Clone Sequence Records
BO15623.3prime Sequence
509 bp (509 high quality bases) assembled on 2006-06-02
> BO15623.3prime
ATGGTCTAGAAAGCTTGCGCGCACCACCTTAATGTCGATGGTGAAGCAGC
AGCGCTTCTGGGAGACGGGATCCTTCAGAGCCCAACGGATGGTGTACGGA
CTCAGGGGAAACTTGGCCTCGATGGGCACCAGGGTGGTGTAGGTCTGTTT
CACTCCGGATCTCACGGGGCAGGGTGTGTACTTGCAGGCGGCGCTGTCCA
AGGTGAGCAGGGGCAGCTCCACATTCTCGCTCTTGGCCCAGCCCAAGCTG
GCTACCAGGGTGTCGGCATCGAAGTTCGGCGTGAAGTCGAAGCTCATCTC
ACTGTTGTGCTTCCGGCGGATATTGCAAGCCGCATTGTTGAGGGCCTCCG
GACATGGCGAGACTCTCACCTGCTGGATCGTACAGGTGTCTACGCTATCC
GGACATGGTTCGAAGTTGACCACCTCGGCGGAAGCGGATGACGAGATCAG
GACGATGGCGATGGCGACAGCCTGCAGCGAGCTAGGACGCAACATGTCGA
CTGATAACT
BO15623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11314-PA | 480 | CG11314-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
CG11315-PA | 474 | CG11315-RA | 192..284 | 298..206 | 315 | 93.5 | Minus |
CG11315-PB | 393 | CG11315-RB | 192..284 | 298..206 | 315 | 93.5 | Minus |
CG11315-PA | 474 | CG11315-RA | 385..471 | 105..19 | 260 | 91.9 | Minus |
CG11315-PB | 393 | CG11315-RB | 313..390 | 96..19 | 240 | 92.3 | Minus |
CG11315-PA | 474 | CG11315-RA | 301..338 | 189..152 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..507 | 496..19 | 2390 | 100 | Minus |
Npc2g-RA | 659 | CG11314-RA | 30..507 | 496..19 | 2390 | 100 | Minus |
Npc2h-RC | 597 | CG11315-RC | 78..501 | 442..19 | 875 | 81.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744757..30745234 | 19..496 | 2390 | 100 | Plus |
3R | 32079331 | 3R | 30745790..30746213 | 19..442 | 875 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:06:18 has no hits.
BO15623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:07 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:34 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:47 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..507 | 19..500 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:30 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..507 | 19..500 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:30 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744757..30745239 | 19..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:47 Download gff for
BO15623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570479..26570961 | 19..500 | 99 | | Plus |
BO15623.5prime Sequence
509 bp (509 high quality bases) assembled on 2006-05-30
> BO15623.5prime
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCGCAAGCT
TTCTAGACC
BO15623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11314-PA | 480 | CG11314-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG11315-PA | 474 | CG11315-RA | 192..284 | 214..306 | 315 | 93.5 | Plus |
CG11315-PB | 393 | CG11315-RB | 192..284 | 214..306 | 315 | 93.5 | Plus |
CG11315-PA | 474 | CG11315-RA | 385..471 | 407..493 | 260 | 91.9 | Plus |
CG11315-PB | 393 | CG11315-RB | 313..390 | 416..493 | 240 | 92.3 | Plus |
CG11315-PA | 474 | CG11315-RA | 301..338 | 323..360 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..507 | 16..493 | 2390 | 100 | Plus |
Npc2g-RA | 659 | CG11314-RA | 30..507 | 16..493 | 2390 | 100 | Plus |
Npc2h-RC | 597 | CG11315-RC | 78..501 | 70..493 | 875 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744757..30745234 | 493..16 | 2390 | 100 | Minus |
3R | 32079331 | 3R | 30745790..30746213 | 493..70 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:07:48 has no hits.
BO15623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:08 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:35 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:11 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..507 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:07 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..507 | 12..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:07 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744757..30745239 | 12..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:11 Download gff for
BO15623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570479..26570961 | 12..493 | 99 | | Minus |
BO15623.complete Sequence
511 bp (511 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633519
> BO15623.complete
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCGCAAGCT
TTCTAGACCAT
BO15623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 480 | CG11314-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
Npc2g-RA | 480 | CG11314-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Npc2h-RC | 474 | CG11315-PC | 48..471 | 70..493 | 875 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..507 | 16..493 | 2390 | 100 | Plus |
Npc2g-RA | 659 | CG11314-RA | 30..507 | 16..493 | 2390 | 100 | Plus |
Npc2h-RC | 597 | CG11315-RC | 78..501 | 70..493 | 875 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744757..30745234 | 493..16 | 2390 | 100 | Minus |
3R | 32079331 | 3R | 30745790..30746213 | 493..70 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:29 has no hits.
BO15623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:22 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:40 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-RA | 23..505 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:52 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 36..507 | 22..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:22 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-RA | 23..505 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:33 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 36..507 | 22..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:33 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744754..30745228 | 22..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:52 Download gff for
BO15623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570476..26570950 | 22..495 | 99 | | Minus |
BO15623.pep Sequence
Translation from 16 to 511
> BO15623.pep
MLRPSSLQAVAIAIVLISSSASAEVVNFEPCPDSVDTCTIQQVRVSPCPE
ALNNAACNIRRKHNSEMSFDFTPNFDADTLVASLGWAKSENVELPLLTLD
SAACKYTPCPVRSGVKQTYTTLVPIEAKFPLSPYTIRWALKDPVSQKRCC
FTIDIKVVRASFLDH
BO15623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-PB | 159 | CG11314-PB | 1..159 | 1..159 | 829 | 100 | Plus |
Npc2g-PA | 159 | CG11314-PA | 1..159 | 1..159 | 829 | 100 | Plus |
Npc2h-PC | 157 | CG11315-PC | 1..157 | 1..159 | 643 | 78 | Plus |
Npc2h-PA | 157 | CG11315-PA | 1..157 | 1..159 | 643 | 78 | Plus |
Npc2h-PB | 130 | CG11315-PB | 1..130 | 1..159 | 497 | 65.4 | Plus |