Clone BO15642 Report

Search the DGRC for BO15642

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG31460-RA
Protein status:BO15642.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO15642.5prime Sequence

455 bp (455 high quality bases) assembled on 2006-05-30

> BO15642.5prime
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAAGCAAGCTTTCT
AGACC

BO15642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PA 426 CG31460-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..633 17..439 2115 100 Plus
CG31460-RA 554 CG31460-RA 48..470 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563361 21..439 2095 100 Plus
Blast to na_te.dros performed on 2015-02-09 10:50:39 has no hits.

BO15642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:25 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:57 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:15 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 10..449 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:04 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 10..449 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:04 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8562940..8563371 16..449 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:15 Download gff for BO15642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388662..4389093 16..449 98   Plus

BO15642.3prime Sequence

455 bp (455 high quality bases) assembled on 2006-06-02

> BO15642.3prime
ATGGTCTAGAAAGCTTGCTTTGAACTTCTTTCCGCCCTTTCTCGTCGTAG
GAGCATCCACGCTGGGCACCTGAACGGAGTAATACTTCGTGGAGATCCTG
TTAAGGAAGTAGAGCCCCACCAGGGAAAAGAGAACACTGGTGGTGGCGCA
GACACGATGCACGAGTCCCGCGGCGGCCACCGTGAGTGAGAGACAGAAAA
TAATCTCTGGTAGCAGCTTGGCCTGGAAGTCCTGGCCGAAAACAACCATC
TCCGCGTTGGAGACGCACGTGAGGCTCAGGATGAACACCCAGGAGAAGAG
GTATCCGCCCAAAAGGACCCTCAGCTGCGAGTCGTTAAACCATTCTGAGC
AGAAACGCAGTGTGCCGAACAAAACAATGCTCAGGAGGCCCGAGATGATG
GAGGATACCACGGTGCTCTTACTGCTCACTGAAGCGGACATGTCGACTGA
TAACT

BO15642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PA 426 CG31460-RA 1..423 441..19 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..633 441..19 2115 100 Minus
CG31460-RA 554 CG31460-RA 48..470 441..19 2115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563361 437..19 2095 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:22:33 has no hits.

BO15642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:24 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 16..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:56:56 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 16..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:38 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 9..448 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:58 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 9..448 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:58 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8562940..8563371 9..442 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:38 Download gff for BO15642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388662..4389093 9..442 98   Minus

BO15642.complete Sequence

457 bp (457 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633529

> BO15642.complete
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAAGCAAGCTTTCT
AGACCAT

BO15642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 426 CG31460-PB 1..423 17..439 2115 100 Plus
CG31460-RA 426 CG31460-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..633 17..439 2115 100 Plus
CG31460-RA 554 CG31460-RA 48..470 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563361 21..439 2095 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:14:52 has no hits.

BO15642.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:08 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:08 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 26..464 10..449 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:45 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 48..470 17..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:08 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 26..464 10..449 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:47 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 48..470 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:47 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8562941..8563361 17..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:45 Download gff for BO15642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388663..4389083 17..441 99   Plus

BO15642.pep Sequence

Translation from 16 to 457

> BO15642.pep
MSASVSSKSTVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFS
WVFILSLTCVSNAEMVVFGQDFQAKLLPEIIFCLSLTVAAAGLVHRVCAT
TSVLFSLVGLYFLNRISTKYYSVQVPSVDAPTTRKGGKKFKASFLDH

BO15642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PB 141 CG31460-PB 1..141 1..141 705 100 Plus
CG31460-PA 141 CG31460-PA 1..141 1..141 705 100 Plus