Clone Sequence Records
BO15625.3prime Sequence
870 bp (772 high quality bases) assembled on 2006-06-02
> BO15625.3prime
ATGGTCTAGAAAGCTTGCGCTAGACCACAAATCTCCCGATTTTTGGTTGC
CAGGAGCTCTGAAACCGCGAACTATGACCTCGGCCTGCCACCAACCGCTG
GTTTCATTTGCTGCTTTCAAAACGTCATGCTCTTCGTTGGTCTGGCTAAC
GTCTTCCCCAGATTTATCCAGATTCCGCACGCCAAGATCGTGGTAAATAT
CCATCTCCTTGCAGCAGCGTAATTCATTCGGTGTGTTTTCACTGCAATGC
AGTAGATGCAGGTGTATGTTCTTGCAGCTGCGCGGAAGTTGGCTTAATAT
ATGCTTTGGGATTAGATTAAAGGAGTCACAATGGGATCCTTGGGGTCGAT
CGGAGTCTGTAAGGAGCTCCATTTCTAGAAACACGTTGGTGACTTTTAGT
TCGGTGGAGAATAGCCTGTACAGCTCCTCGCAGGTGAGCAGGCGGAGCAG
CGCCTGGTTGATGCGACCTTCGGGCAGAGCATGGTGCTCGCAATAGTGAT
CTCTGGATATGGAATCATGTGGTATGTGCAGAGTATAGGCCTCCGAGGGC
ATGAACATATTGTTGCCAAAAAGAAATCGCAGGCTCTTCACTTCAGAGCT
CCTGAAGGCTTGTCGGATGATCTCTCTCATGTCACTAATAGATTCCTTGG
TGGCCTTTGCCTTAGAGCGCTGCTGGTTGCGTTGGTAATGAGCAAAGGAC
TCCTGATCCTTGGATTCTCCCGATTCATCAGCATCTGACCATTTATCCAC
ATAATATTTGTATGTTTTGTACACGAAAGGGATTTGCCGGCGTTGATAGA
GACAGAAGTCCAGGATGCCATTCACGAACTCCGCTGTTGTCCCACTGGTC
AGAACCTCAATGTTATCCAG
BO15625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-PA | 888 | CG13599-RA | 34..885 | 870..19 | 4185 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-RA | 1029 | CG13599-RA | 108..959 | 870..19 | 4215 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23932054..23932658 | 623..19 | 3025 | 100 | Minus |
3R | 32079331 | 3R | 23931746..23931994 | 870..622 | 1200 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:10:48 has no hits.
BO15625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:10 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-PA | 34..888 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:36 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-PA | 34..888 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:14 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 108..966 | 10..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:37 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 108..966 | 10..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:37 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23931746..23931994 | 622..870 | 98 | -> | Minus |
3R | 23932056..23932665 | 10..621 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:14 Download gff for
BO15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19757468..19757716 | 622..870 | 98 | -> | Minus |
arm_3R | 19757778..19758387 | 10..621 | 99 | | Minus |
BO15625.5prime Sequence
918 bp (816 high quality bases) assembled on 2006-05-30
> BO15625.5prime
GAAGTTATCAGTCGACATGGATCAAAATGTCAAGAATGTTGATCTTAAAC
TGGATAACATTGAGGTTCTGACCAGTGGGACAACAGCGGAGTTCGTGAAT
GGCATCCTGGACTTCTTGCTCTATCAACGCCGGCAAATCCCCTTCGTGTA
CAAAACATACAAATATTATGTGGATAAATGGTCAGATGCTGATGAATCGG
GAGAATCCAAGGATCAGGAGTCCTTTGCTCATTACCAACGCAACCAGCAG
CGCTCTAAGGCAAAGGCCACCAAGGAATCTATTAGTGACATGAGAGAGAT
CATCCGACAAGCCTTCAGGAGCTCTGAAGTGAAGAGCCTGCGATTTCTTT
TTGGCAACAATATGTTCATGCCCTCGGAGGCCTATACTCTGCACATACCA
CATGATTCCATATCCAGAGATCACTATTGCGAGCACCATGCTCTGCCCGA
AGGTCGCATCAACCAGGCGCTGCTCCGCCTGCTCACCTGCGAGGAGCTGT
ACAGGCTATTCTCCACCGAACTAAAAGTCACCAACGTGTTTCTAGAAATG
GAGCTCCTTACAGACTCCGATCGACCCCAAGGATCCCATTGTGACTCCTT
TAATCTAATCCCAAAGCATATATTAAGCCAACTTCCGCGCAGCTGCAAGA
ACATACACCTGCATCTACTGCATTGCAGTGAAAACACACCGAATGAATTA
CGCTGCTGCAAGGAGATGGATATTTACCACGATCTTGGCGTGCGGAATCT
GGATAAATCTGGGGAAGACGTTAGCCAGACCAACGAAGAGCATGACGTTT
TGAAAGCAGCAAATGAAAACAGCGGGTGGTGGCAGGCCGAGGTCATAGTT
CGCGGTTTCAGAGCTCCTGNCAACCAAAAATCGGGAGATTTGTGGTCTAG
CGCAAGCTTTCTAGACAT
BO15625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-PA | 888 | CG13599-RA | 1..885 | 17..901 | 4356 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-RA | 1029 | CG13599-RA | 75..959 | 17..901 | 4384 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23932054..23932658 | 297..901 | 2984 | 99.5 | Plus |
3R | 32079331 | 3R | 23931713..23931994 | 17..298 | 1410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:10:48 has no hits.
BO15625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:11 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-PA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:38 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-PA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:42 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 75..966 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:50 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 75..966 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:50 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23931713..23931994 | 17..298 | 100 | -> | Plus |
3R | 23932056..23932665 | 299..910 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:42 Download gff for
BO15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19757435..19757716 | 17..298 | 100 | -> | Plus |
arm_3R | 19757778..19758387 | 299..910 | 98 | | Plus |
BO15625.complete Sequence
919 bp (919 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633520
> BO15625.complete
GAAGTTATCAGTCGACATGGATCAAAATGTCAAGAATGTTGATCTTAAAC
TGGATAACATTGAGGTTCTGACCAGTGGGACAACAGCGGAGTTCGTGAAT
GGCATCCTGGACTTCTTGCTCTATCAACGCCGGCAAATCCCCTTCGTGTA
CAAAACATACAAATATTATGTGGATAAATGGTCAGATGCTGATGAATCGG
GAGAATCCAAGGATCAGGAGTCCTTTGCTCATTACCAACGCAACCAGCAG
CGCTCTAAGGCAAAGGCCACCAAGGAATCTATTAGTGACATGAGAGAGAT
CATCCGACAAGCCTTCAGGAGCTCTGAAGTGAAGAGCCTGCGATTTCTTT
TTGGCAACAATATGTTCATGCCCTCGGAGGCCTATACTCTGCACATACCA
CATGATTCCATATCCAGAGATCACTATTGCGAGCACCATGCTCTGCCCGA
AGGTCGCATCAACCAGGCGCTGCTCCGCCTGCTCACCTGCGAGGAGCTGT
ACAGGCTATTCTCCACCGAACTAAAAGTCACCAACGTGTTTCTAGAAATG
GAGCTCCTTACAGACTCCGATCGACCCCAAGGATCCCATTGTGACTCCTT
TAATCTAATCCCAAAGCATATATTAAGCCAACTTCCGCGCAGCTGCAAGA
ACATACACCTGCATCTACTGCATTGCAGTGAAAACACACCGAATGAATTA
CGCTGCTGCAAGGAGATGGATATTTACCACGATCTTGGCGTGCGGAATCT
GGATAAATCTGGGGAAGACGTTAGCCAGACCAACGAAGAGCATGACGTTT
TGAAAGCAGCAAATGAAACCAGCGGTTGGTGGCAGGCCGAGGTCATAGTT
CGCGGTTTCAGAGCTCCTGGCAACCAAAAATCGGGAGATTTGTGGTCTAG
CGCAAGCTTTCTAGACCAT
BO15625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-RA | 888 | CG13599-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-RA | 1029 | CG13599-RA | 75..959 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23932054..23932658 | 297..901 | 3025 | 100 | Plus |
3R | 32079331 | 3R | 23931713..23931994 | 17..298 | 1410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:56:52 has no hits.
BO15625.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:01 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:57 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 71..962 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:04 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 75..959 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:01 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 71..962 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:23 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13599-RA | 75..959 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:23 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23931713..23931994 | 17..298 | 100 | -> | Plus |
3R | 23932056..23932658 | 299..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:04 Download gff for
BO15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19757435..19757716 | 17..298 | 100 | -> | Plus |
arm_3R | 19757778..19758380 | 299..903 | 99 | | Plus |
BO15625.pep Sequence
Translation from 16 to 919
> BO15625.pep
MDQNVKNVDLKLDNIEVLTSGTTAEFVNGILDFLLYQRRQIPFVYKTYKY
YVDKWSDADESGESKDQESFAHYQRNQQRSKAKATKESISDMREIIRQAF
RSSEVKSLRFLFGNNMFMPSEAYTLHIPHDSISRDHYCEHHALPEGRINQ
ALLRLLTCEELYRLFSTELKVTNVFLEMELLTDSDRPQGSHCDSFNLIPK
HILSQLPRSCKNIHLHLLHCSENTPNELRCCKEMDIYHDLGVRNLDKSGE
DVSQTNEEHDVLKAANETSGWWQAEVIVRGFRAPGNQKSGDLWSSASFLD
H
BO15625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13599-PA | 295 | CG13599-PA | 1..295 | 1..295 | 1566 | 100 | Plus |