BO15635.complete Sequence
1984 bp assembled on 2006-10-11
GenBank Submission: FJ633525
> BO15635.complete
GAAGTTATCAGTCGACATGCACGCGGAGCTGTATCGCACTCGCAAGCGGT
GGTATGAGTCCGCTTGGCCTGGAGCAGGATTCTGGCGAGGAGCCAACGAC
ACGCTGCCCGTGACGAACTACATCACGTATCCGGCGAATTTCGATCAGCC
GGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATG
TGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGA
GAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCACAGCCCT
GTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGCTCGTCC
AAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCGCCGCTG
AGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCTAATTGA
CAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACACGCTTA
TGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTACTTCAG
AATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGCCTTGCA
CTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGCTTGACC
ATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCCTTGCAG
GCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGAACGACC
AGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTCTGGGAG
CCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCCTATGGC
TATCTGCTGAGAGCCATGCAGCTACGTTACAGCAATCCACGCGGTGTGAT
CCGCAAAAGAGTTCAGCCCACTGTGCCCGCGTATGACAATTGGCTTGAGA
CTGAAAATCTGCCCGAATTGTATGCCATCAAACTTAATCACCACTCCATC
CACATGGAGTCGCTGGCCATAAGGGAACGCATTCTGGGCCGCAATAATCC
GGAGTTGCCTCAGGCAATTATCTATCGAGGAGCTGTGATGGCGGATCAGG
GCAGGTTTTACCAGTGCCAGGTGCTTTGGAACTACGCCATAGATCTGCGA
ATGCGCAATAATGTATCGGTAGATCGCGATCTCTTACGGTTCGCCCAGCT
TTTTGCTCAGATTTTGCGGGTGGAGAACCACAATCTTACGTTGGATCACG
TTCTGCCAGTTTTGGCCAAGTGTCAGCAGGAGATCGAGAACAATAAGTTT
AAAATTAAGGAAGCCAAGCCCAACGCTTGCCCCAGTCTATGGCAGGATCA
GAATAATCAGAACTGCATTACTGCACTCTATCTAATCAAGATCGTTACCC
ATTTGGCGCGACGCAAGAAGGATCAAAACATTGACGAGGAGCACATCCAG
CAGCTATTCCTGGTCGTACGCAAGTTCATACAGAACGACACTCGCCTGCA
GGATGGACAGACATTGCTGCATATCGCCGTCAATGGAGTGATGCCCGTAG
ACGAGTTCTACACAAATGAGATGTGCAGATTTCCCTGCTATGCCACTGCT
TTGGTTCTGGTACACTGTGGCGCCTCCGTGGTTGCAGTGGACTCGGATCG
GAACACCCCTCTACACATCCTAGTGACCAAGGTGAACACCACTCAGGATC
GCCAGGCCGAAATGGCTCGCATTCTGGAGCTGTTCGTCGAGGCAGGAGCC
CATTTGGATGCAGTGAACGCGGCAGGGCAGACAGCGGCCACGGCCTGCAA
GCTGCCTATCTTGGCCAATCGGCTGCACGCCCATCAGAATGCCCACACCA
GCCTCAAGTGCCTGGCCGCACGCTCAATTGCCACCAACAGGCTAAACTTC
AAGGGTCTGATACCCACGCAACTGGAGGCCTTCATACAGATGCACAGCGT
GCGCAAGGTGCTGCCGGCAAGCTTTCTAGACCAT
BO15635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RB | 1953 | CG9025-PB | 1..1950 | 17..1966 | 9750 | 100 | Plus |
| Fem-1-RA | 2109 | CG9025-PA | 277..2106 | 137..1966 | 9150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RB | 2486 | CG9025-RB | 75..2025 | 16..1966 | 9755 | 100 | Plus |
| Fem-1-RA | 2679 | CG9025-RA | 389..2218 | 137..1966 | 9150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20663932..20664678 | 1165..419 | 3735 | 100 | Minus |
| 2R | 25286936 | 2R | 20663453..20663868 | 1578..1163 | 2080 | 100 | Minus |
| 2R | 25286936 | 2R | 20664784..20665069 | 421..136 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 20663160..20663389 | 1805..1576 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 20662935..20663095 | 1966..1806 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 20665364..20665464 | 136..36 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:38:06 has no hits.
BO15635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:44 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 1..1953 | 17..1967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:54 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 66..2024 | 5..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:33 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 76..2025 | 17..1968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:45 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 66..2024 | 5..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:17 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 76..2025 | 17..1968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:17 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20662933..20663095 | 1806..1968 | 98 | <- | Minus |
| 2R | 20663160..20663386 | 1579..1805 | 100 | <- | Minus |
| 2R | 20663453..20663868 | 1163..1578 | 100 | <- | Minus |
| 2R | 20663935..20664677 | 420..1162 | 100 | <- | Minus |
| 2R | 20664786..20665068 | 137..419 | 100 | <- | Minus |
| 2R | 20665364..20665463 | 37..136 | 100 | <- | Minus |
| 2R | 20665545..20665564 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:33 Download gff for
BO15635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16552291..16552573 | 137..419 | 100 | <- | Minus |
| arm_2R | 16552869..16552968 | 37..136 | 100 | <- | Minus |
| arm_2R | 16553050..16553069 | 17..36 | 100 | | Minus |
| arm_2R | 16550438..16550600 | 1806..1968 | 98 | <- | Minus |
| arm_2R | 16550665..16550891 | 1579..1805 | 100 | <- | Minus |
| arm_2R | 16550958..16551373 | 1163..1578 | 100 | <- | Minus |
| arm_2R | 16551440..16552182 | 420..1162 | 100 | <- | Minus |
BO15635.pep Sequence
Translation from 16 to 1984
> BO15635.pep
MHAELYRTRKRWYESAWPGAGFWRGANDTLPVTNYITYPANFDQPDGQSL
TPLTMAAMMGNVKFVKTLLSHYDVDLDRECNVIYDGMVVYGATALWVAAG
MGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLIDNGADV
NATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAES
GHLDVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSL
EEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRYSNPRGVIRKRVQ
PTVPAYDNWLETENLPELYAIKLNHHSIHMESLAIRERILGRNNPELPQA
IIYRGAVMADQGRFYQCQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQIL
RVENHNLTLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQNC
ITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTL
LHIAVNGVMPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLH
ILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPILA
NRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMHSVRKVLP
ASFLDH
BO15635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-PB | 650 | CG9025-PB | 1..650 | 1..650 | 3381 | 100 | Plus |
| Fem-1-PA | 702 | CG9025-PA | 93..702 | 41..650 | 3149 | 100 | Plus |
| CG6966-PC | 664 | CG6966-PC | 43..664 | 51..643 | 701 | 32.1 | Plus |
| CG6966-PB | 664 | CG6966-PB | 43..664 | 51..643 | 701 | 32.1 | Plus |
| m-cup-PA | 702 | CG11896-PA | 105..700 | 52..643 | 383 | 23.9 | Plus |
