BO15619.complete Sequence
1105 bp (1105 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633518
> BO15619.complete
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTC
AAGTCACTGGATGTCATCGAGACGAACACCCTCACCAAGCTAGTCATCCA
GGTCACCGCCCAGACTCTGGCCTACAGCAGCTCGTGTATCAATCCGCTGC
TCTACGCCTTCCTCTCCGAGAATTTCCGGAAGGCCTTCTACAAGGCCGTT
AACTGCTCCTCTCGATACCAGAACTACACATCTGATTTGCCGCCGCCGCG
CAAGACGTCCTGTGCCAGGACCTCCACCACTGGACTCGCAAGCTTTCTAG
ACCAT
BO15619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RC | 1074 | CG10001-PC | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| AstA-R2-RA | 1074 | CG10001-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| AstA-R2-RB | 1053 | CG10001-PB | 1..979 | 17..995 | 4895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RC | 1994 | CG10001-RC | 756..1828 | 15..1087 | 5365 | 100 | Plus |
| AstA-R2-RA | 2273 | CG10001-RA | 756..1828 | 15..1087 | 5365 | 100 | Plus |
| AstA-R2-RB | 2077 | CG10001-RB | 756..1736 | 15..995 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28743484..28744027 | 558..15 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 28740706..28740985 | 835..556 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 28740471..28740633 | 995..833 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 28737554..28737648 | 1087..993 | 475 | 100 | Minus |
| X | 23542271 | X | 3655852..3655904 | 393..445 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:22 has no hits.
BO15619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:15 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 1..1074 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:20 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 102..1183 | 10..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:29 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 758..1828 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:16 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 102..1183 | 10..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:29 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R2-RA | 758..1828 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:29 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28737552..28737646 | 995..1089 | 97 | <- | Minus |
| 3R | 28740472..28740630 | 836..994 | 100 | <- | Minus |
| 3R | 28740706..28740984 | 557..835 | 100 | <- | Minus |
| 3R | 28743486..28744025 | 17..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:29 Download gff for
BO15619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24566194..24566352 | 836..994 | 100 | <- | Minus |
| arm_3R | 24563274..24563368 | 995..1089 | 97 | <- | Minus |
| arm_3R | 24566428..24566706 | 557..835 | 100 | <- | Minus |
| arm_3R | 24569208..24569747 | 17..556 | 100 | | Minus |
BO15619.pep Sequence
Translation from 16 to 1105
> BO15619.pep
MENTTMLANISLNATRNEENITSFFTDEEWLAINGTLPWIVGFFFGVIAI
TGFFGNLLVILVVVFNNNMRSTTNLMIVNLAAADLMFVILCIPFTATDYM
VYYWPYGRFWCRSVQYLIVVTAFASIYTLVLMSIDRFLAVVHPIRSRMMR
TENITLIAIVTLWIVVLVVSVPVAFTHDVVVDYDAKKNITYGMCTFTTND
FLGPRTYQVTFFISSYLLPLMIISGLYMRMIMRLWRQGTGVRMSKESQRG
RKRVTRLVVVVVIAFASLWLPVQLILLLKSLDVIETNTLTKLVIQVTAQT
LAYSSSCINPLLYAFLSENFRKAFYKAVNCSSRYQNYTSDLPPPRKTSCA
RTSTTGLASFLDH
BO15619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-PC | 357 | CG10001-PC | 1..357 | 1..357 | 1826 | 100 | Plus |
| AstA-R2-PA | 357 | CG10001-PA | 1..357 | 1..357 | 1826 | 100 | Plus |
| AstA-R2-PB | 350 | CG10001-PB | 1..338 | 1..339 | 1661 | 97.1 | Plus |
| AstA-R1-PD | 394 | CG2872-PD | 63..384 | 27..359 | 818 | 49.3 | Plus |
| AstA-R1-PB | 394 | CG2872-PB | 63..384 | 27..359 | 818 | 49.3 | Plus |
