Clone BO15601 Report

Search the DGRC for BO15601

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptnemy-RA
Protein status:BO15601.pep: validated full length
Sequenced Size:904

Clone Sequence Records

BO15601.3prime Sequence

902 bp (799 high quality bases) assembled on 2006-05-30

> BO15601.3prime
ATGGTCTAGAAAGCTTGCAATGCGCTCCGTGACGTAGACCTTCGCCGAGG
CGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAAG
ATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGTT
CTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATCA
GTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAAG
CTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCTC
ACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGCA
CGAACATGCCCATTGTCACGAAGCCCAGCCACGAGTGGAGGCTATAGAAG
TTGACCTTATGCAACGCGTCGTGGGAAGCGAAGACGGATATGAAACCCAG
GGCGATGCACGGAATGGCCACGGCGTGGAAGAACATGTGGATCAGCTTCA
CATAGATTTGCTTCACGCAGCGGCACAGACGATAGATCAAGATGGAAAAT
CCGGAGAGCGTGACGAAGCCAGCAATCATGAGGATGGGATGCAGATTGAA
CTGCTGCTTGGGACTCTCCGACCAGGCGAAGCCATCGCGGTAGAACATCA
CCCAGAAGAGGGTTAGCACCAGCACGCCCACCAGCAGGATCGTGGACAGG
ATGACGATCAGCAAGTATTCGCACCAGGAGCAGCAATTCCAGGCATTATC
TGGATCCTCCTCATAGCGCTTTTCATCCGGCGGCGGGGGCATCTCGATGC
CATTGGGAGTTCCCGGGGGCGACTTCTCGCTGACCCTGTCCATGGCCTCC
TCCATCGGCGGAAAGGGACTCACCGAGTTCGTGTCCATGTCGACTGATAA
CT

BO15601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PA 873 CG8776-RA 1..870 888..19 4325 99.8 Minus
CG8776-PE 804 CG8776-RE 51..801 769..19 3755 100 Minus
CG8776-PB 804 CG8776-RB 51..801 769..19 3755 100 Minus
CG8776-PD 633 CG8776-RD 1..630 648..19 3150 100 Minus
CG8776-PC 633 CG8776-RC 1..630 648..19 3150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 1994 CG8776-RA 373..1244 890..19 4345 99.9 Minus
nemy-RB 1804 CG8776-RB 304..1054 769..19 3755 100 Minus
nemy-RC 1601 CG8776-RC 101..851 769..19 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 546..769 1120 100 Plus
2R 25286936 2R 12660678..12660900 323..545 1115 100 Plus
2R 25286936 2R 12660457..12660630 158..331 855 99.4 Plus
2R 25286936 2R 12660247..12660387 19..159 705 100 Plus
2R 25286936 2R 12667834..12667955 769..890 595 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:18:10 has no hits.

BO15601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:57 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PA 1..873 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:21 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PA 1..873 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:10:50 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 369..1242 19..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:23 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 371..1244 19..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:23 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660457..12660621 158..322 100 <- Plus
2R 12660678..12660900 323..545 100 <- Plus
2R 12660973..12661196 546..769 100 <- Plus
2R 12660247..12660385 19..157 100 <- Plus
2R 12667835..12667957 770..893 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:10:50 Download gff for BO15601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547962..8548126 158..322 100 <- Plus
arm_2R 8547752..8547890 19..157 100 <- Plus
arm_2R 8548183..8548405 323..545 100 <- Plus
arm_2R 8548478..8548701 546..769 100 <- Plus
arm_2R 8555340..8555462 770..893 98   Plus

BO15601.5prime Sequence

896 bp (809 high quality bases) assembled on 2006-05-30

> BO15601.5prime
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTGCAAGCTTTT

BO15601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PA 873 CG8776-RA 1..870 17..886 4350 100 Plus
CG8776-PE 804 CG8776-RE 51..801 136..886 3755 100 Plus
CG8776-PB 804 CG8776-RB 51..801 136..886 3755 100 Plus
CG8776-PD 633 CG8776-RD 1..630 257..886 3150 100 Plus
CG8776-PC 633 CG8776-RC 1..630 257..886 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 1994 CG8776-RA 373..1244 15..886 4360 100 Plus
nemy-RB 1804 CG8776-RB 304..1054 136..886 3755 100 Plus
nemy-RC 1601 CG8776-RC 101..851 136..886 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 359..136 1120 100 Minus
2R 25286936 2R 12660678..12660900 582..360 1115 100 Minus
2R 25286936 2R 12660457..12660630 747..574 855 99.4 Minus
2R 25286936 2R 12660247..12660387 886..746 705 100 Minus
2R 25286936 2R 12667834..12667955 136..15 610 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:56:00 has no hits.

BO15601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:58 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PA 1..873 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:22 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PA 1..873 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:05 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 369..1242 12..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:23 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 371..1244 12..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:23 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660247..12660385 748..886 100 <- Minus
2R 12660457..12660621 583..747 100 <- Minus
2R 12660678..12660900 360..582 100 <- Minus
2R 12660973..12661196 136..359 100 <- Minus
2R 12667835..12667957 12..135 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:05 Download gff for BO15601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547752..8547890 748..886 100 <- Minus
arm_2R 8547962..8548126 583..747 100 <- Minus
arm_2R 8548183..8548405 360..582 100 <- Minus
arm_2R 8548478..8548701 136..359 100 <- Minus
arm_2R 8555340..8555462 12..135 99   Minus

BO15601.complete Sequence

904 bp (904 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633509

> BO15601.complete
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTGCAAGCTTTCTAGA
CCAT

BO15601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 873 CG8776-PA 1..870 17..886 4350 100 Plus
nemy-RB 804 CG8776-PB 51..801 136..886 3755 100 Plus
nemy-RG 804 CG8776-PG 51..801 136..886 3755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 1994 CG8776-RA 373..1244 15..886 4360 100 Plus
nemy-RB 1804 CG8776-RB 304..1054 136..886 3755 100 Plus
nemy-RC 1601 CG8776-RC 101..851 136..886 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 359..136 1120 100 Minus
2R 25286936 2R 12660678..12660900 582..360 1115 100 Minus
2R 25286936 2R 12660457..12660630 747..574 855 99.4 Minus
2R 25286936 2R 12660247..12660387 886..746 705 100 Minus
2R 25286936 2R 12667834..12667955 136..15 610 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:02:15 has no hits.

BO15601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:24 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..873 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:29 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 369..1242 12..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:47 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 373..1242 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:24 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 369..1242 12..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:48 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 375..1244 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:48 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660245..12660385 748..888 98 <- Minus
2R 12660457..12660621 583..747 100 <- Minus
2R 12660678..12660900 360..582 100 <- Minus
2R 12660973..12661196 136..359 100 <- Minus
2R 12667835..12667953 17..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:47 Download gff for BO15601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547750..8547890 748..888 98 <- Minus
arm_2R 8547962..8548126 583..747 100 <- Minus
arm_2R 8548183..8548405 360..582 100 <- Minus
arm_2R 8548478..8548701 136..359 100 <- Minus
arm_2R 8555340..8555458 17..135 100   Minus

BO15601.pep Sequence

Translation from 16 to 904

> BO15601.pep
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERIASFLDH

BO15601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PA 290 CG8776-PA 1..290 1..290 1526 100 Plus
nemy-PB 267 CG8776-PB 18..267 41..290 1308 100 Plus
nemy-PG 267 CG8776-PG 18..267 41..290 1308 100 Plus
nemy-PE 267 CG8776-PE 18..267 41..290 1308 100 Plus
nemy-PL 256 CG8776-PL 6..256 39..290 1298 99.2 Plus