Clone Sequence Records
BO15554.3prime Sequence
830 bp (740 high quality bases) assembled on 2006-05-30
> BO15554.3prime
ATGGTCTAGAAAGCTTGCCACCTGCAGGTGTATCAGTTCTTTCTTGGAGA
GAACGGTGATCAGATTGTTTGCCGTGGTTATGCCCAGAATCTCGTCAATC
TCGTTGCCCAAGGTGATGAGCTTTTGTTTACCCAAGGTGACGGGAGGTCC
GTTTCGCCTGCGGAGACCATCAGCCGAATTATTAGCCGGAAAGTAGACGA
GAACGTAGCGTACAGGGTCACATATGGCTACGTAATCCAGATCCGGACTG
CAGACGGTGAATTTCCGCACAACCTTGGAGGCCTGCACGTAGCCGAAGGC
GTGCAGCTGGCCCTCGTGGCGGACACTCCATTCATCTGGACGACTGGGCT
GGTACATCTGTAGCCATATGGAGGCGTCGACGCCCTGGCGGGTAGCAAAG
GCGGCTGGAAAGCCAGGACGCAGCGTGGTGGTGAGCACCAGTGGCGGGGG
ACCAAGAAAAATAGTGTGGGTGATGCACCCGCTGGTCAAATTGAAGCGTA
CCATCTTCATTTCTTCATCAGCGGATATTAAGTCACATTCTTCAACGGGA
TCCTGCAGACTTGGAATGGGCAGTGGTGGAGCTTCCATTGGATGTACTTC
CTCCGCTACGTCATCTTTCTTCTGCGCGAACAAACGTGGCCAGTTCTGAA
TCTCCGCCTTGGTTAGTGACAATTCTAGGCCATTCTCAGCCAACTTAAAT
GCACTTAAATCATCTCCCACACTGGCGTATAACTCTTCGTCGAATATAAC
CTCATCCAGATGCTTTACAACGACAGTGGTTTTTAGAACCGCTCACGTTA
AACTCTTTTACGGATGCAGTTGAAGGAACA
BO15554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PB | 1743 | CG10347-RB | 976..1740 | 783..19 | 3825 | 100 | Minus |
| CG10347-PA | 1743 | CG10347-RA | 976..1740 | 783..19 | 3825 | 100 | Minus |
| CG10347-PB | 1743 | CG10347-RB | 930..979 | 830..781 | 200 | 96 | Minus |
| CG10347-PA | 1743 | CG10347-RA | 930..979 | 830..781 | 200 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 1043..1853 | 830..19 | 4005 | 99.6 | Minus |
| CG10347-RB | 2024 | CG10347-RB | 1046..1856 | 830..19 | 4005 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11852860..11853342 | 19..501 | 2415 | 100 | Plus |
| X | 23542271 | X | 11853401..11853729 | 501..830 | 1570 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:21:08 has no hits.
BO15554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:51 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 931..1743 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:50 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 931..1743 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:47:12 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 1047..1856 | 19..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:54 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 1047..1856 | 19..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:54 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11852860..11853341 | 19..500 | 100 | <- | Plus |
| X | 11853401..11853728 | 501..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:47:12 Download gff for
BO15554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11746893..11747374 | 19..500 | 100 | <- | Plus |
| arm_X | 11747434..11747761 | 501..829 | 99 | | Plus |
BO15554.5prime Sequence
797 bp (754 high quality bases) assembled on 2006-05-30
> BO15554.5prime
GAAGTTATCAGTCGACATGCCGGTGGTGGAACTGAAAGTGGATCGCAACC
TGGTGTGCTCGGACTTTTCTGGCTACAAATTGGCATTCGATTCGGTGCCT
GTTCTTCGCCAGGAACTTGGATGTGATGCCTACGTGCTGGATCCGAGCAG
CAATCAGTTCTCGCTGCTGCACACGGAGCTCTTTGCCCGACACAATCACC
TGGTAGCCGATCCATGGATGCGCCACTGCAGCTACTTCTTTAACAAGCGC
CACCAGCTGGTGCAGTGCAACTACGATCTACAGACTGGACGCGCACGTGC
CCAGCGCGTTGTCCTCACGGTGGACTATAGGGATCAGGGCGATGGGGAAC
TACATCGGTCGGGTGACTACAACTACACCATAGTTTTCGTTTCGGAACGA
TTCTGTGTGATCTGCGACGGTATAACCAGTTACCATCTGGTGGACACCGG
CGACAGAACGCGCACCGATGTGCAGGAGTGGCAACGGATTACACGCTCGC
CGGTGAATAATAACAGTGGTCATCGCGGCTTTGCACTCTTCGATGCCCGG
CTGGATGTGCTGCAGGAACGTAAGCAGATCTCGCTGGTGGCCGGTCATGT
GGCACGCCGTGATGCAGTTGGCCAAGATCAGACGCACGTCTATTACATGG
ACTTGACCTGGGCACGGTGGACTCATTCGCCCACCAATGACGAGTGGTCA
TATAATATCTGTCAACGGCTGGAGACCACTGGCTCTGTGCACTACTGCGC
CTTTGAGCCTCGCGCCGAGTCCCTAGTCATTGCCAGCAACCGCGATG
BO15554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PB | 1743 | CG10347-RB | 1..781 | 17..797 | 3905 | 100 | Plus |
| CG10347-PA | 1743 | CG10347-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 114..894 | 17..797 | 3905 | 100 | Plus |
| CG10347-RB | 2024 | CG10347-RB | 117..897 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11853878..11854658 | 797..17 | 3905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:41:40 has no hits.
BO15554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:51 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:52 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:34 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 108..897 | 6..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:20 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 108..897 | 6..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:20 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11853878..11854667 | 6..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:34 Download gff for
BO15554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11747911..11748700 | 6..797 | 99 | | Minus |
BO15554.complete Sequence
1774 bp assembled on 2008-11-10
GenBank Submission: KX794855
> BO15554.complete
GAAGTTATCAGTCGACATGCCGGTGGTGGAACTGAAAGTGGATCGCAACC
TGGTGTGCTCGGACTTTTCTGGCTACAAATTGGCATTCGATTCGGTGCCT
GTTCTTCGCCAGGAACTTGGATGTGATGCCTACGTGCTGGATCCGAGCAG
CAATCAGTTCTCGCTGCTGCACACGGAGCTCTTTGCCCGACACAATCACC
TGGTAGCCGATCCATGGATGCGCCACTGCAGCTACTTCTTTAACAAGCGC
CACCAGCTGGTGCAGTGCAACTACGATCTACAGACTGGACGCGCACGTGC
CCAGCGCGTTGTCCTCACGGTGGACTATAGGGATCAGGGCGATGGGGAAC
TACATCGGTCGGGTGACTACAACTACACCATAGTTTTCGTTTCGGAACGA
TTCTGTGTGATCTGCGACGGTATAACCAGTTACCATCTGGTGGACACCGG
CGACAGAACGCGCACCGATGTGCAGGAGTGGCAACGGATTACACGCTCGC
CGGTGAATAATAACAGTGGTCATCGCGGCTTTGCACTCTTCGATGCCCGG
CTGGATGTGCTGCAGGAACGTAAGCAGATCTCGCTGGTGGCCGGTCATGT
GGCACGCCGTGATGCAGTTGGCCAAGATCAGACGCACGTCTATTACATGG
ACTTGACCTGGGCACGGTGGACTCATTCGCCCACCAATGACGAGTGGTCA
TATAATATCTGTCAACGGCTGGAGACCACTGGCTCTGTGCACTACTGCGC
CTTTGAGCCTCGCGCCGAGTCCCTAGTCATTGCCAGCAACCGCGATGTTC
AGACTCCCGAGGAGCGTCGGGCAGCCGATGAAGCAGCCGCTGCCCGCTTG
AATTCCTCAGGTGATCACGATGGCCAGCTGGAAAATGGAGGTCCACCTAG
TTATAGCTGGTCCCAAACGGATAATAATGTGCTCATTCGTTTCAATGTTC
CTTCAACTGCATCCGCTAAAGAGTTTAACGTGAGCGGTTCTAAAACCACT
GTCGTTGTAAAGCATCTGGATGAGGTTATATTCGACGAAGAGTTATACGC
CAGTGTGGGAGATGATTTAAGTGCATTTAAGTTGGCTGAGAATGGCCTAG
AATTGTCACTAACCAAGGCGGAGATTCAGAACTGGCCACGTTTGTTCGCG
CAGAAGAAAGATGACGTAGCGGAGGAAGTACATCCAATGGAAGCTCCACC
ACTGCCCATTCCAAGTCTGCAGGATCCCGTTGAAGAATGTGACTTAATAT
CCGCTGATGAAGAAATGAAGATGGTACGCTTCAATTTGACCAGCGGGTGC
ATCACCCACACTATTTTTCTTGGTCCCCCGCCACTGGTGCTCACCACCAC
GCTGCGTCCTGGCTTTCCAGCCGCCTTTGCTACCCGCCAGGGCGTCGACG
CCTCCATATGGCTACAGATGTACCAGCCCAGTCGTCCAGATGAATGGAGT
GTCCGCCACGAGGGCCAGCTGCACGCCTTCGGCTACGTGCAGGCCTCCAA
GGTTGTGCGGAAATTCACCGTCTGCAGTCCGGATCTGGATTACGTAGCCA
TATGTGACCCTGTACGCTACGTTCTCGTCTACTTTCCGGCTAATAATTCG
GCTGATGGTCTCCGCAGGCGAAACGGACCTCCCGTCACCTTGGGTAAACA
AAAGCTCATCACCTTGGGCAACGAGATTGACGAGATTCTGGGCATAACCA
CGGCAAACAATCTGATCACCGTTCTCTCCAAGAAAGAACTGATACACCTG
CAGGTGGCAAGCTTTCTAGACCAT
BO15554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1743 | CG10347-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
| CG10347-RB | 1743 | CG10347-PB | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 114..1853 | 17..1756 | 8700 | 100 | Plus |
| CG10347-RB | 2024 | CG10347-RB | 117..1856 | 17..1756 | 8700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11853401..11854658 | 1274..17 | 6290 | 100 | Minus |
| X | 23542271 | X | 11852860..11853342 | 1756..1274 | 2415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:59:29 has no hits.
BO15554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:09 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RA | 107..1855 | 6..1756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:53 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..1856 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:32 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RA | 116..1855 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:51 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..1856 | 17..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:51 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11852858..11853341 | 1275..1758 | 99 | <- | Minus |
| X | 11853401..11854658 | 17..1274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:53 Download gff for
BO15554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11746891..11747374 | 1275..1758 | 99 | <- | Minus |
| arm_X | 11747434..11748691 | 17..1274 | 100 | | Minus |
BO15554.pep Sequence
Translation from 16 to 1774
> BO15554.pep
MPVVELKVDRNLVCSDFSGYKLAFDSVPVLRQELGCDAYVLDPSSNQFSL
LHTELFARHNHLVADPWMRHCSYFFNKRHQLVQCNYDLQTGRARAQRVVL
TVDYRDQGDGELHRSGDYNYTIVFVSERFCVICDGITSYHLVDTGDRTRT
DVQEWQRITRSPVNNNSGHRGFALFDARLDVLQERKQISLVAGHVARRDA
VGQDQTHVYYMDLTWARWTHSPTNDEWSYNICQRLETTGSVHYCAFEPRA
ESLVIASNRDVQTPEERRAADEAAAARLNSSGDHDGQLENGGPPSYSWSQ
TDNNVLIRFNVPSTASAKEFNVSGSKTTVVVKHLDEVIFDEELYASVGDD
LSAFKLAENGLELSLTKAEIQNWPRLFAQKKDDVAEEVHPMEAPPLPIPS
LQDPVEECDLISADEEMKMVRFNLTSGCITHTIFLGPPPLVLTTTLRPGF
PAAFATRQGVDASIWLQMYQPSRPDEWSVRHEGQLHAFGYVQASKVVRKF
TVCSPDLDYVAICDPVRYVLVYFPANNSADGLRRRNGPPVTLGKQKLITL
GNEIDEILGITTANNLITVLSKKELIHLQVASFLDH
BO15554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PA | 580 | CG10347-PA | 1..580 | 1..580 | 3071 | 100 | Plus |
| CG10347-PB | 580 | CG10347-PB | 1..580 | 1..580 | 3071 | 100 | Plus |
