Clone Sequence Records
BO15626.3prime Sequence
845 bp (775 high quality bases) assembled on 2006-06-02
> BO15626.3prime
ATGGTCTAGAAAGCTTGCTGCCTGCTTCTTTGAGCTCAAGGCTTGGCCTT
CTTTGCTCAGCTTTGTGTACTCCGTCTGCATGATGGACTGGCATTCGTCG
ATCAGCAGCTGCACGTCCTCCCTCTTGTACTTCTCGGTGGACACCTCGGG
TAGGATGTGGATTAGGGCGTGGCCAGGACGGAATGTCTTTTTCTCGTCAT
CCATGAATGAGTACTTCGATATGACCACCGGCTGAACGGGGCTCTTGCCC
TGCAGTGCGATGTGGAATGAGCCCTTCTTGAAGGGCAGCAACGAGTCCTT
GGAGTTGCGCGTTCCCTCAGGGAAGAGCAGTAGCTTGCAGTTGCGCTCCT
GTATCGCCTTCGCCTCCTTTTGCAGAGAGTTGATCGAGTCGGTCTTGCGG
GAGCGGTCGATGTATAGGGTACCCCAGAGCCATGCTCCAATGCCAAAGAA
TGGGATGTAGAGAACCTCCTTCTTGGAGACAACTGTTGCTCTTCCGATCA
CAGGCCACAAATAGGCCAGAACGCAAAGATCAACAGCACTTTGGTGGTTC
ATTATCACCACTGCCCCATGGTCCTTACGGACATTCTCCAGACCACGAAC
CTCCATTGTTATGCCCACCAGGCGGCAAAGCTGCCGGAAGCACCATGATG
GAAAAAGCGCATTTCGATAGTCTCGCGGTCGCAGAATCATAAAGGGCACG
CACAGAAAGACTATCAGACCAGCTCCAAAAAATATAAAGAACATGCGCAT
CTGATAGGGAGCCTTGGCCGTGGCGCTTAGGATTAAAGCCACCACGCAGG
CCAGTCCAATAACTTCGCATGTACAAGCCATGTCGACTGATAACT
BO15626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17608-PA | 816 | fu12-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
| CG17608-PB | 816 | fu12-RB | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu12-RC | 2065 | CG17608-RC | 852..1664 | 831..19 | 4065 | 100 | Minus |
| fu12-RD | 1311 | CG17608-RD | 98..910 | 831..19 | 4065 | 100 | Minus |
| fu12-RB | 1335 | CG17608-RB | 122..934 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8450092..8450728 | 19..655 | 3185 | 100 | Plus |
| 2L | 23513712 | 2L | 8450794..8450969 | 656..831 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:59:18 has no hits.
BO15626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:12 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:39 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17608-PB | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:41:29 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:58 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:58 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8450092..8450728 | 19..655 | 100 | <- | Plus |
| 2L | 8450794..8450969 | 656..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:41:29 Download gff for
BO15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8450092..8450728 | 19..655 | 100 | <- | Plus |
| arm_2L | 8450794..8450969 | 656..831 | 100 | | Plus |
BO15626.5prime Sequence
849 bp (822 high quality bases) assembled on 2006-05-30
> BO15626.5prime
GAAGTTATCAGTCGACATGGCTTGTACATGCGAAGTTATTGGACTGGCCT
GCGTGGTGGCTTTAATCCTAAGCGCCACGGCCAAGGCTCCCTATCAGATG
CGCATGTTCTTTATATTTTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGT
GCCCTTTATGATTCTGCGACCGCGAGACTATCGAAATGCGCTTTTTCCAT
CATGGTGCTTCCGGCAGCTTTGCCGCCTGGTGGGCATAACAATGGAGGTT
CGTGGTCTGGAGAATGTCCGTAAGGACCATGGGGCAGTGGTGATAATGAA
CCACCAAAGTGCTGTTGATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGA
TCGGAAGAGCAACAGTTGTCTCCAAGAAGGAGGTTCTCTACATCCCATTC
TTTGGCATTGGAGCATGGCTCTGGGGTACCCTATACATCGACCGCTCCCG
CAAGACCGACTCGATCAACTCTCTGCAAAAGGAGGCGAAGGCGATACAGG
AGCGCAACTGCAAGCTACTGCTCTTCCCTGAGGGAACGCGCAACTCCAAG
GACTCGTTGCTGCCCTTCAAGAAGGGCTCATTCCACATCGCACTGCAGGG
CAAGAGCCCCGTTCAGCCGGTGGTCATATCGAAGTACTCATTCATGGATG
ACGAGAAAAAGACATTCCGTCCTGGCCACGCCCTAATCCACATCCTACCC
GAGGTGTCCACCGAGAAGTACAAGAGGGAGGACGTGCAGCTGCTGATCGA
CGAATGCCAGTCCATCATGCAGACGGAGTACACAAAGCTGAGCAAAGAAG
GCCAAGCCTTGAGCTCAAAGAAGCAAGCAGCAAGCTTTCTAGACCATTC
BO15626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17608-PA | 816 | fu12-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
| CG17608-PB | 816 | fu12-RB | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu12-RC | 2065 | CG17608-RC | 852..1664 | 17..829 | 4050 | 99.9 | Plus |
| fu12-RD | 1311 | CG17608-RD | 98..910 | 17..829 | 4050 | 99.9 | Plus |
| fu12-RB | 1335 | CG17608-RB | 122..934 | 17..829 | 4050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8450092..8450728 | 829..193 | 3170 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8450794..8450969 | 192..17 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:33:50 has no hits.
BO15626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:13 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:41 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17608-PB | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:33 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:57 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:57 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8450092..8450728 | 193..829 | 99 | <- | Minus |
| 2L | 8450794..8450969 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:33 Download gff for
BO15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8450092..8450728 | 193..829 | 99 | <- | Minus |
| arm_2L | 8450794..8450969 | 17..192 | 100 | | Minus |
BO15626.complete Sequence
847 bp (847 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633521
> BO15626.complete
GAAGTTATCAGTCGACATGGCTTGTACATGCGAAGTTATTGGACTGGCCT
GCGTGGTGGCTTTAATCCTAAGCGCCACGGCCAAGGCTCCCTATCAGATG
CGCATGTTCTTTATATTTTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGT
GCCCTTTATGATTCTGCGACCGCGAGACTATCGAAATGCGCTTTTTCCAT
CATGGTGCTTCCGGCAGCTTTGCCGCCTGGTGGGCATAACAATGGAGGTT
CGTGGTCTGGAGAATGTCCGTAAGGACCATGGGGCAGTGGTGATAATGAA
CCACCAAAGTGCTGTTGATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGA
TCGGAAGAGCAACAGTTGTCTCCAAGAAGGAGGTTCTCTACATCCCATTC
TTTGGCATTGGAGCATGGCTCTGGGGTACCCTATACATCGACCGCTCCCG
CAAGACCGACTCGATCAACTCTCTGCAAAAGGAGGCGAAGGCGATACAGG
AGCGCAACTGCAAGCTACTGCTCTTCCCTGAGGGAACGCGCAACTCCAAG
GACTCGTTGCTGCCCTTCAAGAAGGGCTCATTCCACATCGCACTGCAGGG
CAAGAGCCCCGTTCAGCCGGTGGTCATATCGAAGTACTCATTCATGGATG
ACGAGAAAAAGACATTCCGTCCTGGCCACGCCCTAATCCACATCCTACCC
GAGGTGTCCACCGAGAAGTACAAGAGGGAGGACGTGCAGCTGCTGATCGA
CGAATGCCAGTCCATCATGCAGACGGAGTACACAAAGCTGAGCAAAGAAG
GCCAAGCCTTGAGCTCAAAGAAGCAGGCAGCAAGCTTTCTAGACCAT
BO15626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu12-RC | 816 | CG17608-PC | 1..813 | 17..829 | 4065 | 100 | Plus |
| fu12-RD | 816 | CG17608-PD | 1..813 | 17..829 | 4065 | 100 | Plus |
| fu12-RB | 816 | CG17608-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu12-RC | 2065 | CG17608-RC | 852..1664 | 17..829 | 4065 | 100 | Plus |
| fu12-RD | 1311 | CG17608-RD | 98..910 | 17..829 | 4065 | 100 | Plus |
| fu12-RB | 1335 | CG17608-RB | 122..934 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8450092..8450728 | 829..193 | 3185 | 100 | Minus |
| 2L | 23513712 | 2L | 8450794..8450969 | 192..17 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:52 has no hits.
BO15626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:34 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:22 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:44 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:34 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:04 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu12-RB | 122..934 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:04 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8450794..8450969 | 17..192 | 100 | | Minus |
| 2L | 8450090..8450728 | 193..831 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:44 Download gff for
BO15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8450090..8450728 | 193..831 | 99 | <- | Minus |
| arm_2L | 8450794..8450969 | 17..192 | 100 | | Minus |
BO15626.pep Sequence
Translation from 16 to 847
> BO15626.pep
MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL
RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV
DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI
NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ
PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI
MQTEYTKLSKEGQALSSKKQAASFLDH
BO15626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu12-PC | 271 | CG17608-PC | 1..271 | 1..271 | 1410 | 100 | Plus |
| fu12-PD | 271 | CG17608-PD | 1..271 | 1..271 | 1410 | 100 | Plus |
| fu12-PB | 271 | CG17608-PB | 1..271 | 1..271 | 1410 | 100 | Plus |
| fu12-PA | 271 | CG17608-PA | 1..271 | 1..271 | 1410 | 100 | Plus |
| CG3812-PC | 343 | CG3812-PC | 4..267 | 1..261 | 426 | 36 | Plus |
