Clone BO15623 Report

Search the DGRC for BO15623

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2g-RA
Protein status:BO15623.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO15623.3prime Sequence

509 bp (509 high quality bases) assembled on 2006-06-02

> BO15623.3prime
ATGGTCTAGAAAGCTTGCGCGCACCACCTTAATGTCGATGGTGAAGCAGC
AGCGCTTCTGGGAGACGGGATCCTTCAGAGCCCAACGGATGGTGTACGGA
CTCAGGGGAAACTTGGCCTCGATGGGCACCAGGGTGGTGTAGGTCTGTTT
CACTCCGGATCTCACGGGGCAGGGTGTGTACTTGCAGGCGGCGCTGTCCA
AGGTGAGCAGGGGCAGCTCCACATTCTCGCTCTTGGCCCAGCCCAAGCTG
GCTACCAGGGTGTCGGCATCGAAGTTCGGCGTGAAGTCGAAGCTCATCTC
ACTGTTGTGCTTCCGGCGGATATTGCAAGCCGCATTGTTGAGGGCCTCCG
GACATGGCGAGACTCTCACCTGCTGGATCGTACAGGTGTCTACGCTATCC
GGACATGGTTCGAAGTTGACCACCTCGGCGGAAGCGGATGACGAGATCAG
GACGATGGCGATGGCGACAGCCTGCAGCGAGCTAGGACGCAACATGTCGA
CTGATAACT

BO15623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11314-PA 480 CG11314-RA 1..477 495..19 2385 100 Minus
CG11315-PA 474 CG11315-RA 192..284 298..206 315 93.5 Minus
CG11315-PB 393 CG11315-RB 192..284 298..206 315 93.5 Minus
CG11315-PA 474 CG11315-RA 385..471 105..19 260 91.9 Minus
CG11315-PB 393 CG11315-RB 313..390 96..19 240 92.3 Minus
CG11315-PA 474 CG11315-RA 301..338 189..152 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..507 496..19 2390 100 Minus
Npc2g-RA 659 CG11314-RA 30..507 496..19 2390 100 Minus
Npc2h-RC 597 CG11315-RC 78..501 442..19 875 81.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744757..30745234 19..496 2390 100 Plus
3R 32079331 3R 30745790..30746213 19..442 875 80.4 Plus
Blast to na_te.dros performed on 2015-02-10 22:06:18 has no hits.

BO15623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:07 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:34 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:47 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 19..500 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:30 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 19..500 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:30 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30744757..30745239 19..500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:47 Download gff for BO15623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570479..26570961 19..500 99   Plus

BO15623.5prime Sequence

509 bp (509 high quality bases) assembled on 2006-05-30

> BO15623.5prime
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCGCAAGCT
TTCTAGACC

BO15623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11314-PA 480 CG11314-RA 1..477 17..493 2385 100 Plus
CG11315-PA 474 CG11315-RA 192..284 214..306 315 93.5 Plus
CG11315-PB 393 CG11315-RB 192..284 214..306 315 93.5 Plus
CG11315-PA 474 CG11315-RA 385..471 407..493 260 91.9 Plus
CG11315-PB 393 CG11315-RB 313..390 416..493 240 92.3 Plus
CG11315-PA 474 CG11315-RA 301..338 323..360 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..507 16..493 2390 100 Plus
Npc2g-RA 659 CG11314-RA 30..507 16..493 2390 100 Plus
Npc2h-RC 597 CG11315-RC 78..501 70..493 875 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744757..30745234 493..16 2390 100 Minus
3R 32079331 3R 30745790..30746213 493..70 875 80.4 Minus
Blast to na_te.dros performed on 2015-02-12 00:07:48 has no hits.

BO15623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:08 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:35 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:11 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 12..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:07 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 12..493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:07 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30744757..30745239 12..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:11 Download gff for BO15623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570479..26570961 12..493 99   Minus

BO15623.complete Sequence

511 bp (511 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633519

> BO15623.complete
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCGCAAGCT
TTCTAGACCAT

BO15623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 480 CG11314-PB 1..477 17..493 2385 100 Plus
Npc2g-RA 480 CG11314-PA 1..477 17..493 2385 100 Plus
Npc2h-RC 474 CG11315-PC 48..471 70..493 875 80.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..507 16..493 2390 100 Plus
Npc2g-RA 659 CG11314-RA 30..507 16..493 2390 100 Plus
Npc2h-RC 597 CG11315-RC 78..501 70..493 875 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744757..30745234 493..16 2390 100 Minus
3R 32079331 3R 30745790..30746213 493..70 875 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:29 has no hits.

BO15623.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:22 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:40 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 23..505 12..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:52 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 36..507 22..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:22 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 23..505 12..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:33 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 36..507 22..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:33 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30744754..30745228 22..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:52 Download gff for BO15623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570476..26570950 22..495 99   Minus

BO15623.pep Sequence

Translation from 16 to 511

> BO15623.pep
MLRPSSLQAVAIAIVLISSSASAEVVNFEPCPDSVDTCTIQQVRVSPCPE
ALNNAACNIRRKHNSEMSFDFTPNFDADTLVASLGWAKSENVELPLLTLD
SAACKYTPCPVRSGVKQTYTTLVPIEAKFPLSPYTIRWALKDPVSQKRCC
FTIDIKVVRASFLDH

BO15623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-PB 159 CG11314-PB 1..159 1..159 829 100 Plus
Npc2g-PA 159 CG11314-PA 1..159 1..159 829 100 Plus
Npc2h-PC 157 CG11315-PC 1..157 1..159 643 78 Plus
Npc2h-PA 157 CG11315-PA 1..157 1..159 643 78 Plus
Npc2h-PB 130 CG11315-PB 1..130 1..159 497 65.4 Plus