Clone Sequence Records
BO15641.3prime Sequence
578 bp (578 high quality bases) assembled on 2006-06-02
> BO15641.3prime
ATGGTCTAGAAAGCTTGCAAGGGTGTGGTAGTTGCGCTCGTTGCGGGCCT
TGTAGAACTTGTAGGCCACTAAGCCGATAGCGAGCAGGCCCAGAGTCAGC
ACAATGCCGCCAATGAACGAGGATCCATCGAAATGACCGCACGGCACGGG
CTTCGGCGCCGGAGTGGTTGATGTGTGTGGCGGCGGCGTAGTTGTGGTCG
AGTTCGGAGACGGAGTGGTCGTAGATGTAGTTCCAGGCGTGGTGGTGGTC
GTTGCCGGAGTGGTGCTGCTGGTGGTGCTGGCCGGAGTGGTGCTGCTGGT
GGTGCTGGCTGGAGTAGTGGAAGTTGTGGTCTTCTCAGTCGATGTGGTAA
TTGGTGGCGTCGTCGTGGTCTTTTCAGTTGTGGTGCTCGTGGTTGAGGTC
GACGGTGGCGTCACAGTAGTGGTGGTGTCCGGCGGAGTGGTGGTGTTCTT
GGATTCCTGGGTGGTGGTGTCCGCTGGAGCCGGTGTGGTCACTTCTTCGC
ACAAATTCGCGGAGAAGAGGCCCACAAAGAGGCACAAGATTAGGAATTTC
GCCTGCCGATTCATGTCGACTGATAACT
BO15641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16707-PA | 549 | vsg-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
CG16707-PB | 549 | vsg-RB | 1..546 | 564..19 | 2730 | 100 | Minus |
CG16707-PD | 552 | vsg-RD | 75..549 | 493..19 | 2375 | 100 | Minus |
CG16707-PC | 552 | vsg-RC | 75..549 | 493..19 | 2375 | 100 | Minus |
CG16707-PD | 552 | vsg-RD | 1..73 | 564..492 | 365 | 100 | Minus |
CG16707-PC | 552 | vsg-RC | 1..73 | 564..492 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..667 | 564..19 | 2730 | 100 | Minus |
vsg-RB | 2164 | CG16707-RB | 122..667 | 564..19 | 2730 | 100 | Minus |
vsg-RA | 2270 | CG16707-RA | 228..773 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716219 | 493..19 | 2375 | 100 | Minus |
3L | 28110227 | 3L | 9714551..9714623 | 564..492 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:22:42 has no hits.
BO15641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:22 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-PA | 1..549 | 16..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:53 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16707-PB | 1..549 | 16..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:39 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 13..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 13..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:18 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 492..564 | 100 | -> | Minus |
3L | 9715747..9716224 | 13..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:39 Download gff for
BO15641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 492..564 | 100 | -> | Minus |
arm_3L | 9708847..9709324 | 13..491 | 99 | | Minus |
BO15641.5prime Sequence
578 bp (578 high quality bases) assembled on 2006-05-30
> BO15641.5prime
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTGCAAGCTTTCTAGACC
BO15641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16707-PA | 549 | vsg-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG16707-PB | 549 | vsg-RB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG16707-PD | 552 | vsg-RD | 75..549 | 88..562 | 2375 | 100 | Plus |
CG16707-PC | 552 | vsg-RC | 75..549 | 88..562 | 2375 | 100 | Plus |
CG16707-PD | 552 | vsg-RD | 1..73 | 17..89 | 365 | 100 | Plus |
CG16707-PC | 552 | vsg-RC | 1..73 | 17..89 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..667 | 17..562 | 2730 | 100 | Plus |
vsg-RB | 2164 | CG16707-RB | 122..667 | 17..562 | 2730 | 100 | Plus |
vsg-RA | 2270 | CG16707-RA | 228..773 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716219 | 88..562 | 2375 | 100 | Plus |
3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:44:52 has no hits.
BO15641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:23 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-PA | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:55 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16707-PB | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:00 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:06 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 17..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:06 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
3L | 9715747..9716224 | 90..568 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:00 Download gff for
BO15641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
arm_3L | 9708847..9709324 | 90..568 | 99 | | Plus |
BO15641.complete Sequence
580 bp (580 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633528
> BO15641.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTGCAAGCTTTCTAGACCAT
BO15641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 789 | CG16707-PE | 1..546 | 17..562 | 2730 | 100 | Plus |
vsg-RB | 549 | CG16707-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
vsg-RA | 549 | CG16707-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..667 | 17..562 | 2730 | 100 | Plus |
vsg-RB | 2164 | CG16707-RB | 122..667 | 17..562 | 2730 | 100 | Plus |
vsg-RA | 2270 | CG16707-RA | 228..773 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716219 | 88..562 | 2375 | 100 | Plus |
3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:16:27 has no hits.
BO15641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:07 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RB | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:06 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 232..782 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:27 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..773 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:07 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RB | 111..661 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:54 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..773 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:54 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
3L | 9715747..9716219 | 90..564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:27 Download gff for
BO15641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
arm_3L | 9708847..9709319 | 90..564 | 99 | | Plus |
BO15641.pep Sequence
Translation from 16 to 580
> BO15641.pep
MNRQAKFLILCLFVGLFSANLCEEVTTPAPADTTTQESKNTTTPPDTTTT
VTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTSS
TTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSSF
IGGIVLTLGLLAIGLVAYKFYKARNERNYHTLASFLDH
BO15641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-PB | 182 | CG16707-PB | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PA | 182 | CG16707-PA | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PE | 262 | CG16707-PE | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PC | 183 | CG16707-PC | 1..183 | 1..182 | 938 | 99.5 | Plus |
vsg-PD | 183 | CG16707-PD | 1..183 | 1..182 | 938 | 99.5 | Plus |