Clone Sequence Records
BO15574.complete Sequence
2017 bp assembled on 2009-10-20
GenBank Submission: KX797749
> BO15574.complete
GAAGTTATCAGTCGACATGAGCGAATCTCTTGATAAGACCACCAGCCCGA
GCTCGGCCAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAG
GGCCACGACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAG
CCACGTATTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGG
AGTCGCCGGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGAC
ATTGTGGGTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGAT
GTCGGGCGCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCT
CGGCGTCCGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGC
ACCAATAGTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTT
TCTCTACGTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGT
TGCACCGGGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACC
TTCGAGGACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTG
GCAGTTGCATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATG
AGCGACGCCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGT
GACGCTCGTGAGGTCTTCAACATGCACGTGACGCCGGTGCTCAACGAGGC
CGAGGTGCCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCG
AGTTCTTGAGCACCAGGTGCCTGGACGCCTGGTGCTGCGTGGTGGCTGTC
GGCGGAGACGGTCTCTTCCACGAGATAGTCAATGGACTGCTGCAGCGCCA
GGACTGGGCCCACGTCCTGCCTCATCTGGCACTGGGAATCATTCCTTGCG
GCTCCGGAAATGGATTGGCCCGCTCCATTGCCCATTGTTACAACGAACCA
TACTTCAGCAAGCCAGTGCTAGGAGCTGCTCTGACCGTAATCAGTGGACG
CAGTTCACCCATGGACGTGGTCCGGGTGCAGCTGCAGAGTCGCTCCCTCT
ACTCCTTCCTGTCCATCGGCTGGGGTCTGATCTCGGACGTGGACATCGAG
AGCGAGCGCATTCGCATGTTGGGCTACCAGCGCTTCACCGTGTGGACCCT
CTACCGTCTGGTGAATCTGCGCACCTACAACGGCCGAATCAGCTATCTTC
TGACGGACCATGAGGTGTCCTCAACCCATAGCGCTACCGGTTATGCTGCC
CAGCGGAGAATGCAGAGCAGCCGTAGCTGCAACACGCACATCGACATGCT
AAATGGGCCGGCGCCCATCTATCATTCCAGTGCCGAGTACCTGCCACAGG
AGTTTGCGGACGTGATCTCCCTGGAGACGTCCATCAATCAGTCGTTCCGC
TCGAGGTGCGACAGCTGGTTGTCGGGGGGATCGCGGCGCAGCTTTTACTA
TTCCATATCGGAGAGCATCTACCACAGTCTGGCGGATGAGAGCGAGTTCG
CCGGCCTGGCGGCCGCCTCGCTGGAAAACCGGCAGCAGAACTACGGTCCG
GCAAGCGAGCTGCCGGATCTGAACGAACCGCTGTCCGAGGATCAGGGTTG
GCTGGTGGAGGAGGGCGAGTTCGTCATGATGCACGCCGTTTACCAGACCC
ATCTGGGCATCGACTGTCATTTTGCGCCCAAGGCCCAGCTGAACGACGGC
ACCATCTACCTGATCCTCATACGCGCCGGCATCAGCCGCCCGCACCTGCT
GAGCTTCCTCTACAACATGAGCTCCGGCACTCACCTGCCGGAGTCGCACG
ACGACCATGTGAAGGTGCTGCCAGTGCGAGCATTCCGCCTGGAGCCCTAC
GACAATCACGGCATCATCACGGTCGACGGCGAGCGCGTCGAGTTCGGGCC
CCTCCAAGCTGAGGTCCTGCCGGGCATAGCCCGCGTCATGGTGCCCAAGG
CAAGCTTTCTAGACCAT
BO15574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 1986 | CG32484-PA | 1..1983 | 17..1999 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 96..2086 | 9..1999 | 9940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3048646..3049651 | 994..1999 | 5030 | 100 | Plus |
| 3L | 28110227 | 3L | 3047182..3048166 | 9..993 | 4910 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:08:29 has no hits.
BO15574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:48 Download gff for
BO15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 235..2217 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:36 Download gff for
BO15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 104..2086 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:03 Download gff for
BO15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 104..2086 | 17..2001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:03 Download gff for
BO15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3047190..3048166 | 17..993 | 100 | -> | Plus |
| 3L | 3048646..3049651 | 994..2001 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:36 Download gff for
BO15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3047190..3048166 | 17..993 | 100 | -> | Plus |
| arm_3L | 3048646..3049651 | 994..2001 | 99 | | Plus |
BO15574.3prime Sequence
834 bp (769 high quality bases) assembled on 2006-05-30
> BO15574.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCACCATGACGCGGGCTATGCCCGGCA
GGACCTCAGCTTGGAGGGGCCCGAACTCGACGCGCTCGCCGTCGACCGTG
ATGATGCCGTGATTGTCGTAGGGCTCCAGGCGGAATGCTCGCACTGGCAG
CACCTTCACATGGTCGTCGTGCGACTCCGGCAGGTGAGTGCCGGAGCTCA
TGTTGTAGAGGAAGCTCAGCAGGTGCGGGCGGCTGATGCCGGCGCGTATG
AGGATCAGGTAGATGGTGCCGTCGTTCAGCTGGGCCTTGGGCGCAAAATG
ACAGTCGATGCCCAGATGGGTCTGGTAAACGGCGTGCATCATGACGAACT
CGCCCTCCTCCACCAGCCAACCCTGATCCTCGGACAGCGGTTCGTTCAGA
TCCGGCAGCTCGCTTGCCGGACCGTAGTTCTGCTGCCGGTTTTCCAGCGA
GGCGGCCGCCAGGCCGGCGAACTCGCTCTCATCCGCCAGACTGTGGTAGA
TGCTCTCCGATATGGAATAGTAAAAGCTGCGCCGCGATCCCCCCGACAAC
CAGCTGTCGCACCTCGAGCGGAACGACTGATTGATGGACGTCTCCAGGGA
GATCACGTCCGCAAACTCCTGTGGCAGGTACTCGGCACTGGAATGATAGA
TGGGCGCCGGCCCATTTAGCATGTCGATGTGCGTGTTGCAGCTACGGCTG
CTCTGCATTCTCCGCTGGGCAGCATAACCGGTAGCGCTATGGGTTGAGGA
CACCTCATGGTCCGTCAGAAGATAGCTGATTCGGCCGTTGTAGGTGCGCA
GATTCACCAGACGGTAGAGGGTCCACACGGTGAA
BO15574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32484-PA | 1986 | Sk2-RA | 1168..1983 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 1271..2086 | 834..19 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3048836..3049651 | 834..19 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:44:38 has no hits.
BO15574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:25 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1170..1986 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:55:35 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1170..1986 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:56:42 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 1271..2086 | 19..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:26 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 1271..2086 | 19..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:26 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3048836..3049651 | 19..834 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:56:42 Download gff for
BO15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3048836..3049651 | 19..834 | 100 | | Minus |
BO15574.5prime Sequence
840 bp (740 high quality bases) assembled on 2006-05-30
> BO15574.5prime
GAAGTTATCAGTCGACATGAGCGAATCTCTTGATAAGACCACCAGCCCGA
GCTCGGCCAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAG
GGCCACGACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAG
CCACGTATTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGG
AGTCGCCGGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGAC
ATTGTGGGTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGAT
GTCGGGCGCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCT
CGGCGTCCGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGC
ACCAATAGTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTT
TCTCTACGTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGT
TGCACCGGGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACC
TTCGAGGACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTG
GCAGTTGCATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATG
AGCGACGCCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGT
GACGCTCGTGAGGTCTTCAACATGCACGTGACGCCGGTGCTCAACGAGGC
CGAGGTGCCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCG
AGTTCTTGAGCACCAGGTGCCTGGACGCCTGGTGCTGCGT
BO15574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32484-PA | 1986 | Sk2-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 96..927 | 9..840 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3047182..3048013 | 9..840 | 4145 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:59:44 has no hits.
BO15574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:26 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:55:37 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:28 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 89..927 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:35 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 89..927 | 1..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:35 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3047175..3048013 | 1..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:28 Download gff for
BO15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3047175..3048013 | 1..840 | 99 | | Plus |
BO15574.pep Sequence
Translation from 16 to 2017
> BO15574.pep
MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV
RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA
CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA
YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT
LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD
LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV
LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD
VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN
LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP
IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES
IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG
EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN
MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV
LPGIARVMVPKASFLDH
BO15574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-PA | 661 | CG32484-PA | 1..661 | 1..661 | 3463 | 100 | Plus |
| Sk1-PA | 641 | CG1747-PA | 18..636 | 7..658 | 1195 | 41.1 | Plus |
| Sk1-PB | 641 | CG1747-PB | 18..636 | 7..658 | 1195 | 41.1 | Plus |
| Cerk-PB | 687 | CG16708-PB | 24..596 | 12..628 | 218 | 23.8 | Plus |
| Cerk-PA | 687 | CG16708-PA | 24..596 | 12..628 | 218 | 23.8 | Plus |
