Clone BO15641 Report

Search the DGRC for BO15641

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptvsg-RA
Protein status:BO15641.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO15641.3prime Sequence

578 bp (578 high quality bases) assembled on 2006-06-02

> BO15641.3prime
ATGGTCTAGAAAGCTTGCAAGGGTGTGGTAGTTGCGCTCGTTGCGGGCCT
TGTAGAACTTGTAGGCCACTAAGCCGATAGCGAGCAGGCCCAGAGTCAGC
ACAATGCCGCCAATGAACGAGGATCCATCGAAATGACCGCACGGCACGGG
CTTCGGCGCCGGAGTGGTTGATGTGTGTGGCGGCGGCGTAGTTGTGGTCG
AGTTCGGAGACGGAGTGGTCGTAGATGTAGTTCCAGGCGTGGTGGTGGTC
GTTGCCGGAGTGGTGCTGCTGGTGGTGCTGGCCGGAGTGGTGCTGCTGGT
GGTGCTGGCTGGAGTAGTGGAAGTTGTGGTCTTCTCAGTCGATGTGGTAA
TTGGTGGCGTCGTCGTGGTCTTTTCAGTTGTGGTGCTCGTGGTTGAGGTC
GACGGTGGCGTCACAGTAGTGGTGGTGTCCGGCGGAGTGGTGGTGTTCTT
GGATTCCTGGGTGGTGGTGTCCGCTGGAGCCGGTGTGGTCACTTCTTCGC
ACAAATTCGCGGAGAAGAGGCCCACAAAGAGGCACAAGATTAGGAATTTC
GCCTGCCGATTCATGTCGACTGATAACT

BO15641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16707-PA 549 vsg-RA 1..546 564..19 2730 100 Minus
CG16707-PB 549 vsg-RB 1..546 564..19 2730 100 Minus
CG16707-PD 552 vsg-RD 75..549 493..19 2375 100 Minus
CG16707-PC 552 vsg-RC 75..549 493..19 2375 100 Minus
CG16707-PD 552 vsg-RD 1..73 564..492 365 100 Minus
CG16707-PC 552 vsg-RC 1..73 564..492 365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..667 564..19 2730 100 Minus
vsg-RB 2164 CG16707-RB 122..667 564..19 2730 100 Minus
vsg-RA 2270 CG16707-RA 228..773 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716219 493..19 2375 100 Minus
3L 28110227 3L 9714551..9714623 564..492 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:22:42 has no hits.

BO15641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:22 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
vsg-PA 1..549 16..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:53 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16707-PB 1..549 16..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:39 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 13..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 13..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:18 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 492..564 100 -> Minus
3L 9715747..9716224 13..491 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:39 Download gff for BO15641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 492..564 100 -> Minus
arm_3L 9708847..9709324 13..491 99   Minus

BO15641.5prime Sequence

578 bp (578 high quality bases) assembled on 2006-05-30

> BO15641.5prime
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTGCAAGCTTTCTAGACC

BO15641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG16707-PA 549 vsg-RA 1..546 17..562 2730 100 Plus
CG16707-PB 549 vsg-RB 1..546 17..562 2730 100 Plus
CG16707-PD 552 vsg-RD 75..549 88..562 2375 100 Plus
CG16707-PC 552 vsg-RC 75..549 88..562 2375 100 Plus
CG16707-PD 552 vsg-RD 1..73 17..89 365 100 Plus
CG16707-PC 552 vsg-RC 1..73 17..89 365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..667 17..562 2730 100 Plus
vsg-RB 2164 CG16707-RB 122..667 17..562 2730 100 Plus
vsg-RA 2270 CG16707-RA 228..773 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716219 88..562 2375 100 Plus
3L 28110227 3L 9714551..9714623 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:44:52 has no hits.

BO15641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:23 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
vsg-PA 1..549 17..565 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:55 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16707-PB 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:00 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:06 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:06 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 17..89 100 -> Plus
3L 9715747..9716224 90..568 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:00 Download gff for BO15641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 17..89 100 -> Plus
arm_3L 9708847..9709324 90..568 99   Plus

BO15641.complete Sequence

580 bp (580 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633528

> BO15641.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTGCAAGCTTTCTAGACCAT

BO15641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 789 CG16707-PE 1..546 17..562 2730 100 Plus
vsg-RB 549 CG16707-PB 1..546 17..562 2730 100 Plus
vsg-RA 549 CG16707-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..667 17..562 2730 100 Plus
vsg-RB 2164 CG16707-RB 122..667 17..562 2730 100 Plus
vsg-RA 2270 CG16707-RA 228..773 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716219 88..562 2375 100 Plus
3L 28110227 3L 9714551..9714623 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:16:27 has no hits.

BO15641.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:07 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RB 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:06 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 232..782 17..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:27 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..773 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:07 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RB 111..661 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:54 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..773 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:54 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 17..89 100 -> Plus
3L 9715747..9716219 90..564 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:27 Download gff for BO15641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 17..89 100 -> Plus
arm_3L 9708847..9709319 90..564 99   Plus

BO15641.pep Sequence

Translation from 16 to 580

> BO15641.pep
MNRQAKFLILCLFVGLFSANLCEEVTTPAPADTTTQESKNTTTPPDTTTT
VTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTSS
TTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSSF
IGGIVLTLGLLAIGLVAYKFYKARNERNYHTLASFLDH

BO15641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-PB 182 CG16707-PB 1..182 1..182 950 100 Plus
vsg-PA 182 CG16707-PA 1..182 1..182 950 100 Plus
vsg-PE 262 CG16707-PE 1..182 1..182 950 100 Plus
vsg-PC 183 CG16707-PC 1..183 1..182 938 99.5 Plus
vsg-PD 183 CG16707-PD 1..183 1..182 938 99.5 Plus