Clone Sequence Records
BO15561.3prime Sequence
843 bp (732 high quality bases) assembled on 2006-05-30
> BO15561.3prime
ATGGTCTAGAAAGCTTGCATACTCCTCGTCCTCTGGTGGTGCATCGTCAG
GCGGCGCAAAACCATCCTCAGTCGCATATAAGATGTCCAAAATCTTTTGT
ATGATCGGATGCGCCTCGGCGTCATCGGCTTCTTGGCAAAGAATTTCAAT
ATCCCGCAACTTAGAGAAGTAAAAGTCTCGCTCCTTTTCCAATCCCTCCA
GGTTTATGCGCATATCCATCACCTGATTTGACATCTCTTCTATTTGTTGA
TTGTTGACCGAATTGCTCACGTCGTTCTTCTTGACCGTGCCCGTGCTGTT
GGCACAGGCGTTTATTCTGCTCGCTGGGGCTGCGTTGTTCGTGCGCGGCA
GCACCTTGGATATGGGCTTCACTGCAGACGTCATTGCTGGGCGTGTCGTT
GCCGATGGGCCACGTCGATAGCTGCTGGACACGCCGCTTGCCGCCGTGCC
GGGCAGTGACTTTACCGCTCCCGATCCGAAGCCCATTGGGGCTCCCTCGC
GCACCGCGCTGGCATCGTAATCCCTGCCATCGTAATTGGCATCGAAGAAC
TTTTTAAACCATTGCAAAAACTCGAAATTGTCTTGGAAGCGACCCTTGAC
TAATTTGTCAATGGGTATAATCTTATCCACAGACATCTTCTTGAAGCCCG
CCTGCAATATCTTGAAGTTCTGTATGTACTCGTGCTCCAGATTGGTACGA
AATTTGACACGCTTTACTGGCACTGAATTGGGAAACAGCATGTCCATGAA
CTGACAGTAAGCTGCACCTGTGCAGAGCTCCTCCATTTTTGAAAATTGCG
ACTGGAGGGCATCGTTAACCCAAGCTAACATATCGTGGCGCGG
BO15561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3265-PE | 873 | Eb1-RE | 47..870 | 842..19 | 3995 | 99.3 | Minus |
| CG3265-PB | 876 | Eb1-RB | 47..526 | 842..363 | 2275 | 98.9 | Minus |
| CG3265-PD | 876 | Eb1-RD | 47..526 | 842..363 | 2275 | 98.9 | Minus |
| CG3265-PA | 876 | Eb1-RA | 47..526 | 842..363 | 2275 | 98.9 | Minus |
| CG3265-PC | 1182 | Eb1-RC | 836..1179 | 362..19 | 1720 | 100 | Minus |
| CG3265-PB | 876 | Eb1-RB | 530..873 | 362..19 | 1720 | 100 | Minus |
| CG3265-PD | 876 | Eb1-RD | 530..873 | 362..19 | 1720 | 100 | Minus |
| CG3265-PA | 876 | Eb1-RA | 530..873 | 362..19 | 1720 | 100 | Minus |
| CG3265-PC | 1182 | Eb1-RC | 573..832 | 622..363 | 1300 | 100 | Minus |
| CG3265-PC | 1182 | Eb1-RC | 47..269 | 842..620 | 990 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 1870 | CG3265-RE | 242..1065 | 842..19 | 4045 | 99.4 | Minus |
| Eb1-RG | 2043 | CG3265-RG | 149..975 | 842..19 | 4005 | 99 | Minus |
| Eb1-RA | 1873 | CG3265-RA | 242..1068 | 842..19 | 4005 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202105..25202847 | 842..93 | 2875 | 93.4 | Minus |
| 2R | 25286936 | 2R | 6754178..6754438 | 623..363 | 1305 | 100 | Minus |
| 2R | 25286936 | 2R | 6752841..6752988 | 769..622 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 6754705..6754847 | 362..220 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 6754894..6754981 | 227..140 | 440 | 100 | Minus |
| 2R | 25286936 | 2R | 6755045..6755118 | 139..66 | 370 | 100 | Minus |
| 2R | 25286936 | 2R | 6752710..6752786 | 842..766 | 310 | 93.5 | Minus |
| 2R | 25286936 | 2R | 6755183..6755232 | 68..19 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 7767898..7768136 | 536..774 | 235 | 73.2 | Plus |
| 2R | 25286936 | 2R | 6753251..6753318 | 597..530 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:28:52 has no hits.
BO15561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:03 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-PE | 45..873 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:55:09 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3265-PE | 45..873 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:44 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 240..1071 | 10..843 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:21 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 240..1071 | 10..843 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:21 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202104..25202852 | 86..843 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:44 Download gff for
BO15561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687582..688330 | 86..843 | 92 | | Minus |
BO15561.5prime Sequence
859 bp (698 high quality bases) assembled on 2006-05-30
> BO15561.5prime
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCATATCCAAG
GTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGCCTG
TGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGGTCA
ACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGCATA
AACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTTGCG
GGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATCCGA
TCATACAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTTGCG
CCGCCTGAC
BO15561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3265-PE | 873 | Eb1-RE | 1..843 | 17..859 | 4215 | 100 | Plus |
| CG3265-PB | 876 | Eb1-RB | 1..526 | 17..542 | 2630 | 100 | Plus |
| CG3265-PD | 876 | Eb1-RD | 1..526 | 17..542 | 2630 | 100 | Plus |
| CG3265-PA | 876 | Eb1-RA | 1..526 | 17..542 | 2630 | 100 | Plus |
| CG3265-PC | 1182 | Eb1-RC | 836..1152 | 543..859 | 1585 | 100 | Plus |
| CG3265-PB | 876 | Eb1-RB | 530..846 | 543..859 | 1585 | 100 | Plus |
| CG3265-PD | 876 | Eb1-RD | 530..846 | 543..859 | 1585 | 100 | Plus |
| CG3265-PA | 876 | Eb1-RA | 530..846 | 543..859 | 1585 | 100 | Plus |
| CG3265-PC | 1182 | Eb1-RC | 1..269 | 17..285 | 1345 | 100 | Plus |
| CG3265-PC | 1182 | Eb1-RC | 573..832 | 283..542 | 1300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 1870 | CG3265-RE | 194..1038 | 15..859 | 4225 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..948 | 15..859 | 4185 | 99.6 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1041 | 15..859 | 4185 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 15..812 | 3130 | 93.9 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754705..6754847 | 543..685 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 678..765 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 766..839 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:31:30 has no hits.
BO15561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:04 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-PE | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:55:10 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3265-PE | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:20 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1038 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:17 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1038 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:17 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202052..25202852 | 9..819 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:20 Download gff for
BO15561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687530..688330 | 9..819 | 93 | | Plus |
BO15561.complete Sequence
904 bp (904 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633506
> BO15561.complete
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCATATCCAAG
GTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGCCTG
TGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGGTCA
ACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGCATA
AACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTTGCG
GGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATCCGA
TCATACAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTTGCG
CCGCCTGACGATGCACCACCAGAGGACGAGGAGTATGCAAGCTTTCTAGA
CCAT
BO15561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 873 | CG3265-PE | 1..870 | 17..886 | 4350 | 100 | Plus |
| Eb1-RG | 876 | CG3265-PG | 1..873 | 17..886 | 4285 | 99.7 | Plus |
| Eb1-RA | 876 | CG3265-PA | 1..873 | 17..886 | 4285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 1870 | CG3265-RE | 194..1065 | 15..886 | 4360 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..975 | 15..886 | 4295 | 99.7 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1068 | 15..886 | 4295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 15..812 | 3130 | 93.9 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754705..6754847 | 543..685 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 678..765 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 766..839 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 837..886 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:39:08 has no hits.
BO15561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:22 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:25 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 224..1106 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:45 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 196..1065 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:22 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 224..1106 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:46 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 196..1065 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:46 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202059..25202852 | 17..819 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:45 Download gff for
BO15561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687537..688330 | 17..819 | 93 | | Plus |
BO15561.pep Sequence
Translation from 16 to 904
> BO15561.pep
MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDM
LFPNSVPVKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGR
FQDNFEFLQWFKKFFDANYDGRDYDASAVREGAPMGFGSGAVKSLPGTAA
SGVSSSYRRGPSATTRPAMTSAVKPISKVLPRTNNAAPASRINACANSTG
TVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKERDFYFSKLRDIEIL
CQEADDAEAHPIIQKILDILYATEDGFAPPDDAPPEDEEYASFLDH
BO15561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-PE | 290 | CG3265-PE | 1..290 | 1..290 | 1509 | 100 | Plus |
| Eb1-PG | 291 | CG3265-PG | 1..291 | 1..290 | 1496 | 99.3 | Plus |
| Eb1-PA | 291 | CG3265-PA | 1..291 | 1..290 | 1496 | 99.3 | Plus |
| Eb1-PD | 291 | CG3265-PD | 1..291 | 1..290 | 1496 | 99.3 | Plus |
| Eb1-PB | 291 | CG3265-PB | 1..291 | 1..290 | 1496 | 99.3 | Plus |
