Clone Sequence Records
BO15640.3prime Sequence
350 bp (350 high quality bases) assembled on 2006-06-02
> BO15640.3prime
ATGGTCTAGAAAGCTTGCGTAAATATTGAGCCTTTCCATATCCCGGATTT
CCATGATATCCGTCTTCAGTCGCTGCTTAACGATCTCCCGCCAAATGGCT
TCCCGATCCCGGTTGTCCGTCACGCCCATTCTTTGCAGTGAGGAGTCTGT
GATCCGGAGTAGAGCCCTTCCGGTTATATCGTGCTGGGCGAAGAGCTGCT
CATACTGGGTGTATTCACCGCAGTGGCGGCGATACCACTTGAGCACATCG
CTAACTGTCCACAGGTACACTGCCTTCGGTCGCGTAGTTTTCGTTCTGGT
TTTGTTTTGCGTTGAGTTAATAGTTTCTTCACCCATGTCGACTGATAACT
BO15640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30476-PA | 321 | CG30476-RA | 1..318 | 336..19 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..387 | 336..19 | 1590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753110 | 186..19 | 840 | 100 | Minus |
2R | 25286936 | 2R | 14752590..14752742 | 336..184 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:51 has no hits.
BO15640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:20 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 18..336 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:50 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 18..336 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:02 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..387 | 19..349 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:51:44 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..387 | 19..349 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:51:44 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752578..14752742 | 184..349 | 96 | -> | Minus |
2R | 14752946..14753110 | 19..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:02 Download gff for
BO15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640083..10640247 | 184..349 | 96 | -> | Minus |
arm_2R | 10640451..10640615 | 19..183 | 100 | | Minus |
BO15640.5prime Sequence
350 bp (350 high quality bases) assembled on 2006-05-30
> BO15640.5prime
GAAGTTATCAGTCGACATGGGTGAAGAAACTATTAACTCAACGCAAAACA
AAACCAGAACGAAAACTACGCGACCGAAGGCAGTGTACCTGTGGACAGTT
AGCGATGTGCTCAAGTGGTATCGCCGCCACTGCGGTGAATACACCCAGTA
TGAGCAGCTCTTCGCCCAGCACGATATAACCGGAAGGGCTCTACTCCGGA
TCACAGACTCCTCACTGCAAAGAATGGGCGTGACGGACAACCGGGATCGG
GAAGCCATTTGGCGGGAGATCGTTAAGCAGCGACTGAAGACGGATATCAT
GGAAATCCGGGATATGGAAAGGCTCAATATTTACGCAAGCTTTCTAGACC
BO15640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30476-PA | 321 | CG30476-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..387 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753110 | 167..334 | 840 | 100 | Plus |
2R | 25286936 | 2R | 14752590..14752742 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:50:51 has no hits.
BO15640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:21 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:52 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:17 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..387 | 4..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:06 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..387 | 4..334 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:06 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752578..14752742 | 4..169 | 96 | -> | Plus |
2R | 14752946..14753110 | 170..334 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:17 Download gff for
BO15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640083..10640247 | 4..169 | 96 | -> | Plus |
arm_2R | 10640451..10640615 | 170..334 | 100 | | Plus |
BO15640.complete Sequence
352 bp (352 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633527
> BO15640.complete
GAAGTTATCAGTCGACATGGGTGAAGAAACTATTAACTCAACGCAAAACA
AAACCAGAACGAAAACTACGCGACCGAAGGCAGTGTACCTGTGGACAGTT
AGCGATGTGCTCAAGTGGTATCGCCGCCACTGCGGTGAATACACCCAGTA
TGAGCAGCTCTTCGCCCAGCACGATATAACCGGAAGGGCTCTACTCCGGA
TCACAGACTCCTCACTGCAAAGAATGGGCGTGACGGACAACCGGGATCGG
GAAGCCATTTGGCGGGAGATCGTTAAGCAGCGACTGAAGACGGATATCAT
GGAAATCCGGGATATGGAAAGGCTCAATATTTACGCAAGCTTTCTAGACC
AT
BO15640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 321 | CG30476-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..387 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753110 | 167..334 | 840 | 100 | Plus |
2R | 25286936 | 2R | 14752590..14752742 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:00 has no hits.
BO15640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:05 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:04 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 53..382 | 4..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:51 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 70..387 | 17..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:06 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 53..382 | 4..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:47 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 70..387 | 17..336 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:47 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752590..14752742 | 17..169 | 100 | -> | Plus |
2R | 14752946..14753110 | 170..336 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:51 Download gff for
BO15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640095..10640247 | 17..169 | 100 | -> | Plus |
arm_2R | 10640451..10640615 | 170..336 | 98 | | Plus |
BO15640.pep Sequence
Translation from 16 to 352
> BO15640.pep
MGEETINSTQNKTRTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFA
QHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTDIMEIRDM
ERLNIYASFLDH
BO15640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-PA | 106 | CG30476-PA | 1..106 | 1..106 | 557 | 100 | Plus |