Clone Sequence Records
BO15629.3prime Sequence
869 bp (853 high quality bases) assembled on 2006-06-02
> BO15629.3prime
ATGGTCTAGAAAGCTTGCGACGGGCCCAATATCACTTTGGTATCTGGCGG
TCAGGTAGTTGGCCGCCTCTGTCATTTGTTCCAGGCACTGGTACAGACCG
TTAAGATGCCTCCGGCAGCGCTTGGCCAGCTCCGTGGCCTTGTCCCCCGA
GCCCGGCTTCGATTTGGCGACGTCTACAATGTCGCTGCCGTCGCTGCTTT
GGGCGTTGTCGCTCTTGTTGCCATCGGACTCTAGCCCCGAGTCGTTTTCC
TGCGATATGTCCGAGTCAGAGTCACTCATGTTGCTCACCGAGTTGGTGGA
CATCATGGATGCGGTAGAGGTACGGCGCACATGACCCTTGACACTTCCGG
ATGCGGTTGTGCTTGGACTGCCGCTGTTGAATTCAGTCTTGCTCTCGCTG
GGATTGCAGCTCGAAGTGGAACTGGTACTGGCGTTGAGCTGCTGTTCGGA
GTGCTGCTGGTCGTCGTCCTCCTGGTTGGCGGTCCAAAGCAGATCTTTTT
TCAGGGAGTTCAGCATGTTGTACAGATTGAACAGCTCGGAGGCGCTGAGA
AAGTCTTGGACATTTTTTGAATGCGCCGCTCCCCGCTTGCCGTGGGCACT
GGAGGTCTGTGTCAGCTGGTTGGCGGTCGAGTCCTTGCCGGTTGCTGGGA
TGATGTCAGTGCTGTCGCCGATCTGCCGATCCATGAGCCTGCATGGCACC
AGTATGGTGTCGTCCATAATGTTGACAGTCTTTACAAACTTTTCCATCAC
ATTGACAATGCTGTCTTTGGAGAACTGCTGCTCATCGTGACGGGCGATGC
GGCGCAGGCAGTTTCGACTTGTCTCCAGCTTGGTGAGGTCCGTGTATCCA
CTCATGTCGACTGATAACT
BO15629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-PA | 840 | CG2765-RA | 1..837 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 2310 | CG2765-RF | 457..1301 | 863..19 | 4195 | 99.8 | Minus |
| CG2765-RD | 2648 | CG2765-RD | 843..1639 | 815..19 | 3985 | 100 | Minus |
| CG2765-RE | 2072 | CG2765-RE | 267..1063 | 815..19 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24960850..24961506 | 19..675 | 3285 | 100 | Plus |
| 2R | 25286936 | 2R | 24961606..24961748 | 673..815 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 24964572..24964620 | 815..863 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:32:49 has no hits.
BO15629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:14 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-PA | 1..840 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:42 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-PA | 1..840 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:28 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 19..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:38 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 19..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:12:38 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24960850..24961503 | 19..672 | 100 | <- | Plus |
| 2R | 24961606..24961747 | 673..814 | 100 | <- | Plus |
| 2R | 24964572..24964620 | 815..863 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:28 Download gff for
BO15629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20848373..20849026 | 19..672 | 100 | <- | Plus |
| arm_2R | 20849129..20849270 | 673..814 | 100 | <- | Plus |
| arm_2R | 20852095..20852143 | 815..863 | 96 | | Plus |
BO15629.5prime Sequence
873 bp (852 high quality bases) assembled on 2006-05-30
> BO15629.5prime
GAAGTTATCAGTCGACATGAGTGGATACACGGACCTCACCAAGCTGGAGA
CAAGTCGAAACTGCCTGCGCCGCATCGCCCGTCACGATGAGCAGCAGTTC
TCCAAAGACAGCATTGTCAATGTGATGGAAAAGTTTGTAAAGACTGTCAA
CATTATGGACGACACCATACTGGTGCCATGCAGGCTCATGGATCGGCAGA
TCGGCGACAGCACTGACATCATCCCAGCAACCGGCAAGGACTCGACCGCC
AACCAGCTGACACAGACCTCCAGTGCCCACGGCAAGCGGGGAGCGGCGCA
TTCAAAAAATGTCCAAGACTTTCTCAGCGCCTCCGAGCTGTTCAATCTGT
ACAACATGCTGAACTCCCTGAAAAAAGATCTGCTTTGGACCGCCAACCAG
GAGGACGACGACCAGCAGCACTCCGAACAGCAGCTCAACGCCAGTACCAG
TTCCACTTCGAGCTGCAATCCCAGCGAGAGCAAGACTGAATTCAACAGCG
GCAGTCCAAGCACAACCGCATCCGGAAGTGTCAAGGGTCATGTGCGCCGT
ACCTCTACCGCATCCATGATGTCCACCAACTCGGTGAGCAACATGAGTGA
CTCTGACTCGGACATATCGCAGGAAAACGACTCGGGGCTAGAGTCCGATG
GCAACAAGAGCGACAACGCCCAAAGCAGCGACGGCAGCGACATTGTAGAC
GTCGCCAAATCGAAGCCGGGCTCGGGGGACAAGGCCACGGAGCTGGCCAA
GCGCTGCCGGAGGCATCTTAACGGTCTGTACCAGTGCCTGGAACAAATGA
CAGAGGCGGCCAACTACCTGACCGCCAGATACCAAAGTGATATTGGGCCC
GTCGCAAGCTTTCTAGACCATTC
BO15629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-PA | 840 | CG2765-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 2310 | CG2765-RF | 457..1301 | 9..853 | 4195 | 99.8 | Plus |
| CG2765-RD | 2648 | CG2765-RD | 843..1639 | 57..853 | 3985 | 100 | Plus |
| CG2765-RE | 2072 | CG2765-RE | 267..1063 | 57..853 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24960850..24961506 | 853..197 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 24961606..24961748 | 199..57 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 24964572..24964620 | 57..9 | 215 | 95.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:02 has no hits.
BO15629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:15 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:43 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:02 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:07 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:07 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24960850..24961503 | 200..853 | 100 | <- | Minus |
| 2R | 24961606..24961747 | 58..199 | 100 | <- | Minus |
| 2R | 24964572..24964620 | 9..57 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:02 Download gff for
BO15629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20848373..20849026 | 200..853 | 100 | <- | Minus |
| arm_2R | 20849129..20849270 | 58..199 | 100 | <- | Minus |
| arm_2R | 20852095..20852143 | 9..57 | 96 | | Minus |
BO15629.complete Sequence
871 bp (871 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633523
> BO15629.complete
GAAGTTATCAGTCGACATGAGTGGATACACGGACCTCACCAAGCTGGAGA
CAAGTCGAAACTGCCTGCGCCGCATCGCCCGTCACGATGAGCAGCAGTTC
TCCAAAGACAGCATTGTCAATGTGATGGAAAAGTTTGTAAAGACTGTCAA
CATTATGGACGACACCATACTGGTGCCATGCAGGCTCATGGATCGGCAGA
TCGGCGACAGCACTGACATCATCCCAGCAACCGGCAAGGACTCGACCGCC
AACCAGCTGACACAGACCTCCAGTGCCCACGGCAAGCGGGGAGCGGCGCA
TTCAAAAAATGTCCAAGACTTTCTCAGCGCCTCCGAGCTGTTCAATCTGT
ACAACATGCTGAACTCCCTGAAAAAAGATCTGCTTTGGACCGCCAACCAG
GAGGACGACGACCAGCAGCACTCCGAACAGCAGCTCAACGCCAGTACCAG
TTCCACTTCGAGCTGCAATCCCAGCGAGAGCAAGACTGAATTCAACAGCG
GCAGTCCAAGCACAACCGCATCCGGAAGTGTCAAGGGTCATGTGCGCCGT
ACCTCTACCGCATCCATGATGTCCACCAACTCGGTGAGCAACATGAGTGA
CTCTGACTCGGACATATCGCAGGAAAACGACTCGGGGCTAGAGTCCGATG
GCAACAAGAGCGACAACGCCCAAAGCAGCGACGGCAGCGACATTGTAGAC
GTCGCCAAATCGAAGCCGGGCTCGGGGGACAAGGCCACGGAGCTGGCCAA
GCGCTGCCGGAGGCATCTTAACGGTCTGTACCAGTGCCTGGAACAAATGA
CAGAGGCGGCCAACTACCTGACCGCCAGATACCAAAGTGATATTGGGCCC
GTCGCAAGCTTTCTAGACCAT
BO15629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 732 | CG2765-PF | 1..729 | 125..853 | 3645 | 100 | Plus |
| CG2765-RD | 732 | CG2765-PD | 1..729 | 125..853 | 3645 | 100 | Plus |
| CG2765-RE | 732 | CG2765-PE | 1..729 | 125..853 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 2310 | CG2765-RF | 457..1301 | 9..853 | 4195 | 99.8 | Plus |
| CG2765-RD | 2648 | CG2765-RD | 843..1639 | 57..853 | 3985 | 100 | Plus |
| CG2765-RE | 2072 | CG2765-RE | 267..1063 | 57..853 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24960850..24961506 | 853..197 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 24961606..24961748 | 199..57 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 24964572..24964620 | 57..9 | 215 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:42 has no hits.
BO15629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:39 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RA | 464..1308 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:36 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 465..1301 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:23 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RA | 464..1308 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:46 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 465..1301 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:46 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24960848..24961503 | 200..855 | 99 | <- | Minus |
| 2R | 24961606..24961747 | 58..199 | 100 | <- | Minus |
| 2R | 24964572..24964612 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:36 Download gff for
BO15629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20848371..20849026 | 200..855 | 99 | <- | Minus |
| arm_2R | 20849129..20849270 | 58..199 | 100 | <- | Minus |
| arm_2R | 20852095..20852135 | 17..57 | 100 | | Minus |
BO15629.pep Sequence
Translation from 16 to 871
> BO15629.pep
MSGYTDLTKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDT
ILVPCRLMDRQIGDSTDIIPATGKDSTANQLTQTSSAHGKRGAAHSKNVQ
DFLSASELFNLYNMLNSLKKDLLWTANQEDDDQQHSEQQLNASTSSTSSC
NPSESKTEFNSGSPSTTASGSVKGHVRRTSTASMMSTNSVSNMSDSDSDI
SQENDSGLESDGNKSDNAQSSDGSDIVDVAKSKPGSGDKATELAKRCRRH
LNGLYQCLEQMTEAANYLTARYQSDIGPVASFLDH
BO15629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-PF | 243 | CG2765-PF | 1..243 | 37..279 | 1238 | 100 | Plus |
| CG2765-PD | 243 | CG2765-PD | 1..243 | 37..279 | 1238 | 100 | Plus |
| CG2765-PE | 243 | CG2765-PE | 1..243 | 37..279 | 1238 | 100 | Plus |
| CG2765-PC | 243 | CG2765-PC | 1..243 | 37..279 | 1238 | 100 | Plus |
