Clone Sequence Records
BO15642.5prime Sequence
455 bp (455 high quality bases) assembled on 2006-05-30
> BO15642.5prime
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAAGCAAGCTTTCT
AGACC
BO15642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PA | 426 | CG31460-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..633 | 17..439 | 2115 | 100 | Plus |
CG31460-RA | 554 | CG31460-RA | 48..470 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563361 | 21..439 | 2095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:50:39 has no hits.
BO15642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:25 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:57 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:15 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 10..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:04 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 10..449 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:04 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562940..8563371 | 16..449 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:15 Download gff for
BO15642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388662..4389093 | 16..449 | 98 | | Plus |
BO15642.3prime Sequence
455 bp (455 high quality bases) assembled on 2006-06-02
> BO15642.3prime
ATGGTCTAGAAAGCTTGCTTTGAACTTCTTTCCGCCCTTTCTCGTCGTAG
GAGCATCCACGCTGGGCACCTGAACGGAGTAATACTTCGTGGAGATCCTG
TTAAGGAAGTAGAGCCCCACCAGGGAAAAGAGAACACTGGTGGTGGCGCA
GACACGATGCACGAGTCCCGCGGCGGCCACCGTGAGTGAGAGACAGAAAA
TAATCTCTGGTAGCAGCTTGGCCTGGAAGTCCTGGCCGAAAACAACCATC
TCCGCGTTGGAGACGCACGTGAGGCTCAGGATGAACACCCAGGAGAAGAG
GTATCCGCCCAAAAGGACCCTCAGCTGCGAGTCGTTAAACCATTCTGAGC
AGAAACGCAGTGTGCCGAACAAAACAATGCTCAGGAGGCCCGAGATGATG
GAGGATACCACGGTGCTCTTACTGCTCACTGAAGCGGACATGTCGACTGA
TAACT
BO15642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PA | 426 | CG31460-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..633 | 441..19 | 2115 | 100 | Minus |
CG31460-RA | 554 | CG31460-RA | 48..470 | 441..19 | 2115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563361 | 437..19 | 2095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:22:33 has no hits.
BO15642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:24 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 16..441 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:56 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 16..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:38 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 9..448 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:58 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 9..448 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:58 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562940..8563371 | 9..442 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:38 Download gff for
BO15642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388662..4389093 | 9..442 | 98 | | Minus |
BO15642.complete Sequence
457 bp (457 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633529
> BO15642.complete
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAAGCAAGCTTTCT
AGACCAT
BO15642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 426 | CG31460-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
CG31460-RA | 426 | CG31460-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..633 | 17..439 | 2115 | 100 | Plus |
CG31460-RA | 554 | CG31460-RA | 48..470 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563361 | 21..439 | 2095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:14:52 has no hits.
BO15642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:08 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:08 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 26..464 | 10..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:45 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 48..470 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:08 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 26..464 | 10..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:47 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 48..470 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:47 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562941..8563361 | 17..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:45 Download gff for
BO15642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388663..4389083 | 17..441 | 99 | | Plus |
BO15642.pep Sequence
Translation from 16 to 457
> BO15642.pep
MSASVSSKSTVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFS
WVFILSLTCVSNAEMVVFGQDFQAKLLPEIIFCLSLTVAAAGLVHRVCAT
TSVLFSLVGLYFLNRISTKYYSVQVPSVDAPTTRKGGKKFKASFLDH
BO15642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PB | 141 | CG31460-PB | 1..141 | 1..141 | 705 | 100 | Plus |
CG31460-PA | 141 | CG31460-PA | 1..141 | 1..141 | 705 | 100 | Plus |