Clone Sequence Records
BO15636.3prime Sequence
623 bp (493 high quality bases) assembled on 2006-06-02
> BO15636.3prime
ATGGTCTAAAAAGCTTGCCCACAGGCCCGACTAGTAGCCGCCTGGGGGAA
TGCGGTTCTTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGGCGC
TGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGTT
GCCCTCTGATCTCGAGCCACTGTTCATCTTGAGGTTCTCGGTGGAGGACG
ACACCGAAGACGAGGCCGAGGACACCGATCCGCTCTTGCCGTTGTAGTGG
CCATTGGTGGTCAGCAGCTTCTGGGCGGCAACGGCCTCTGTGTTCTGACC
AAAGGGAATGCTGCTCTTCATGTGGTTCTTGCCGGGGGTGATCGGGCGGG
TGGGCTCCCCAAACAGCCGAGAGTGGGAGTCGACGGTCTTCTGGCCGCGA
CGTGGTGCATCACCGTTGTTTTTCACTCCATTATCTTTCTCGGCAGCGAA
TATGTTGGACGCCATGCGATTCTTCACGTTCCTGGGGGTCTGCGGCGTCT
CCGATCCAAAGATGTCGCTCGATCCGCCGCCCGGGGGCCTCACCACCCTC
TTCTTTGCTTTGCCAACATTGTAAAGCTCATCGTGTTTGAAAGCAGCGTA
GGCGGCCATGTCGACTGATATCT
BO15636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PC | 594 | Jupiter-RC | 1..591 | 609..19 | 2855 | 99.3 | Minus |
CG31363-PD | 576 | Jupiter-RD | 50..573 | 542..19 | 2570 | 99.6 | Minus |
CG31363-PE | 627 | Jupiter-RE | 229..624 | 414..19 | 1955 | 99.7 | Minus |
CG31363-PH | 609 | Jupiter-RH | 211..606 | 414..19 | 1955 | 99.7 | Minus |
CG31363-PA | 594 | Jupiter-RA | 50..436 | 542..156 | 1910 | 99.7 | Minus |
CG31363-PE | 627 | Jupiter-RE | 1..196 | 609..414 | 905 | 98.4 | Minus |
CG31363-PB | 558 | Jupiter-RB | 417..555 | 157..19 | 670 | 99.2 | Minus |
CG31363-PA | 594 | Jupiter-RA | 455..591 | 155..19 | 660 | 99.2 | Minus |
CG31363-PH | 609 | Jupiter-RH | 50..178 | 542..414 | 620 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RC | 1581 | CG31363-RC | 206..796 | 609..19 | 2895 | 99.3 | Minus |
Jupiter-RD | 1517 | CG31363-RD | 204..732 | 547..19 | 2600 | 99.4 | Minus |
Jupiter-RA | 1535 | CG31363-RA | 204..750 | 547..19 | 2410 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 156..414 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 11591171..11591310 | 19..158 | 685 | 99.3 | Plus |
3R | 32079331 | 3R | 11593631..11593768 | 412..549 | 660 | 98.6 | Plus |
3R | 32079331 | 3R | 11604141..11604203 | 547..609 | 300 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:38:39 has no hits.
BO15636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:18 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PC | 1..594 | 15..609 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:48 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PC | 1..594 | 15..609 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:45 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 201..799 | 15..617 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:47 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 201..799 | 15..617 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:47 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591172..11591307 | 20..155 | 99 | <- | Plus |
3R | 11592367..11592624 | 156..413 | 100 | <- | Plus |
3R | 11593633..11593766 | 414..547 | 98 | <- | Plus |
3R | 11604142..11604208 | 548..617 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:45 Download gff for
BO15636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416894..7417029 | 20..155 | 99 | <- | Plus |
arm_3R | 7418089..7418346 | 156..413 | 100 | <- | Plus |
arm_3R | 7419355..7419488 | 414..547 | 98 | <- | Plus |
arm_3R | 7429864..7429930 | 548..617 | 92 | | Plus |
BO15636.5prime Sequence
623 bp (623 high quality bases) assembled on 2006-05-30
> BO15636.5prime
GAAGTTATCAGTCGACATGGCCGCCTACGCTGCTTTCAAACACGTTGAGC
TTTACAATGTTGGCAAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGC
GGATCGAGCGACATCTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGT
GAAGAATCGCATGGCGTCCAACATATTCGCTGCCGAGAAAGATAATGGAG
TGAAAAACAACGGTGATGCACCACGTCGCGGCCAGAAGACCGTCGACTCC
CACTCTCGGCTGTTTGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAA
CCACATGAAGAGCAGCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCG
CCCAGAAGCTGCTGACCACCAATGGCCACTACAACGGCAAGAGCGGATCG
GTGTCCTCGGCCTCGTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGAT
GAACAGTGGCTCGAGATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGGCAAGCTTTCTAGACC
BO15636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PC | 594 | Jupiter-RC | 1..591 | 17..607 | 2955 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 45..573 | 79..607 | 2645 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 229..624 | 212..607 | 1980 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 211..606 | 212..607 | 1980 | 100 | Plus |
CG31363-PA | 594 | Jupiter-RA | 45..436 | 79..470 | 1960 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 1..196 | 17..212 | 980 | 100 | Plus |
CG31363-PB | 558 | Jupiter-RB | 417..555 | 469..607 | 695 | 100 | Plus |
CG31363-PA | 594 | Jupiter-RA | 455..591 | 471..607 | 685 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 45..178 | 79..212 | 670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RC | 1581 | CG31363-RC | 206..796 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 204..732 | 79..607 | 2645 | 100 | Plus |
Jupiter-RA | 1535 | CG31363-RA | 204..750 | 79..607 | 2455 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 470..212 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591171..11591310 | 607..468 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593768 | 214..77 | 690 | 100 | Minus |
3R | 32079331 | 3R | 11604141..11604203 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:59:15 has no hits.
BO15636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:19 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PC | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:49 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PC | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:43:36 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 201..799 | 9..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:47 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 201..799 | 9..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:47 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11604142..11604208 | 9..78 | 94 | | Minus |
3R | 11591168..11591307 | 471..611 | 98 | <- | Minus |
3R | 11592367..11592624 | 213..470 | 100 | <- | Minus |
3R | 11593633..11593766 | 79..212 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:43:36 Download gff for
BO15636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 471..611 | 98 | <- | Minus |
arm_3R | 7418089..7418346 | 213..470 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 79..212 | 100 | <- | Minus |
arm_3R | 7429864..7429930 | 9..78 | 94 | | Minus |
BO15636.complete Sequence
625 bp (625 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633526
> BO15636.complete
GAAGTTATCAGTCGACATGGCCGCCTACGCTGCTTTCAAACACGTTGAGC
TTTACAATGTTGGCAAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGC
GGATCGAGCGACATCTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGT
GAAGAATCGCATGGCGTCCAACATATTCGCTGCCGAGAAAGATAATGGAG
TGAAAAACAACGGTGATGCACCACGTCGCGGCCAGAAGACCGTCGACTCC
CACTCTCGGCTGTTTGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAA
CCACATGAAGAGCAGCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCG
CCCAGAAGCTGCTGACCACCAATGGCCACTACAACGGCAAGAGCGGATCG
GTGTCCTCGGCCTCGTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGAT
GAACAGTGGCTCGAGATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGGCAAGCTTTCTAGACCAT
BO15636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RC | 594 | CG31363-PC | 1..591 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 576 | CG31363-PD | 45..573 | 79..607 | 2645 | 100 | Plus |
Jupiter-RA | 594 | CG31363-PA | 45..591 | 79..607 | 2430 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RC | 1581 | CG31363-RC | 206..796 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 204..732 | 79..607 | 2645 | 100 | Plus |
Jupiter-RA | 1535 | CG31363-RA | 204..750 | 79..607 | 2430 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 470..212 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591171..11591310 | 607..468 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593768 | 214..77 | 690 | 100 | Minus |
3R | 32079331 | 3R | 11604141..11604203 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:01 has no hits.
BO15636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:04 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:59 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 203..793 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:49 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 206..796 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:05 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 198..796 | 9..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:44 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RC | 206..796 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:44 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591169..11591307 | 471..609 | 98 | <- | Minus |
3R | 11592367..11592624 | 213..470 | 100 | <- | Minus |
3R | 11593633..11593766 | 79..212 | 100 | <- | Minus |
3R | 11604142..11604203 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:49 Download gff for
BO15636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416891..7417029 | 471..609 | 98 | <- | Minus |
arm_3R | 7418089..7418346 | 213..470 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 79..212 | 100 | <- | Minus |
arm_3R | 7429864..7429925 | 17..78 | 100 | | Minus |
BO15636.pep Sequence
Translation from 16 to 625
> BO15636.pep
MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA
SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS
IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR
SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLWASF
LDH
BO15636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-PC | 197 | CG31363-PC | 1..197 | 1..197 | 1025 | 100 | Plus |
Jupiter-PE | 208 | CG31363-PE | 1..208 | 1..197 | 1003 | 94.7 | Plus |
Jupiter-PD | 191 | CG31363-PD | 11..191 | 17..197 | 925 | 97.8 | Plus |
Jupiter-PA | 197 | CG31363-PA | 11..197 | 17..197 | 904 | 94.1 | Plus |
Jupiter-PH | 202 | CG31363-PH | 11..202 | 17..197 | 903 | 92.2 | Plus |