Clone Sequence Records
BO15601.3prime Sequence
902 bp (799 high quality bases) assembled on 2006-05-30
> BO15601.3prime
ATGGTCTAGAAAGCTTGCAATGCGCTCCGTGACGTAGACCTTCGCCGAGG
CGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAAG
ATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGTT
CTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATCA
GTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAAG
CTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCTC
ACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGCA
CGAACATGCCCATTGTCACGAAGCCCAGCCACGAGTGGAGGCTATAGAAG
TTGACCTTATGCAACGCGTCGTGGGAAGCGAAGACGGATATGAAACCCAG
GGCGATGCACGGAATGGCCACGGCGTGGAAGAACATGTGGATCAGCTTCA
CATAGATTTGCTTCACGCAGCGGCACAGACGATAGATCAAGATGGAAAAT
CCGGAGAGCGTGACGAAGCCAGCAATCATGAGGATGGGATGCAGATTGAA
CTGCTGCTTGGGACTCTCCGACCAGGCGAAGCCATCGCGGTAGAACATCA
CCCAGAAGAGGGTTAGCACCAGCACGCCCACCAGCAGGATCGTGGACAGG
ATGACGATCAGCAAGTATTCGCACCAGGAGCAGCAATTCCAGGCATTATC
TGGATCCTCCTCATAGCGCTTTTCATCCGGCGGCGGGGGCATCTCGATGC
CATTGGGAGTTCCCGGGGGCGACTTCTCGCTGACCCTGTCCATGGCCTCC
TCCATCGGCGGAAAGGGACTCACCGAGTTCGTGTCCATGTCGACTGATAA
CT
BO15601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PA | 873 | CG8776-RA | 1..870 | 888..19 | 4325 | 99.8 | Minus |
CG8776-PE | 804 | CG8776-RE | 51..801 | 769..19 | 3755 | 100 | Minus |
CG8776-PB | 804 | CG8776-RB | 51..801 | 769..19 | 3755 | 100 | Minus |
CG8776-PD | 633 | CG8776-RD | 1..630 | 648..19 | 3150 | 100 | Minus |
CG8776-PC | 633 | CG8776-RC | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 1994 | CG8776-RA | 373..1244 | 890..19 | 4345 | 99.9 | Minus |
nemy-RB | 1804 | CG8776-RB | 304..1054 | 769..19 | 3755 | 100 | Minus |
nemy-RC | 1601 | CG8776-RC | 101..851 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 546..769 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 12660678..12660900 | 323..545 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12660457..12660630 | 158..331 | 855 | 99.4 | Plus |
2R | 25286936 | 2R | 12660247..12660387 | 19..159 | 705 | 100 | Plus |
2R | 25286936 | 2R | 12667834..12667955 | 769..890 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:10 has no hits.
BO15601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:57 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:21 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:10:50 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 369..1242 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:23 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 371..1244 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:23 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660457..12660621 | 158..322 | 100 | <- | Plus |
2R | 12660678..12660900 | 323..545 | 100 | <- | Plus |
2R | 12660973..12661196 | 546..769 | 100 | <- | Plus |
2R | 12660247..12660385 | 19..157 | 100 | <- | Plus |
2R | 12667835..12667957 | 770..893 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:10:50 Download gff for
BO15601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547962..8548126 | 158..322 | 100 | <- | Plus |
arm_2R | 8547752..8547890 | 19..157 | 100 | <- | Plus |
arm_2R | 8548183..8548405 | 323..545 | 100 | <- | Plus |
arm_2R | 8548478..8548701 | 546..769 | 100 | <- | Plus |
arm_2R | 8555340..8555462 | 770..893 | 98 | | Plus |
BO15601.5prime Sequence
896 bp (809 high quality bases) assembled on 2006-05-30
> BO15601.5prime
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTGCAAGCTTTT
BO15601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PA | 873 | CG8776-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG8776-PE | 804 | CG8776-RE | 51..801 | 136..886 | 3755 | 100 | Plus |
CG8776-PB | 804 | CG8776-RB | 51..801 | 136..886 | 3755 | 100 | Plus |
CG8776-PD | 633 | CG8776-RD | 1..630 | 257..886 | 3150 | 100 | Plus |
CG8776-PC | 633 | CG8776-RC | 1..630 | 257..886 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 1994 | CG8776-RA | 373..1244 | 15..886 | 4360 | 100 | Plus |
nemy-RB | 1804 | CG8776-RB | 304..1054 | 136..886 | 3755 | 100 | Plus |
nemy-RC | 1601 | CG8776-RC | 101..851 | 136..886 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 359..136 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 582..360 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 747..574 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660247..12660387 | 886..746 | 705 | 100 | Minus |
2R | 25286936 | 2R | 12667834..12667955 | 136..15 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:56:00 has no hits.
BO15601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:58 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:22 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:05 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 369..1242 | 12..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:23 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 371..1244 | 12..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:23 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660247..12660385 | 748..886 | 100 | <- | Minus |
2R | 12660457..12660621 | 583..747 | 100 | <- | Minus |
2R | 12660678..12660900 | 360..582 | 100 | <- | Minus |
2R | 12660973..12661196 | 136..359 | 100 | <- | Minus |
2R | 12667835..12667957 | 12..135 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:05 Download gff for
BO15601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547752..8547890 | 748..886 | 100 | <- | Minus |
arm_2R | 8547962..8548126 | 583..747 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 360..582 | 100 | <- | Minus |
arm_2R | 8548478..8548701 | 136..359 | 100 | <- | Minus |
arm_2R | 8555340..8555462 | 12..135 | 99 | | Minus |
BO15601.complete Sequence
904 bp (904 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633509
> BO15601.complete
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTGCAAGCTTTCTAGA
CCAT
BO15601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 873 | CG8776-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
nemy-RB | 804 | CG8776-PB | 51..801 | 136..886 | 3755 | 100 | Plus |
nemy-RG | 804 | CG8776-PG | 51..801 | 136..886 | 3755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 1994 | CG8776-RA | 373..1244 | 15..886 | 4360 | 100 | Plus |
nemy-RB | 1804 | CG8776-RB | 304..1054 | 136..886 | 3755 | 100 | Plus |
nemy-RC | 1601 | CG8776-RC | 101..851 | 136..886 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 359..136 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 582..360 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 747..574 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660247..12660387 | 886..746 | 705 | 100 | Minus |
2R | 25286936 | 2R | 12667834..12667955 | 136..15 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:02:15 has no hits.
BO15601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:24 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:29 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 369..1242 | 12..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:47 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 373..1242 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:24 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 369..1242 | 12..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:48 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 375..1244 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:48 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660245..12660385 | 748..888 | 98 | <- | Minus |
2R | 12660457..12660621 | 583..747 | 100 | <- | Minus |
2R | 12660678..12660900 | 360..582 | 100 | <- | Minus |
2R | 12660973..12661196 | 136..359 | 100 | <- | Minus |
2R | 12667835..12667953 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:47 Download gff for
BO15601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547750..8547890 | 748..888 | 98 | <- | Minus |
arm_2R | 8547962..8548126 | 583..747 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 360..582 | 100 | <- | Minus |
arm_2R | 8548478..8548701 | 136..359 | 100 | <- | Minus |
arm_2R | 8555340..8555458 | 17..135 | 100 | | Minus |
BO15601.pep Sequence
Translation from 16 to 904
> BO15601.pep
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERIASFLDH
BO15601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-PA | 290 | CG8776-PA | 1..290 | 1..290 | 1526 | 100 | Plus |
nemy-PB | 267 | CG8776-PB | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PG | 267 | CG8776-PG | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PE | 267 | CG8776-PE | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 6..256 | 39..290 | 1298 | 99.2 | Plus |