Clone BO15633 Report

Search the DGRC for BO15633

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG31813-RA
Protein status:BO15633.pep: validated full length
Sequenced Size:550

Clone Sequence Records

BO15633.5prime Sequence

548 bp (548 high quality bases) assembled on 2006-05-30

> BO15633.5prime
GAAGTTATCAGTCGACATGTCAGCCAAATATACACTGATCTTTGCCCTGG
CGGCTCTCTGCTGTCTGGTGTTCTCCACCGAGGCGGCGGCCCAGCGCAGC
CGAGTTCTCAGCTCTCGCCGTGGCTCCGAGCTGGTCGAGAAGACGTCGGA
CAACAAGGAAGACTCCGAGCTGGCCGCCCAGGAGCAAGACCTGGAGCGCC
AGGAGCAGGAGGAGCAGAATGACAGACTGGAGGGACGCAGCGATGATGTT
GCCGAGGGCAGCGACAACAAAGAGGACAAGGAGACCGCCACCAACAACAA
GGACACCATCGTGAAGCCCAACAAGGATGACGCCCGTGCCCGCCGCATCG
TTCGTGCCGGTCGTCGTCGTGGTGGACGCCGCGGTGGTCGCCGTGGAGGT
CGTCGTAGTGCACGCAAATCCGTGCGCCGTGGCGGACGACGAGGTGGACG
CAGGCGCGGTGGACGACGTGGTCGTGGCGGTGCTCGCCGTCGCACCTCCG
TGAAGAGGCGTTCCGGCAAGGGCAACAAGGCCGCAAGCTTTCTAGACC

BO15633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PA 519 CG31813-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..571 13..532 2585 99.8 Plus
CG31813-RA 653 CG31813-RA 52..571 13..532 2585 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736708 13..532 2585 99.8 Plus
Blast to na_te.dros performed 2015-02-09 10:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 170..125 113 71.7 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 477..345 106 55.7 Minus

BO15633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:17 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 17..536 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:46 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 17..536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:19 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..575 9..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:07 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..575 9..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:07 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13736186..13736714 9..537 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:19 Download gff for BO15633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736186..13736714 9..537 98 -> Plus

BO15633.3prime Sequence

548 bp (548 high quality bases) assembled on 2006-06-02

> BO15633.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGTTGCCCTTGCCGGAACGCCTCTTCA
CGGAGGTGCGACGGCGAGCACCGCCACGACCACGTCGTCCACCGCGCCTG
CGTCCACCTCGTCGTCCGCCACGGCGCACGGATTTGCGTGCACTACGACG
ACCTCCACGGCGACCACCGCGGCGTCCACCACGACGACGACCGGCACGAA
CGATGCGGCGGGCACGGGCGTCATCCTTGTTGGGCTTCACGATGGTGTCC
TTGTTGTTGGTGGCGGTCTCCTTGTCCTCTTTGTTGTCGCTGCCCTCGGC
AACATCATCGCTGCGTCCCTCCAGTCTGTCATTCTGCTCCTCCTGCTCCT
GGCGCTCCAGGTCTTGCTCCTGGGCGGCCAGCTCGGAGTCTTCCTTGTTG
TCCGACGTCTTCTCGACCAGCTCGGAGCCACGGCGAGAGCTGAGAACTCG
GCTGCGCTGGGCCGCCGCCTCGGTGGAGAACACCAGACAGCAGAGAGCCG
CCAGGGCAAAGATCAGTGTATATTTGGCTGACATGTCGACTGATAACT

BO15633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PA 519 CG31813-RA 1..516 534..19 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..571 538..19 2585 99.8 Minus
CG31813-RA 653 CG31813-RA 52..571 538..19 2585 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736708 538..19 2585 99.8 Minus
Blast to na_te.dros performed 2015-02-12 18:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 381..426 113 71.7 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 74..206 106 55.7 Plus

BO15633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:16 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 15..534 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:45 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 15..534 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:49:20 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..575 14..542 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:34 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..575 14..542 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:34 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13736186..13736714 14..542 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:49:20 Download gff for BO15633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736186..13736714 14..542 98 -> Minus

BO15633.complete Sequence

550 bp (550 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633524

> BO15633.complete
GAAGTTATCAGTCGACATGTCAGCCAAATATACACTGATCTTTGCCCTGG
CGGCTCTCTGCTGTCTGGTGTTCTCCACCGAGGCGGCGGCCCAGCGCAGC
CGAGTTCTCAGCTCTCGCCGTGGCTCCGAGCTGGTCGAGAAGACGTCGGA
CAACAAGGAAGACTCCGAGCTGGCCGCCCAGGAGCAAGACCTGGAGCGCC
AGGAGCAGGAGGAGCAGAATGACAGACTGGAGGGACGCAGCGATGATGTT
GCCGAGGGCAGCGACAACAAAGAGGACAAGGAGACCGCCACCAACAACAA
GGACACCATCGTGAAGCCCAACAAGGATGACGCCCGTGCCCGCCGCATCG
TTCGTGCCGGTCGTCGTCGTGGTGGACGCCGCGGTGGTCGCCGTGGAGGT
CGTCGTAGTGCACGCAAATCCGTGCGCCGTGGCGGACGACGAGGTGGACG
CAGGCGCGGTGGACGACGTGGTCGTGGCGGTGCTCGCCGTCGCACCTCCG
TGAAGAGGCGTTCCGGCAAGGGCAACAAGGCCGCAAGCTTTCTAGACCAT

BO15633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 519 CG31813-PB 1..516 17..532 2580 100 Plus
CG31813-RA 519 CG31813-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..571 13..532 2585 99.8 Plus
CG31813-RA 653 CG31813-RA 52..571 13..532 2585 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736708 13..532 2585 99.8 Plus
Blast to na_te.dros performed 2014-11-28 01:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 170..125 113 71.7 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 477..345 106 55.7 Minus

BO15633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:03 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 17..536 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:00 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 47..573 9..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:42 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 56..571 17..534 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:03 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 47..573 9..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:07 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 56..571 17..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:07 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736193..13736708 17..534 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:42 Download gff for BO15633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736193..13736708 17..534 99   Plus

BO15633.pep Sequence

Translation from 16 to 550

> BO15633.pep
MSAKYTLIFALAALCCLVFSTEAAAQRSRVLSSRRGSELVEKTSDNKEDS
ELAAQEQDLERQEQEEQNDRLEGRSDDVAEGSDNKEDKETATNNKDTIVK
PNKDDARARRIVRAGRRRGGRRGGRRGGRRSARKSVRRGGRRGGRRRGGR
RGRGGARRRTSVKRRSGKGNKAASFLDH

BO15633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PB 172 CG31813-PB 1..172 1..172 862 100 Plus
CG31813-PA 172 CG31813-PA 1..172 1..172 862 100 Plus