Clone Sequence Records
BO15542.3prime Sequence
842 bp (730 high quality bases) assembled on 2006-05-30
> BO15542.3prime
ATGGTCTAGAAAGCTTGCTTGCAGCACAGCCGCATTGGCCACCACGCTAG
GATTGTTGACCACCTCGCCGAGCGAATCGAGAACCTCCTTTCTGTAGTCA
TCGAACTCTCCAACAATCTCGTTGATCGTCTGATCCTCAATTACGTAGAG
AGTGCAACCTGTTTCACGGATCAAACGCTCGTCGTGGGAGACGATGATCA
CGCCACCCTCGTACTCGTTGATTGCCTCCGCCAAGGCGTCGATACTCTCG
ATGTCCAGATTGTTCGTAGGCTCATCGAGAATTAGTACATCCGGCGCACT
CAAGCATAGCTCAGCGAGGGCCACACGGGCTTTCTGACCACCGGACAGAT
CCTTCATCTTGATGGTGTGTGCATGACTGACCAAACCAAAGGAACCCAAT
GCCTTACGCGCCTTTTCGTGGGGCAGATTGAACAGACGCTGCAGGTACTC
TGCAGCCGATTCCTCTGCCGTGAGATGTTCACCTGAGTGCTGATCGAAGC
GGCCCACATGAAGTCGGTGATTCTTGCGCTGCTCACCCTCCTGCGGTTCC
AATTCACCGAGCAGCAGCTTGAGGAAGGTTGATTTGCCCACACCATTGGG
TCCCACGATGGCCACTCGACTAGTTAGATCAATGCCAAAGTCAACCTTGA
TGAACAGCGGTTTCTGGCTCGGAAAGGCGAAGGTGACATTGTGGACACCC
AGAATGGGTGGCTGGAGCTGCGATGGCTCCGGGAAGCGGAACTTGACAAT
ATATTCCTTGGGGCTGGCCAACAGCTCCTGAGGTCCCTCATCCTCGTCCT
GTTTCTGCTGCTTAGACTTGTTCTTCTCCTGCTTGCGTGTGA
BO15542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-PA | 2706 | CG1703-RA | 1880..2703 | 842..19 | 4095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-RB | 3059 | CG1703-RB | 2060..2883 | 842..19 | 4105 | 99.9 | Minus |
| CG1703-RA | 2970 | CG1703-RA | 1971..2794 | 842..19 | 4105 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11614129..11614952 | 842..19 | 4105 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:07:19 has no hits.
BO15542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:29 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-PA | 1881..2706 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:22 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-PA | 1881..2706 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:48:25 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 1972..2797 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:31 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 1972..2797 | 15..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:31 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11614130..11614955 | 15..841 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:48:25 Download gff for
BO15542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11508163..11508988 | 15..841 | 99 | | Minus |
BO15542.5prime Sequence
833 bp (713 high quality bases) assembled on 2006-05-30
> BO15542.5prime
GAAGTTATCAGTCGACATGTCCAAGGCCAAGGGTAAGAAGAAGGAGCGCT
TTGATGACGACGAGGAGCAGCTGGAGAAAGTGCAGGAGAAGAAGCCACCG
ACAAGCAAGAAGGGTGGTAAGAAGGGAAAGCGAGGAGGTGGCGGCGGCGA
CTCCAGCGACGAGGATGTCACGACCAGGAATCGGGACAACGAGGATCTGG
AGAGCATAGCCTCATCGAATCAGAGCAAACAGCAGACTGCCGGCAAAAAG
CAGGCCAAGAAGGGTAAAAAGGGCAAGAGGAATAATGACTGGAGCGACGA
GGATGAGAAGCCAGAGAAGAGTTTGCCTGCCAACGACTTGGACGATGAAG
ATGACGACGAGGCGCCTCTGGCATCCAAGCCAGCTGCTAAAAAGCCACAG
CCCAGCAAAAAGAACAAGAAGAACAAGAAGAAGAACGACGATTTCTCGGA
CGAAGATAAACCGGAGCTGGACTTGGACGACCTGGACAATGAGGAGGATG
AGGTGGAAGTGGTTGCTGTCAAGCCAGCCTCCAAGAAGTCCAAGAAGAAG
CAGCAGGCTCAGCAAAAGAACATGTTCGCCATGAGCGATGATGAGGAGGA
TGAGGTTGCCGATGATCTGCCAAATGACAGCGAAGAGGAGGAGAAGGAAC
AGCTGTCCAACAAGGCGGCCAAGGAGTCAAAAAAGGAACAGCAGAAGCAG
CCCGAAAAGGAAGTGGAGGAGCAGAAAGTGGAGCAAGTCCTTAGCGAAAA
AGTGGCGGCAGTAAGTCTCAGGGAAAAGACACCTGAGCCGGTACCCAAGG
CCGAGCCCGAACCCGAGTCTGACCCCAACCCGA
BO15542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-PA | 2706 | CG1703-RA | 1..806 | 17..822 | 4005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-RB | 3059 | CG1703-RB | 179..998 | 15..833 | 4060 | 99.8 | Plus |
| CG1703-RA | 2970 | CG1703-RA | 90..909 | 15..833 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11612175..11612995 | 14..833 | 4040 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 21:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1135 | 658..736 | 116 | 60.8 | Plus |
BO15542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:30 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-PA | 1..817 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:23 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-PA | 1..817 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:27 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 80..908 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:25 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 80..908 | 7..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:25 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11612170..11612994 | 8..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:27 Download gff for
BO15542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11506203..11507027 | 8..832 | 99 | | Plus |
BO15542.complete Sequence
2737 bp assembled on 2008-08-14
GenBank Submission: FJ633504
> BO15542.complete
GAAGTTATCAGTCGACATGTCCAAGGCCAAGGGTAAGAAGAAGGAGCGCT
TTGATGACGACGAGGAGCAGCTGGAGAAAGTGCAGGAGAAGAAGCCACCG
ACAAGCAAGAAGGGTGGTAAGAAGGGAAAGCGAGGAGGTGGCGGCGGCGA
CTCCAGCGACGAGGATGTCACGACCAGGAATCGGGACAACGAGGATCTGG
AGAGCATAGCCTCATCGAATCAGAGCAAACAGCAGACTGCCGGCAAAAAG
CAGGCCAAGAAGGGTAAAAAGGGCAAGAGGAATAATGACTGGAGCGACGA
GGATGAGAAGCCAGAGAAGAGTTTGCCTGCCAACGACTTGGACGATGAAG
ATGACGACGAGGCGCCTCTGGCATCCAAGCCAGCTGCTAAAAAGCCACAG
CCCAGCAAAAAGAACAAGAAGAACAAGAAGAAGAACGACGATTTCTCGGA
CGAAGATAAACCGGAGCTGGACTTGGACGACCTGGACAATGAGGAGGATG
AGGTGGAAGTGGTTGCTGTCAAGCCAGCCTCCAAGAAGTCCAAGAAGAAG
CAGCAGGCTCAGCAAAAGAACATGTTCGCCATGAGCGATGATGAGGAGGA
TGAGGTTGCCGATGATCTGCCAAATGACAGCGAAGAGGAGGAGAAGGAAC
AGCTGTCCAACAAGGCGGCCAAGGAGTCAAAAAAGGAACAGCAGAAGCAG
CCCGAAAAGGAAGTGGAGGAGCAGAAAGTGGAGCAAGTCCTTAGCGAAAA
AGTGGCGGCAGTAAGTCTCAAGGAAAAGACACCTGAGCCGGTACCCAAGG
CCGAGCCCGAACCCGAGTCTGAACCCCAACCCGACGAGGAAGCCGATGCT
GAGGTAGATTCCAAGTTCGAGGAGAGCAAGGAAGCCAAGGAGAAGAAACT
CACTCACAAGGAGAAAAAGAAGCAAAAGAAGCAGCAGGAGTACGAACGCC
AAATGGAGCTGATGACAAAGAAGGGTGGTGCCGGTCACTCGGACTTGGAC
AACAATTTCACCATGTCGCAGGTGCAGAAGAGCGCTGGTCAAAAGGCGGC
TCTGGAGCAAGCCGTGGATATCAAGATCGAGAATTTCACCATCTCAGCCA
AGGGTAACGATCTATTTGTGAACGCCAACCTATTGATTGCACATGGACGC
CGTTATGGTTTGGTGGGTCCCAACGGGCACGGCAAGACCACCCTGCTCCG
GCATATTGCCACCCGTGCCTTTGCCATACCGCCCAATATCGATGTGCTGC
TTTGCGAACAGGAAGTCGTAGCTACCGATAAAACGGCCATCAATACAATC
TTGGAAGCTGATGTGCGTCGCACAGAGATGCTAAAGAAGGCCGATGAACT
GGAGAAACAGTTTGTCGCTGGCGATTTGACGGTGCAGGAGGAGCTAAACG
ATACCTTCGCGGAACTGAAAGCCATTGGAGCCTACTCGGCGGAAGCCAGG
GCACGAAGAATCCTTGCCGGTTTGGGTTTCAGCAAAGAGATGCAGGACAG
GCCGACGAACAAATTCTCCGGAGGCTGGCGCATGAGAGTGTCCCTAGCAA
GAGCTCTCTATCTGGAGCCCACGTTGCTTATGCTCGACGAACCGACCAAT
CATTTGGATCTTAATGCTGTCATTTGGCTGGACAACTATCTGCAGGGCTG
GAAGAAGACCCTGTTGATCGTGTCCCACGACCAGAGTTTCTTGGACAACG
TCTGCAACGAGATCATACATTTGGATCAAAAGAAACTGCAATACTACAAG
GGCAACTATTCCATGTTCAAGAAGATGTATGTGCAGAAACGCCGCGAGAT
GATCAAGGAGTACGAGAAGCAGGAGAAGCGCCTGCGCGAGCTGAAGGCCC
ACGGTCAGTCGAAGAAGGCAGCGGAAAAGAAGCAGAAGGAATCGCTCACA
CGCAAGCAGGAGAAGAACAAGTCTAAGCAGCAGAAACAGGACGAGGATGA
GGGACCTCAGGAGCTGTTGGCCAGGCCCAAGGAATATATTGTCAAGTTCC
GCTTCCCGGAGCCATCGCAGCTCCAGCCACCCATTCTGGGTGTCCACAAT
GTCACCTTCGCCTTTCCGAGCCAGAAACCGCTGTTCATCAAGGTTGACTT
TGGCATTGATCTAACTAGTCGAGTGGCCATCGTGGGACCCAATGGTGTGG
GCAAATCAACCTTCCTCAAGCTGCTGCTCGGTGAATTGGAACCGCAGGAG
GGTGAGCAGCGCAAGAATCACCGACTTCATGTGGGCCGCTTCGATCAGCA
CTCAGGTGAACATCTCACGGCAGAGGAATCGGCTGCAGAGTACCTGCAGC
GTCTGTTCAATCTGCCCCACGAAAAGGCGCGTAAGGCATTGGGTTCCTTT
GGTTTGGTCAGTCATGCACACACCATCAAGATGAAGGATCTGTCCGGTGG
TCAGAAAGCCCGTGTGGCCCTCGCTGAGCTATGCTTGAGTGCGCCGGATG
TACTAATTCTCGATGAGCCTACGAACAATCTGGACATCGAGAGTATCGAC
GCCTTGGCGGAGGCAATCAACGAGTACGAGGGTGGCGTGATCATCGTCTC
CCACGACGAGCGTTTGATCCGTGAAACAGGTTGCACTCTCTACGTAATTG
AGGATCAGACGATCAACGAGATTGTTGGAGAGTTCGATGACTACAGAAAG
GAGGTTCTCGATTCGCTCGGCGAGGTGGTCAACAATCCTAGCGTGGTGGC
CAATGCGGCTGTGCTGCAAGCAAGCTTTCTAGACCAT
BO15542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-RB | 2706 | CG1703-PB | 1..2703 | 17..2719 | 13515 | 100 | Plus |
| CG1703-RA | 2706 | CG1703-PA | 1..2703 | 17..2719 | 13515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-RB | 3059 | CG1703-RB | 179..2883 | 15..2719 | 13525 | 100 | Plus |
| CG1703-RA | 2970 | CG1703-RA | 90..2794 | 15..2719 | 13525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11613336..11614952 | 1103..2719 | 8085 | 100 | Plus |
| X | 23542271 | X | 11612175..11613266 | 14..1105 | 5460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1179 | 658..777 | 120 | 58.5 | Plus |
BO15542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:29 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 79..2796 | 7..2723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:51 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 92..2794 | 17..2721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:03 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 91..2793 | 17..2721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:18 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 92..2794 | 17..2721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:18 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11612178..11613264 | 17..1103 | 100 | -> | Plus |
| X | 11613337..11614952 | 1104..2721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:51 Download gff for
BO15542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11506211..11507297 | 17..1103 | 100 | -> | Plus |
| arm_X | 11507370..11508985 | 1104..2721 | 99 | | Plus |
BO15542.pep Sequence
Translation from 16 to 2737
> BO15542.pep
MSKAKGKKKERFDDDEEQLEKVQEKKPPTSKKGGKKGKRGGGGGDSSDED
VTTRNRDNEDLESIASSNQSKQQTAGKKQAKKGKKGKRNNDWSDEDEKPE
KSLPANDLDDEDDDEAPLASKPAAKKPQPSKKNKKNKKKNDDFSDEDKPE
LDLDDLDNEEDEVEVVAVKPASKKSKKKQQAQQKNMFAMSDDEEDEVADD
LPNDSEEEEKEQLSNKAAKESKKEQQKQPEKEVEEQKVEQVLSEKVAAVS
LKEKTPEPVPKAEPEPESEPQPDEEADAEVDSKFEESKEAKEKKLTHKEK
KKQKKQQEYERQMELMTKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQAV
DIKIENFTISAKGNDLFVNANLLIAHGRRYGLVGPNGHGKTTLLRHIATR
AFAIPPNIDVLLCEQEVVATDKTAINTILEADVRRTEMLKKADELEKQFV
AGDLTVQEELNDTFAELKAIGAYSAEARARRILAGLGFSKEMQDRPTNKF
SGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLL
IVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYE
KQEKRLRELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQEL
LARPKEYIVKFRFPEPSQLQPPILGVHNVTFAFPSQKPLFIKVDFGIDLT
SRVAIVGPNGVGKSTFLKLLLGELEPQEGEQRKNHRLHVGRFDQHSGEHL
TAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARV
ALAELCLSAPDVLILDEPTNNLDIESIDALAEAINEYEGGVIIVSHDERL
IRETGCTLYVIEDQTINEIVGEFDDYRKEVLDSLGEVVNNPSVVANAAVL
QASFLDH
BO15542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-PB | 901 | CG1703-PB | 1..901 | 1..901 | 4605 | 100 | Plus |
| CG1703-PA | 901 | CG1703-PA | 1..901 | 1..901 | 4605 | 100 | Plus |
| CG9330-PA | 708 | CG9330-PA | 97..700 | 274..880 | 1166 | 42.9 | Plus |
| CG9281-PD | 611 | CG9281-PD | 2..599 | 287..884 | 1059 | 37.1 | Plus |
| CG9281-PC | 611 | CG9281-PC | 2..599 | 287..884 | 1059 | 37.1 | Plus |
