Clone BO15608 Report

Search the DGRC for BO15608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG17672-RA
Protein status:BO15608.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO15608.3prime Sequence

779 bp (767 high quality bases) assembled on 2006-05-30

> BO15608.3prime
ATGGTCTAGAAAGCTTGCCGGTATCATGTTCGGCTCCTGGGCGGCGCCCG
TCGAGTACTTGGGCTTGCACACGCATCCGCTCTCCACCAGCACGTAATCC
TGGCCAGTCAGCGTCACCGGGCCGAGCGGAATGACCAGGAACAGGTAGGG
CACATAGGTTTGCGTACACTCGCCGCGGACCACATCGCACTCAGAGGATT
CGCACACTTCGAAGACCACCTGCTGCAGGAGATCGGGGAACTTCTGGACG
ATGGTCACCGGCTGGCCGGAGGTGAGGCTCACTCCGTACATGGGCGCCGT
GGTATTGTAGCGCGTCTTGCAGAGGCGCGCCGGCGTCTCGCTCTTGCACT
GCTGCGCCGGCGTGGCGTTCTTCAGCGAACGACCATAGCGACTGCTTCCG
ACGGCCTCGTTGTTCACCTCGTCGTAGGCCCTCAGCAGAGCACTGGTGGT
TATGGCTGGGTCCAGTGTGCTGGGCAATTTGCTCTGGCGGCCACGTCGCG
AGTTTCCGTTCCAGTTGGAGAATGTGCGCGCCACGGCCGCGCTCGGATAT
GGCGCATTATTGGGACCCAGGCAGTCCAGCGAGTCCGTCAGCGCATCGCC
CGATAGGTACTTCAGGCCACGCCCACCGCTGCAGCGGCTGGGGGGCGCAT
CATCGCTGCTGTAACTTGGCCACAATGCCGCGTTTGCGCAGGTGAGTGCG
ATGCTGAGGACGCAGAGAGCCGTTAGGTGTTTGACAGAACTTCTACTTAA
GCACCGGTATTCCATGTCGACTGATAACT

BO15608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 750 CG17672-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1077 765..19 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 729..542 940 100 Minus
3L 28110227 3L 13035584..13035768 384..200 925 100 Minus
3L 28110227 3L 13035918..13036098 199..19 905 100 Minus
3L 28110227 3L 13035293..13035454 543..382 810 100 Minus
3L 28110227 3L 13029292..13029327 765..730 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:58:50 has no hits.

BO15608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:59 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PE 1..750 18..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:23 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-PA 1..750 18..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:27:43 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1077 19..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:13 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1077 19..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:13 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13035295..13035452 384..541 100 -> Minus
3L 13035585..13035768 200..383 100 -> Minus
3L 13035918..13036098 19..199 100   Minus
3L 13029282..13029327 730..773 91 -> Minus
3L 13035032..13035219 542..729 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:27:43 Download gff for BO15608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022382..13022427 730..773 91 -> Minus
arm_3L 13028132..13028319 542..729 100 -> Minus
arm_3L 13028395..13028552 384..541 100 -> Minus
arm_3L 13028685..13028868 200..383 100 -> Minus
arm_3L 13029018..13029198 19..199 100   Minus

BO15608.5prime Sequence

779 bp (772 high quality bases) assembled on 2006-05-30

> BO15608.5prime
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCCGCCAGGAGCC
GAACATGATACCGGCAAGCTTTCTAGACC

BO15608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 750 CG17672-RA 1..747 17..763 3685 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1077 17..763 3705 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 53..240 940 100 Plus
3L 28110227 3L 13035584..13035768 398..582 925 100 Plus
3L 28110227 3L 13035918..13036098 583..763 875 98.9 Plus
3L 28110227 3L 13035293..13035454 239..400 810 100 Plus
3L 28110227 3L 13029292..13029327 17..52 180 100 Plus
Blast to na_te.dros performed on 2015-02-02 07:41:15 has no hits.

BO15608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:00 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PE 1..750 17..764 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:24 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-PA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:29 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1077 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:17 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1077 9..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:17 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13029282..13029327 9..52 91 -> Plus
3L 13035032..13035219 53..240 100 -> Plus
3L 13035295..13035452 241..398 100 -> Plus
3L 13035585..13035768 399..582 100 -> Plus
3L 13035918..13036098 583..763 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:29 Download gff for BO15608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022382..13022427 9..52 91 -> Plus
arm_3L 13028132..13028319 53..240 100 -> Plus
arm_3L 13028395..13028552 241..398 100 -> Plus
arm_3L 13028685..13028868 399..582 100 -> Plus
arm_3L 13029018..13029198 583..763 98   Plus

BO15608.complete Sequence

781 bp (781 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633514

> BO15608.complete
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGGCAAGCTTTCTAGACCAT

BO15608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 750 CG17672-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1077 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 53..240 940 100 Plus
3L 28110227 3L 13035584..13035768 398..582 925 100 Plus
3L 28110227 3L 13035918..13036098 583..763 905 100 Plus
3L 28110227 3L 13035293..13035454 239..400 810 100 Plus
3L 28110227 3L 13029292..13029327 17..52 180 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:18:50 has no hits.

BO15608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:21 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:37 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 319..1075 9..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:57 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 331..1077 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:21 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 319..1075 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:38 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 331..1077 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:38 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13029292..13029327 17..52 100 -> Plus
3L 13035032..13035219 53..240 100 -> Plus
3L 13035295..13035452 241..398 100 -> Plus
3L 13035585..13035768 399..582 100 -> Plus
3L 13035918..13036098 583..765 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:57 Download gff for BO15608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022392..13022427 17..52 100 -> Plus
arm_3L 13028132..13028319 53..240 100 -> Plus
arm_3L 13028395..13028552 241..398 100 -> Plus
arm_3L 13028685..13028868 399..582 100 -> Plus
arm_3L 13029018..13029198 583..765 98   Plus

BO15608.pep Sequence

Translation from 16 to 781

> BO15608.pep
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIPA
SFLDH

BO15608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 249 CG17672-PA 1..249 1..249 1314 100 Plus