BO15606.complete Sequence
1399 bp (1399 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633512
> BO15606.complete
GAAGTTATCAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAA
CAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATC
TTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCA
TGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGC
CAGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACG
CCCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCC
CACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACC
TGGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATAC
TCCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGAT
GAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACA
TCTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCC
GAGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGA
CTATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCG
AAAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCC
GTGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGA
GAATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGA
GAGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTAT
ACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATT
CCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGA
TGTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCG
CTGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGAT
GGAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACA
AGAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCT
TCCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGT
AGATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGG
AAGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCG
CTGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTA
CAAGCTGTATTCCTCGTACTCTCAAATGGCTGCAAGCTTTCTAGACCAT
BO15606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RB | 1368 | CG7899-PB | 1..1365 | 17..1381 | 6825 | 100 | Plus |
| Acph-1-RA | 1317 | CG7899-PA | 1..1314 | 68..1381 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RB | 1889 | CG7899-RB | 82..1446 | 17..1381 | 6825 | 100 | Plus |
| Acph-1-RA | 1944 | CG7899-RA | 149..1501 | 29..1381 | 6765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29992083..29992772 | 1015..326 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 29991753..29992014 | 1275..1014 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 29992986..29993195 | 226..17 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 29991587..29991694 | 1381..1274 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 29992829..29992927 | 325..227 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:58 has no hits.
BO15606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:10 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 1..1368 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:11 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 76..1456 | 8..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:18 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 89..1446 | 24..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:10 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 76..1456 | 8..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:26 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 89..1446 | 24..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:26 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29991754..29992012 | 1016..1274 | 100 | <- | Minus |
| 3R | 29991585..29991693 | 1275..1383 | 98 | <- | Minus |
| 3R | 29992083..29992772 | 326..1015 | 100 | <- | Minus |
| 3R | 29992829..29992927 | 227..325 | 100 | <- | Minus |
| 3R | 29992986..29993188 | 24..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:18 Download gff for
BO15606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25817307..25817415 | 1275..1383 | 98 | <- | Minus |
| arm_3R | 25817476..25817734 | 1016..1274 | 100 | <- | Minus |
| arm_3R | 25817805..25818494 | 326..1015 | 100 | <- | Minus |
| arm_3R | 25818551..25818649 | 227..325 | 100 | <- | Minus |
| arm_3R | 25818708..25818910 | 24..226 | 100 | | Minus |
BO15606.pep Sequence
Translation from 16 to 1399
> BO15606.pep
MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA
EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD
LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN
LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS
LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM
TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE
KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD
ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE
CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS
YSQMAASFLDH
BO15606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-PB | 455 | CG7899-PB | 1..455 | 1..455 | 2436 | 100 | Plus |
| Acph-1-PA | 438 | CG7899-PA | 1..438 | 18..455 | 2353 | 100 | Plus |
| CG9449-PK | 391 | CG9449-PK | 36..370 | 65..396 | 658 | 38.4 | Plus |
| CG9449-PH | 404 | CG9449-PH | 49..383 | 65..396 | 658 | 38.4 | Plus |
| CG9449-PG | 404 | CG9449-PG | 49..383 | 65..396 | 658 | 38.4 | Plus |
