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15515460..15515517 | 16..68 | 91 | -> | Minus |
arm_3L | 15514917..15515295 | 69..450 | 98 | <- | Minus |
BO15536.complete Sequence
460 bp (460 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633503
> BO15536.complete
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGCTT
TCTAGACCAT
BO15536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 789 | CG7945-PA | 361..786 | 17..442 | 2130 | 100 | Plus |
CG7945-RB | 747 | CG7945-PB | 319..744 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1340 | 17..442 | 2130 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 739..1164 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 442..67 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522411 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:31 has no hits.
BO15536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:17 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 361..789 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:22 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1691..2121 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:44 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1164 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:17 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1691..2121 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:45 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1164 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:45 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15522360..15522411 | 17..68 | 100 | | Minus |
3L | 15521820..15522195 | 69..444 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:44 Download gff for
BO15536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514920..15515295 | 69..444 | 99 | <- | Minus |
arm_3L | 15515460..15515511 | 17..68 | 100 | | Minus |
BO15536.pep Sequence
Translation from 16 to 460
> BO15536.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSHASFLDH
BO15536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 107..248 | 1..142 | 717 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 121..262 | 1..142 | 717 | 100 | Plus |