BO15612.complete Sequence
1309 bp (1309 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633516
> BO15612.complete
GAAGTTATCAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCT
TTCTGCTGCTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCA
TCTGACTACGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGA
GTCCCCGAATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTG
TAAATGCGGAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCC
GTTCACAACATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCC
GCTGGGACAAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCA
ACCAAACGCTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGAC
GATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACA
GCTGGACAGCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTC
GCGTCCGCCGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTAC
TTCGATCCCGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAA
TAACCAGCAGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCG
ATGGCGGTGGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACC
GGAGGAGCAGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGG
TCCCATCCGGTACGAGGGTCCTCCCACTCCCTGTCCCGCCAAGGTAGAGT
ACGCTACTCCCGTCTTCGCTAAGAACTACCAAGGCGCCTGGCGTTATGTG
GTCCAGATTCCCTATGAGGGCTACTTCACCCAGACGGTGGAGGTGACGCG
TTGCATTCAGGCACGCTGTCACTACCTGGACGGCGGTTGCTTGTCGTCAC
CACGCTGGGTAAGCCTGTTGGTGGCGGAGATCTTCTACCCCAATGCGGAG
GACACAGTGCCCACCAGCTCGACCACCACTCAGGCCCCTTCTGTGCAGGA
TTTCCAGGCCTACCAGCAGTACCTGCAGAAGAGGGCAGGCGTGGCTACCG
CCTCCGACGGAACCTCGTCTGGAGCAGCCGGCCCCGCGGCGCAGGTGGAC
GCCCACTGCGATGGACACGATGAACTGGGCTGCTTCCAGGTGCGTCTCTA
CTACGACTGGTTCCTCATCCCCGGCTCTTGCAAGTGCTGGCGCCCGGACT
ACTTCGCCAAGTACGTGCGCCGGAAGTCGGTGGCCGAGTTGGCAAGCTTT
CTAGACCAT
BO15612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz6-RA | 1278 | CG9196-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz6-RA | 1647 | CG9196-RA | 118..1392 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24759584..24760211 | 664..1291 | 3140 | 100 | Plus |
| 2R | 25286936 | 2R | 24758857..24759183 | 337..663 | 1635 | 100 | Plus |
| 2R | 25286936 | 2R | 24758497..24758796 | 37..336 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:39:58 has no hits.
BO15612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:13 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9196-RA | 1..1278 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:15 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9196-RA | 109..1394 | 10..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:01 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 118..1392 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:13 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9196-RA | 109..1394 | 10..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:49 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 118..1392 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:49 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24757495..24757515 | 17..37 | 100 | -> | Plus |
| 2R | 24758498..24758796 | 38..336 | 100 | -> | Plus |
| 2R | 24758857..24759183 | 337..663 | 100 | -> | Plus |
| 2R | 24759584..24760211 | 664..1293 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:01 Download gff for
BO15612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20645018..20645038 | 17..37 | 100 | -> | Plus |
| arm_2R | 20646021..20646319 | 38..336 | 100 | -> | Plus |
| arm_2R | 20646380..20646706 | 337..663 | 100 | -> | Plus |
| arm_2R | 20647107..20647734 | 664..1293 | 99 | | Plus |
BO15612.pep Sequence
Translation from 16 to 1309
> BO15612.pep
MDYRLVLKILSFLLLAQLGFSQPQQQSPSDYGEEQPPEGYYAFVESPNAV
PPKVRPPPYTFVNAECKDVAAGKKSAVSVHNICGDLNKGQIPKNPLGQNV
LGEPYPFELIRNQTLKFLSKTLPVLKADDTLPKVTQIIRDEPVEQLDSNN
IDRPYPAGGSTRVRRSLPEGVESNEYSYFDPALDEEEQHKQRDRNNQQRR
AAEERKPRKFCDGGGVFCTLYRAIQGDTGGAAPATPTAERREEVGPIRYE
GPPTPCPAKVEYATPVFAKNYQGAWRYVVQIPYEGYFTQTVEVTRCIQAR
CHYLDGGCLSSPRWVSLLVAEIFYPNAEDTVPTSSTTTQAPSVQDFQAYQ
QYLQKRAGVATASDGTSSGAAGPAAQVDAHCDGHDELGCFQVRLYYDWFL
IPGSCKCWRPDYFAKYVRRKSVAELASFLDH
BO15612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz6-PA | 425 | CG9196-PA | 1..425 | 1..425 | 2286 | 100 | Plus |
