Clone Sequence Records
BO15609.complete Sequence
1351 bp assembled on 2010-04-09
GenBank Submission: KX794845
> BO15609.complete
GAAGTTATCAGTCGACATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACGCAAGCTTTCTAGACCA
T
BO15609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 1401 | CG1910-PC | 82..1398 | 17..1333 | 6585 | 100 | Plus |
| CG1910-RD | 1320 | CG1910-PD | 1..1317 | 17..1333 | 6585 | 100 | Plus |
| CG1910-RA | 1470 | CG1910-PA | 151..1467 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 2628 | CG1910-RC | 127..1443 | 17..1333 | 6585 | 100 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 197..1513 | 17..1333 | 6585 | 100 | Plus |
| CG1910-RA | 3015 | CG1910-RA | 514..1830 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749578..31750592 | 260..1274 | 5060 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31749276..31749522 | 17..263 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 31750644..31750709 | 1268..1333 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 749..778 | 114 | 86.7 | Plus |
BO15609.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:19 Download gff for
BO15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RD | 171..1487 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:04 Download gff for
BO15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1830 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:47 Download gff for
BO15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1830 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:47 Download gff for
BO15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31749276..31749521 | 17..262 | 100 | -> | Plus |
| 3R | 31749581..31750586 | 263..1268 | 100 | -> | Plus |
| 3R | 31750645..31750709 | 1269..1335 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:04 Download gff for
BO15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27574998..27575243 | 17..262 | 100 | -> | Plus |
| arm_3R | 27575303..27576308 | 263..1268 | 100 | -> | Plus |
| arm_3R | 27576367..27576431 | 1269..1335 | 97 | | Plus |
BO15609.5prime Sequence
1186 bp (896 high quality bases) assembled on 2010-02-20
> BO15609.5prime
ATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCAC
TCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCA
AAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAG
GGACGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGA
GCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAG
CTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAG
AAATATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGA
AGACGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATC
TTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCA
ATATCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGA
GCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGA
CTGCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGAT
GAGACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGA
TGACGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTT
TGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCT
ATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGA
CACACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAAGCAGCAG
CAAAGACTACGGAGTCTAGCAATGATGTGGTGGAGGTGGCCACAGAGGGC
AAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAACCAAGGGAGCCGAAAGC
ACTGTAAAGTCCGCGGAAGAACTTTAGGAAACCCACCCCCGGGGTGGGGA
CTGAACCCAAAGGAAACCCCCCGCCACCAAAAAAGAACCTTATCAGGGTT
GGGGGAATCCTGCGGAACCCCAGGGGGGGGAAAAAAAAAAATAAGGAATG
AAAAACGGCCCCCCCCCCCCGTTCCCCTTTTTTGTGGTTTTTCCTCCCCC
CCCCCCCCCCCTCCCCAAAGGGGGTGTTTTCCCCCA
BO15609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 2628 | CG1910-RC | 127..1130 | 1..1004 | 4810 | 98.7 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 197..1200 | 1..1004 | 4810 | 98.7 | Plus |
| CG1910-RA | 3015 | CG1910-RA | 514..1517 | 1..1004 | 4810 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749578..31750318 | 244..983 | 3550 | 98.9 | Plus |
| 3R | 32079331 | 3R | 31749276..31749522 | 1..247 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 19:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 733..762 | 114 | 86.7 | Plus |
BO15609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:03:18 Download gff for
BO15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RD | 171..1154 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:21:52 Download gff for
BO15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1497 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:34 Download gff for
BO15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1497 | 1..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:34 Download gff for
BO15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31749276..31749521 | 1..246 | 100 | -> | Plus |
| 3R | 31749581..31750305 | 247..970 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:21:52 Download gff for
BO15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27574998..27575243 | 1..246 | 100 | -> | Plus |
| arm_3R | 27575303..27576027 | 247..970 | 99 | == | Plus |
BO15609.3prime Sequence
840 bp (677 high quality bases) assembled on 2010-02-20
> BO15609.3prime
CGTCGCCCACCTCAGGCGGAACTGTTGACGATCTTGGGCTCACCATTTAC
ATTAATTTCGGCCTTCTTGACCTCGCATATTTCCTGTGGTTCCTTTGCAG
GACTGTCGGCAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTG
ACATCATTGGATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGC
GCTCTCATCCGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAA
CCTTGCTAGGCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACC
ACCACGGTGCTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTC
GGCTTCCTTGGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCT
CTGTGGCCACTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCT
GCTTCTGTTTCTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTAC
TTGAGCGGTGTCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTT
CTGGTGTGGGCTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACT
GCTGCTGCATGTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAA
TGCCTTTTCTTTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTT
CGTCCACATCCCTAACAAAAGCAGGTTCTTTATAGTGCACCGGCAGTCTC
CTGTACCGGCTCCATTCTCCGACGTTTCTCCGTTCGACTTGAGGGGGTTC
TTCACCTTTTGGAACCCCTTCCCTTTGAATTCCCAGAGTC
BO15609.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 2628 | CG1910-RC | 590..1418 | 836..3 | 3865 | 98 | Minus |
| CG1910-RD | 2698 | CG1910-RD | 660..1488 | 836..3 | 3865 | 98 | Minus |
| CG1910-RA | 3015 | CG1910-RA | 977..1805 | 836..3 | 3865 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749798..31750592 | 836..38 | 3600 | 97.9 | Minus |
Blast to na_te.dros performed 2015-02-12 12:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 563..534 | 114 | 86.7 | Minus |
BO15609.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:03:17 Download gff for
BO15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RD | 630..1463 | 1..840 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 08:39:54 Download gff for
BO15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 973..1806 | 1..840 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:07 Download gff for
BO15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 973..1806 | 1..840 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:07 Download gff for
BO15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31749794..31750586 | 44..840 | 97 | -> | Minus |
| 3R | 31750645..31750676 | 11..43 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 08:39:54 Download gff for
BO15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27575516..27576308 | 44..840 | 97 | -> | Minus |
| arm_3R | 27576367..27576398 | 11..43 | 96 | -> | Minus |
BO15609.pep Sequence
Translation from 16 to 1351
> BO15609.pep
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCNASFLDH
BO15609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-PC | 466 | CG1910-PC | 28..466 | 1..439 | 2186 | 100 | Plus |
| CG1910-PD | 439 | CG1910-PD | 1..439 | 1..439 | 2186 | 100 | Plus |
| CG1910-PA | 489 | CG1910-PA | 51..489 | 1..439 | 2186 | 100 | Plus |
| PPP4R2r-PD | 522 | CG2890-PD | 127..503 | 56..434 | 203 | 23.3 | Plus |
| PPP4R2r-PC | 609 | CG2890-PC | 214..590 | 56..434 | 203 | 23.3 | Plus |
