Clone BO15555 Report

Search the DGRC for BO15555

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:155
Well:55
Vector:pDNR-Dual
Associated Gene/Transcriptlack-RA
Protein status:BO15555.pep: Imported from assembly
Sequenced Size:3217

Clone Sequence Records

BO15555.5prime Sequence

858 bp (780 high quality bases) assembled on 2006-05-30

> BO15555.5prime
GAAGTTATCAGTCGACATGAATAAATTGGATTACCCACGTCGCAATGGTA
CACACAAAGTTCGAATAACGATATTGTGTGCTAGAAACTTGGCCCGCAAG
GATTTATTTCGTCTACCCGATCCCTTTGCTAAGGTGCAGGTGGATGGAAC
TGGGCAGGTGTACTCGACGGAAATAAGCAAATCCTCTCTGGATCCAAAAT
GGAATGCACATTACGATTTGTTTTTGGGCATTGGGGATGCCATTACGATA
ACTGTGTGGAATCAGCGAAAGATACACAAGGGCAGTGGATTCCTGGGCTG
TGTGAGGATACCGGCGTTCAACATACAGAGCCTCAAAGGAGCTGGGTTTC
AACGCTTGGATCTGGGAAAACTGTCGCCGGATGACGATGAGCTTGTACGT
GGTCAAATCATCATTTCGTTGCTCTCGAAGGACGGTCCTAGTAGTGGTAA
TCCTCTGGCCATTGTAGGACCCAGTGGTGATGTCCGTGGACCGTCGGAAG
ATGACTCCTCGGAAGATAGTTTGCCAGAGGGTTGGGAGGAGCGGCGTACG
GACAACGGTCGAGTTTACTATGTGAACCATGCCACCAAATCGACGCAGTG
GGATCGACCAAGACAGCCAGGAGTAGTTGGATCCAGTCACGCCACTTCAC
CACAGCAACGGCACAACACGCACAATGGCAACAGCGGTGATCGACAAGCT
CCGGCTGGGCCAACCCGCTCTACAACTTGCACGAACCTGATGAATAACGG
TCATCGCAGCCGGGACTTGTCTGTGACGGCTTTCAATGAACGTAAACACT
CTACGGAAATCCTGTCCAGCGTGGGCAAAGAAAACACCAGCCCCCCAACG
CCCGTTTC

BO15555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4943-PA 3186 lack-RA 1..766 17..782 3830 100 Plus
CG4943-PA 3186 lack-RA 770..842 786..858 265 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 905..1746 17..858 4105 99.3 Plus
Smurf-RA 4885 CG4943-RA 905..1746 17..858 4105 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17600142..17600652 348..858 2450 98.6 Plus
2R 25286936 2R 17599850..17600086 111..347 1185 100 Plus
2R 25286936 2R 17593850..17593904 17..71 275 100 Plus
2R 25286936 2R 17593966..17594006 72..112 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:52:19 has no hits.

BO15555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:54 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
lack-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:54 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4943-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:33 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
lack-RA 905..1746 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:37 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 905..1746 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:37 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17593850..17593904 17..71 100 -> Plus
2R 17593966..17594004 72..110 100 -> Plus
2R 17599850..17600086 111..347 100 -> Plus
2R 17600142..17600652 348..858 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:33 Download gff for BO15555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13481355..13481409 17..71 100 -> Plus
arm_2R 13481471..13481509 72..110 100 -> Plus
arm_2R 13487355..13487591 111..347 100 -> Plus
arm_2R 13487647..13488157 348..858 98   Plus

BO15555.3prime Sequence

796 bp (715 high quality bases) assembled on 2006-05-30

> BO15555.3prime
ATGGTCTAGAAAGCTTGCCTCCACGGCAAATCCACAGGTCTCCTCAACGG
CCTGCGTCAGCTTGTCGCAAAGTAGCTGGTACGTCTCGTAGGGCGGCAAA
TCGATCCGGTTAAAGCAGGTGTGCGCCTTGGGCAGGTTCTGCGTGGGCAC
GTCGGCAGTCAGGTGAATAGTAAACAGCCGTGGTCCCACCGCTCCCGTGG
AGCCCTGTAGCGCTCTGAAGCCCTGCAGCGGCACTCGCGATGATCCTGTC
ACGAATTGCAGCAGACGGGCTCTCATCTCAGAACTATAGGACTCGACCAC
CTGCCAGAACCACAACACCTGCGTCGTTTCGTTCGTACAGTGCTTCAGTC
TCGTATTGTTCCGCCAGTCGTTGACATCTATGCTAGAGATGCCACCAATG
ACCAATTCCAATTCGCGCTCATCAAACGGTCTTAGGAGATGGCTGGGTAT
AAGCTCACAAAAACCTTTCTGCAGAGCCAAAAATTGTTGTTCAATGCCGC
GCATAAAACGATAGTTCACATAGAGCTTGACATACTCGCGTTTGTTCTCC
TCCGTCACTGGAATGGAGGCACCGCCAGGCTTCAGTTCATGCACCACCAG
AGCACCAAAGCTATTGTTCTCTACACTGAATGTGGATTCAATGATGCCGC
TGATGTTGCTTTCCAGCATCCAGGTGAGGCTGCGATGTAGGTCCGGATCC
ACGCCTTCAATATCACCAAGCGTAATCGGCTTGTTCAGCAGCTGCTTGTA
AAAGGGTGTAGTGAACCCCCCATCCAGACAGTGACCGTGGAACACG

BO15555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4943-PA 3186 lack-RA 2406..3183 796..19 3840 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 3310..4087 796..19 3860 99.7 Minus
Smurf-RA 4885 CG4943-RA 3310..4087 796..19 3860 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17602900..17603183 302..19 1420 100 Minus
2R 25286936 2R 17602404..17602607 664..461 1020 100 Minus
2R 25286936 2R 17602661..17602829 466..298 845 100 Minus
2R 25286936 2R 17602216..17602348 796..664 635 98.5 Minus
Blast to na_te.dros performed on 2015-02-03 07:18:36 has no hits.

BO15555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:50:52 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
lack-PA 2406..3186 15..796 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:54:53 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4943-PA 2406..3186 15..796 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:33 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
lack-RA 3310..4091 14..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:34 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 3310..4091 14..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:34 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17602902..17603187 14..300 99   Minus
2R 17602216..17602347 665..796 98 -> Minus
2R 17602404..17602603 465..664 100 -> Minus
2R 17602663..17602826 301..464 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:33 Download gff for BO15555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13490407..13490692 14..300 99   Minus
arm_2R 13490168..13490331 301..464 100 -> Minus
arm_2R 13489721..13489852 665..796 98 -> Minus
arm_2R 13489909..13490108 465..664 100 -> Minus

BO15555.complete Sequence

3217 bp assembled on 2009-08-24

GenBank Submission: KX797635

> BO15555.complete
GAAGTTATCAGTCGACATGAATAAATTGGATTACCCACGTCGCAATGGTA
CACACAAAGTTCGAATAACGATATTGTGTGCTAGAAACTTGGCCCGCAAG
GATTTATTTCGTCTACCCGATCCCTTTGCTAAGGTGCAGGTGGATGGAAC
TGGGCAGGTGTACTCGACGGAAATAAGCAAATCCTCTCTGGATCCAAAAT
GGAATGCACATTACGATTTGTTTTTGGGCATTGGGGATGCCATTACGATA
ACTGTGTGGAATCAGCGAAAGATACACAAGGGCAGTGGATTCCTGGGCTG
TGTGAGGATACCGGCGTTCAACATACAGAGCCTCAAAGGAGCTGGGTTTC
AACGCTTGGATCTGGGAAAACTGTCGCCGGATGACGATGAGCTTGTACGT
GGTCAAATCATCATTTCGTTGCTCTCGAAGGACGGTCCTAGTAGTGGTAA
TCCTCTGGCCATTGTAGGACCCAGTGGTGATGTCCGTGGACCGTCGGAAG
ATGACTCCTCGGAAGATAGTTTGCCAGAGGGTTGGGAGGAGCGGCGTACG
GACAACGGTCGAGTTTACTATGTGAACCATGCCACCAAATCGACGCAGTG
GGATCGACCAAGACAGCCAGGAGTAGTTGGATCCAGTCACGCCACTTCAC
CACAGCAACGGCACAACACGCACAATGGCAACAGCGGTGATCGACAAGCT
CCGGCTGGGCCAACCCGCTCTACAACTTGCACGAACCTGATGAATAACGG
TCATCGCAGCCGGGACTTGTCTGTGACGGCTTCAGATGAACGTAGACACT
CTACGGAAATCCTGTCCAGCGTGGGCAAGGAGAACACCAGCCCCACAACG
CCCGTTTCGGCCACGACAACGCCTGGCAAAAAAACATCCTCATCGAACTC
ATCCTCGGCAGGTGGTCGCACTTTGGAGCAGCGTCCGACAAACGAACCAG
CAACACCCACCAGCAGTACGACATCGGCGTCGGTTCGCCTGCATAGCAAC
GACAATCATGTAAAAACACCAAAGCACCAAACGAATGGCCATGCTCCGCC
AGAGTCCACGCCCACATCCCCCACGGGTCAGCAGAACTATGTAAATGGAA
ATGCTCAGAATGGAAGTACCAGCGGAAATGGAAGTGGCCAGGCGGCGCAG
CCCCAGAGTGCTAGTAACGGATGGACGCAAGAAGATGCCGCAACGACTAC
TTCACCTTCAACCACAACCTCTCCTCCCAGGCATAGTCAAAGTCCGCCAA
CTCCAAATATATCGCCGCCAGCTTCAGTGACACCCTCTGCAAATGGAAAT
GTGCACAGTCCGAATGCGAACAGCACACCAGCCGGAAGCGGAGGAGGAAG
TAGATCCTATACAGCAGCAACGCCCGGTCAACGCTCTCAGCGTCGGAGCT
CGCGGCAACAAGGTGAGGAGTCCTCCACCAGACGACGGTCTTCACGGGGA
ACAAGAAATGGGGGCACATCTGGCGGCGGAGGTGGAGGTGGATCTGGGCA
GAGGTACGCCTCGGCAGCCATTGCAGCTGCCAATCAGGCAGCACGACCAT
TTTTGGATCTGCCGCCCGGCTATGAAATGCGAACAACGCAACAAGGGCAG
GTATACTTTTATCACATACCCACTGGTGTATCCACGTGGCATGATCCTCG
GATACCCAGAGATTTCGACACCCAACATCTAACGCTTGACGCTATCGGAC
CATTGCCGAGTGGTTGGGAACAGCGAAAGACGGCCTCCGGAAGGGTTTAC
TTTGTGGACCACAACAACCGAACCACACAGTTTACGGATCCCCGGCTAAG
TGGCAGTATTTTGCAAATGATTCGACGTGGAACCGTACCACCAACATCCG
CTGCAAATGCTGGAACACCAGCTCCGCCATCGGCTACTCCTGCTACCCCC
TCGGCCGCAGCAGCAGTTCCACCACAGGCGACGCCGGCGAGCAACGCAAC
TCCAACGACGCTTACAACTACAACAAACCCGCCCCATCGTATTGTTCCGG
ATCTGCCACAGGGATTGCTTGAAGGCGCCGACCTTTTGCCCAAGTACCGC
CGCGATTTGGTTGGCAAGCTGCGGGCTCTGCGCACGGAGCTGCAAACGAT
GCAGCCGCAATCCGGCCACTGCCGTTTGGAGGTGTCACGCAACGAGATTT
TCGAGGAGAGCTATAGACTGATAATGAAAATGCGGGCCAAGGACATGCGA
AAGCGTCTAATGGTTAAATTTAAGGGCGAGGAGGGCCTGGACTATGGTGG
CGTAGCACGCGAGTGGTTGCATCTGCTTTCCCGAGAGATGTTGAATCCGC
AGTATGGCCTATTCCAGTACAGTAGGGATGATCACTACACGCTGCAAATT
AATCCAGACTCCGGTGTGAATCCCGATCACTTGTCCTATTTTCATTTCGT
GGGTCGCACACTAGGGATTGCCGTGTTCCACGGTCACTGTCTGGATGGTG
GGTTCACTACACCCTTCTACAAGCAGCTGCTGAACAAGCCGATTACGCTT
GGTGATATTGAAGGCGTGGATCCGGACCTACATCGCAGCCTCACCTGGAT
GCTGGAAAGCAACATCAGCGGCATCATTGAATCCACATTCAGTGTAGAGA
ACAATAGCTTTGGTGCTCTGGTGGTGCATGAACTGAAGCCTGGCGGTGCC
TCCATTCCAGTGACGGAGGAGAACAAACGCGAGTATGTCAAGCTCTATGT
GAACTATCGTTTTATGCGCGGCATTGAACAACAATTTTTGGCTCTGCAGA
AAGGTTTTTGTGAGCTTATACCCAGCCATCTCCTAAGACCGTTTGATGAG
CGCGAATTGGAATTGGTCATTGGTGGCATCTCTAGCATAGATGTCAACGA
CTGGCGGAACAATACGAGACTGAAGCACTGTACGAACGAAACGACGCAGG
TGTTGTGGTTCTGGCAGGTGGTCGAGTCCTATAGTTCTGAGATGAGAGCC
CGTCTGCTGCAATTCGTGACAGGATCATCGCGAGTGCCGCTGCAGGGCTT
CAGAGCGCTACAGGGCTCCACGGGAGCGGTGGGACCACGGCTGTTTACTA
TTCACCTGACTGCCGACGTGCCCACGCAGAACCTGCCCAAGGCGCACACC
TGCTTTAACCGGATCGATTTGCCGCCCTACGAGACGTACCAGCTACTTTG
CGACAAGCTGACGCAGGCCGTTGAGGAGACCTGTGGATTTGCCGTGGAGG
CAAGCTTTCTAGACCAT

BO15555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 3186 CG4943-PB 1..3183 17..3199 15915 100 Plus
Smurf-RA 3186 CG4943-PA 1..3183 17..3199 15915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 905..4087 17..3199 15915 100 Plus
Smurf-RA 4885 CG4943-RA 905..4087 17..3199 15915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17600142..17602348 348..2554 11035 100 Plus
2R 25286936 2R 17602900..17603183 2916..3199 1420 100 Plus
2R 25286936 2R 17599850..17600086 111..347 1185 100 Plus
2R 25286936 2R 17602404..17602607 2554..2757 1020 100 Plus
2R 25286936 2R 17602661..17602829 2752..2920 845 100 Plus
2R 25286936 2R 17593850..17593904 17..71 275 100 Plus
2R 25286936 2R 17593966..17594006 72..112 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:28:10 has no hits.

BO15555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:42 Download gff for BO15555.complete
Subject Subject Range Query Range Percent Splice Strand
lack-RA 882..4064 17..3201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:31 Download gff for BO15555.complete
Subject Subject Range Query Range Percent Splice Strand
lack-RA 905..4087 17..3201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:15 Download gff for BO15555.complete
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 905..4087 17..3201 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:15 Download gff for BO15555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17602902..17603183 2918..3201 99   Plus
2R 17593850..17593904 17..71 100 -> Plus
2R 17593966..17594004 72..110 100 -> Plus
2R 17599850..17600086 111..347 100 -> Plus
2R 17600142..17602347 348..2553 100 -> Plus
2R 17602404..17602603 2554..2753 100 -> Plus
2R 17602663..17602826 2754..2917 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:31 Download gff for BO15555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13481355..13481409 17..71 100 -> Plus
arm_2R 13481471..13481509 72..110 100 -> Plus
arm_2R 13487355..13487591 111..347 100 -> Plus
arm_2R 13487647..13489852 348..2553 100 -> Plus
arm_2R 13489909..13490108 2554..2753 100 -> Plus
arm_2R 13490168..13490331 2754..2917 100 -> Plus
arm_2R 13490407..13490688 2918..3201 99   Plus

BO15555.pep Sequence

Translation from 16 to 3217

> BO15555.pep
MNKLDYPRRNGTHKVRITILCARNLARKDLFRLPDPFAKVQVDGTGQVYS
TEISKSSLDPKWNAHYDLFLGIGDAITITVWNQRKIHKGSGFLGCVRIPA
FNIQSLKGAGFQRLDLGKLSPDDDELVRGQIIISLLSKDGPSSGNPLAIV
GPSGDVRGPSEDDSSEDSLPEGWEERRTDNGRVYYVNHATKSTQWDRPRQ
PGVVGSSHATSPQQRHNTHNGNSGDRQAPAGPTRSTTCTNLMNNGHRSRD
LSVTASDERRHSTEILSSVGKENTSPTTPVSATTTPGKKTSSSNSSSAGG
RTLEQRPTNEPATPTSSTTSASVRLHSNDNHVKTPKHQTNGHAPPESTPT
SPTGQQNYVNGNAQNGSTSGNGSGQAAQPQSASNGWTQEDAATTTSPSTT
TSPPRHSQSPPTPNISPPASVTPSANGNVHSPNANSTPAGSGGGSRSYTA
ATPGQRSQRRSSRQQGEESSTRRRSSRGTRNGGTSGGGGGGGSGQRYASA
AIAAANQAARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIPRDF
DTQHLTLDAIGPLPSGWEQRKTASGRVYFVDHNNRTTQFTDPRLSGSILQ
MIRRGTVPPTSAANAGTPAPPSATPATPSAAAAVPPQATPASNATPTTLT
TTTNPPHRIVPDLPQGLLEGADLLPKYRRDLVGKLRALRTELQTMQPQSG
HCRLEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREW
LHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLG
IAVFHGHCLDGGFTTPFYKQLLNKPITLGDIEGVDPDLHRSLTWMLESNI
SGIIESTFSVENNSFGALVVHELKPGGASIPVTEENKREYVKLYVNYRFM
RGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNT
RLKHCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQG
STGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQ
AVEETCGFAVEASFLDH

BO15555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-PB 1061 CG4943-PB 1..1061 1..1061 5617 100 Plus
Smurf-PA 1061 CG4943-PA 1..1061 1..1061 5617 100 Plus
Su(dx)-PF 949 CG4244-PF 230..949 360..1061 1125 36.8 Plus
Su(dx)-PE 949 CG4244-PE 230..949 360..1061 1125 36.8 Plus
Su(dx)-PA 949 CG4244-PA 230..949 360..1061 1125 36.8 Plus