BO15607.complete Sequence
1384 bp (1384 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633513
> BO15607.complete
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTG
GTACTGGAACTACCTTTACTACAAGACGGATGACGGTCTCGACTGCTGCT
CGGACTTGGCCATCTCCTTTCACTACGTAGCTCCGAATTCCTTCTATGTC
CTGGACTATCTCATCTACCACTTGAAACCCTACGGCCTACTGCGATCCCT
GGAGCCTCTGCCCGCCAAACTCAAAGTGGGTCAGTTTCTGCCGCCTCCCG
TGGAGGCCAGGGGGCGCCTGGCCAGTAACGAGGATTCCGCCGATGATTAC
GACAGGATCTATACGACCACGACCGAAAAGCCAAAGGAGCCCGATGCTCG
GGAAATGGACTCCAAGGAGGTGGAAAAAGAGGATGCCAAATACAGGGAAA
AGCTTTCAAAGGAGGACGAGGAACGCGAAGACTCGCGAAAAACTGACAAT
GATTCGGAGTATACTGAGGAGGAAACGGAAAAGCGTTCCAAGTCCAAGGA
AACATCGAAAGAAAATGCAAGCTTTCTAGACCAT
BO15607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1353 | CG8708-PD | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| CG8708-RB | 1353 | CG8708-PB | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| CG8708-RC | 1335 | CG8708-PC | 25..1332 | 59..1366 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1698 | 17..1366 | 6750 | 100 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1510 | 17..1366 | 6750 | 100 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1462 | 59..1366 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160054..8160931 | 935..58 | 4390 | 100 | Minus |
| 2R | 25286936 | 2R | 8159570..8160001 | 1366..935 | 2160 | 100 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:28:05 has no hits.
BO15607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:11 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 1..1353 | 17..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:13 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 145..1513 | 7..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:00 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1510 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:12 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 145..1513 | 7..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:40 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1510 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:40 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8159568..8160001 | 935..1368 | 99 | <- | Minus |
| 2R | 8160055..8160929 | 60..934 | 100 | <- | Minus |
| 2R | 8161033..8161075 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:00 Download gff for
BO15607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047073..4047506 | 935..1368 | 99 | <- | Minus |
| arm_2R | 4047560..4048434 | 60..934 | 100 | <- | Minus |
| arm_2R | 4048538..4048580 | 17..59 | 100 | | Minus |
BO15607.pep Sequence
Translation from 16 to 1384
> BO15607.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDGLDCCSDLAISFHYVAPNSFYVLDYLIYHLKPYGLLRSLEPLPA
KLKVGQFLPPPVEARGRLASNEDSADDYDRIYTTTTEKPKEPDAREMDSK
EVEKEDAKYREKLSKEDEEREDSRKTDNDSEYTEEETEKRSKSKETSKEN
ASFLDH
BO15607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PD | 450 | CG8708-PD | 1..450 | 1..450 | 2401 | 100 | Plus |
| CG8708-PB | 450 | CG8708-PB | 1..450 | 1..450 | 2401 | 100 | Plus |
| CG8708-PC | 444 | CG8708-PC | 1..444 | 7..450 | 2344 | 98.4 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 1..364 | 1..359 | 1276 | 63 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 1..364 | 1..359 | 1276 | 63 | Plus |
