Clone Sequence Records
BO15608.3prime Sequence
779 bp (767 high quality bases) assembled on 2006-05-30
> BO15608.3prime
ATGGTCTAGAAAGCTTGCCGGTATCATGTTCGGCTCCTGGGCGGCGCCCG
TCGAGTACTTGGGCTTGCACACGCATCCGCTCTCCACCAGCACGTAATCC
TGGCCAGTCAGCGTCACCGGGCCGAGCGGAATGACCAGGAACAGGTAGGG
CACATAGGTTTGCGTACACTCGCCGCGGACCACATCGCACTCAGAGGATT
CGCACACTTCGAAGACCACCTGCTGCAGGAGATCGGGGAACTTCTGGACG
ATGGTCACCGGCTGGCCGGAGGTGAGGCTCACTCCGTACATGGGCGCCGT
GGTATTGTAGCGCGTCTTGCAGAGGCGCGCCGGCGTCTCGCTCTTGCACT
GCTGCGCCGGCGTGGCGTTCTTCAGCGAACGACCATAGCGACTGCTTCCG
ACGGCCTCGTTGTTCACCTCGTCGTAGGCCCTCAGCAGAGCACTGGTGGT
TATGGCTGGGTCCAGTGTGCTGGGCAATTTGCTCTGGCGGCCACGTCGCG
AGTTTCCGTTCCAGTTGGAGAATGTGCGCGCCACGGCCGCGCTCGGATAT
GGCGCATTATTGGGACCCAGGCAGTCCAGCGAGTCCGTCAGCGCATCGCC
CGATAGGTACTTCAGGCCACGCCCACCGCTGCAGCGGCTGGGGGGCGCAT
CATCGCTGCTGTAACTTGGCCACAATGCCGCGTTTGCGCAGGTGAGTGCG
ATGCTGAGGACGCAGAGAGCCGTTAGGTGTTTGACAGAACTTCTACTTAA
GCACCGGTATTCCATGTCGACTGATAACT
BO15608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 750 | CG17672-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1077 | 765..19 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 729..542 | 940 | 100 | Minus |
3L | 28110227 | 3L | 13035584..13035768 | 384..200 | 925 | 100 | Minus |
3L | 28110227 | 3L | 13035918..13036098 | 199..19 | 905 | 100 | Minus |
3L | 28110227 | 3L | 13035293..13035454 | 543..382 | 810 | 100 | Minus |
3L | 28110227 | 3L | 13029292..13029327 | 765..730 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:58:50 has no hits.
BO15608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:51:59 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PE | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:23 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:27:43 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1077 | 19..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:13 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1077 | 19..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:13 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13035295..13035452 | 384..541 | 100 | -> | Minus |
3L | 13035585..13035768 | 200..383 | 100 | -> | Minus |
3L | 13035918..13036098 | 19..199 | 100 | | Minus |
3L | 13029282..13029327 | 730..773 | 91 | -> | Minus |
3L | 13035032..13035219 | 542..729 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:27:43 Download gff for
BO15608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022382..13022427 | 730..773 | 91 | -> | Minus |
arm_3L | 13028132..13028319 | 542..729 | 100 | -> | Minus |
arm_3L | 13028395..13028552 | 384..541 | 100 | -> | Minus |
arm_3L | 13028685..13028868 | 200..383 | 100 | -> | Minus |
arm_3L | 13029018..13029198 | 19..199 | 100 | | Minus |
BO15608.5prime Sequence
779 bp (772 high quality bases) assembled on 2006-05-30
> BO15608.5prime
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCCGCCAGGAGCC
GAACATGATACCGGCAAGCTTTCTAGACC
BO15608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 750 | CG17672-RA | 1..747 | 17..763 | 3685 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1077 | 17..763 | 3705 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 53..240 | 940 | 100 | Plus |
3L | 28110227 | 3L | 13035584..13035768 | 398..582 | 925 | 100 | Plus |
3L | 28110227 | 3L | 13035918..13036098 | 583..763 | 875 | 98.9 | Plus |
3L | 28110227 | 3L | 13035293..13035454 | 239..400 | 810 | 100 | Plus |
3L | 28110227 | 3L | 13029292..13029327 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:41:15 has no hits.
BO15608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:00 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PE | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:24 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:29 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1077 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:17 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1077 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:17 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13029282..13029327 | 9..52 | 91 | -> | Plus |
3L | 13035032..13035219 | 53..240 | 100 | -> | Plus |
3L | 13035295..13035452 | 241..398 | 100 | -> | Plus |
3L | 13035585..13035768 | 399..582 | 100 | -> | Plus |
3L | 13035918..13036098 | 583..763 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:29 Download gff for
BO15608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022382..13022427 | 9..52 | 91 | -> | Plus |
arm_3L | 13028132..13028319 | 53..240 | 100 | -> | Plus |
arm_3L | 13028395..13028552 | 241..398 | 100 | -> | Plus |
arm_3L | 13028685..13028868 | 399..582 | 100 | -> | Plus |
arm_3L | 13029018..13029198 | 583..763 | 98 | | Plus |
BO15608.complete Sequence
781 bp (781 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633514
> BO15608.complete
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGGCAAGCTTTCTAGACCAT
BO15608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 750 | CG17672-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1077 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 53..240 | 940 | 100 | Plus |
3L | 28110227 | 3L | 13035584..13035768 | 398..582 | 925 | 100 | Plus |
3L | 28110227 | 3L | 13035918..13036098 | 583..763 | 905 | 100 | Plus |
3L | 28110227 | 3L | 13035293..13035454 | 239..400 | 810 | 100 | Plus |
3L | 28110227 | 3L | 13029292..13029327 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:18:50 has no hits.
BO15608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:21 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:37 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 319..1075 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:57 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 331..1077 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:21 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 319..1075 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:38 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 331..1077 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:38 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13029292..13029327 | 17..52 | 100 | -> | Plus |
3L | 13035032..13035219 | 53..240 | 100 | -> | Plus |
3L | 13035295..13035452 | 241..398 | 100 | -> | Plus |
3L | 13035585..13035768 | 399..582 | 100 | -> | Plus |
3L | 13035918..13036098 | 583..765 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:57 Download gff for
BO15608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022392..13022427 | 17..52 | 100 | -> | Plus |
arm_3L | 13028132..13028319 | 53..240 | 100 | -> | Plus |
arm_3L | 13028395..13028552 | 241..398 | 100 | -> | Plus |
arm_3L | 13028685..13028868 | 399..582 | 100 | -> | Plus |
arm_3L | 13029018..13029198 | 583..765 | 98 | | Plus |
BO15608.pep Sequence
Translation from 16 to 781
> BO15608.pep
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIPA
SFLDH
BO15608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 249 | CG17672-PA | 1..249 | 1..249 | 1314 | 100 | Plus |