BO15647.complete Sequence
1738 bp assembled on 2006-10-11
GenBank Submission: FJ633531
> BO15647.complete
GAAGTTATCAGTCGACATGGCAGCCAGCGAAGCGCCACCCGCAGACCCGG
CGGTGGAGGTGGCGCCACCAGCGAAGGACTCGGAAGACGTCACTCTGGAC
GCCATCCTGAAGCACCTGGGGCAGTTCGGACGCTTCCAGCTGATCATATT
CCTCCTAATCTGCCTGCCGATGATGTTCCACGCCATGTTCTCGGTCACAT
ACGTGTTTACCGCTGCCACAGTGACGCACAGATGTAGCGTGGAAGAGTGC
GATTTGCCTGGAAGCAACTACTACGAGCCACACACCAATTGGAGTATCCC
CAAGAACGGCAAGGATCTGGACTCCTGTAATCGGTACACCAACTCGGAGC
TGCCCCAGTGGAACCATTCTGTGGACATTTGCTCGGCCGACCACTTCACA
AAAAACAAGGAGGCCTGCGCCCACAACGAGTTCGTTTTTCGCGACGATGA
AGTTACCATTTCCAATGACTTTGGCATTTTCTGCGATGATGAATGGAAGC
TATCTATGGTGGGAACCATAAACAACTTGGGACAATTCTTCGGCATTCCC
ATCGGGGGCTTTGTGGCGGATCGATATGGACGGAGTTTCTCAATCGCTCT
CGGCGGAATATTGGGAGCCGTGCTTGGCGTAATTCGCTCCTTCTCGCCCA
GCTACGGTTGGTTCCTTGTGTTCGAGTTCCTGGACAACATGACCAGCAGT
ACGTTGTACTCCACCTGTTTCGTGATCGGGATCGAGCTAGTGGGACCCAA
GCGACGCGTGCTGGCGTGCAGTGTGATTACGGTCTTTTACGCGGTGGGTG
AGGTGCTGCTCGCGATGTCCGCCAAGGCGTTCCACGATTGGCGGATCCTA
CTGCGCATCACGTACGGGCCCTCGCTGATCTTGCTGGCCTACTTTTGGAT
CCTGCCGGAGAGTGTGCGCTGGCTGCTTAGTCAGGGCAAGGAGGAGCGGG
CCAAGAATATCCTTCGGCGAGCCGCCCATGTGAACAAGCGCGAGCTGCCG
GAGAGCGTGCTGGACAAGCTTGTGCTGGCCAATCGGGACAAGTTGCAGCA
GTCGTCGGAAAGCCGTTTCCCCATACGAGAGGCTTTCAAGAACTTCAAGT
GGCGCATTGCTAACTGCTCCCTCTGCTGGATTGTCCACGTGCTGGTCTAC
TACGGATTGAGCCTTAATGTTGTGCTGTTGGATGGAGACAAGTACAATAA
CTTCGCTTACATCGCCCTGGTTGAGATTCCAGGCTTCTTCATGCCCCTGC
TCATCATGGACCGTTTCGGCCGGCGGTACTCCCTCTGCGGGCTGATGCTA
GCCAGCGGTCTTTGCTGCATCGGAACGATATTCACCGGCGCGGATCAGCC
AGTGCTTCAATTGGTGCTATTTCTTGTTGGCAAACTGACCATCACTGCCA
GCTTCCAGGTGCTCTATTTCTTCGCCTCAGAGATCTATCCCACGAATCTG
AGAAACAGTCTGCTTAGCTTCTGCTCCATGATGGGCAGGTTTGGTTCCAT
GCTGGCCCCGCAGACGCCTCTTCTGGCCAAGTATTATGCCAATGCTCCTG
CCATGCTCTTCGCCGGCGCCGCCATCGTGAGCGGCCTGCTCACGCTGTTC
TTTCCAGAGACCACCAACGTAGTTTTACCTACAACAGTGCAGGAAGCGGA
CGCCATAGGCGTCAAGAAGCAATCGAAGAGCAAGGATCTTGATCTAGTCG
TCACGGCCACTCAAGCGCAGGCAAGCTTTCTAGACCAT
BO15647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7442-RA | 1707 | CG7442-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
| CG7458-RA | 1719 | CG7458-PA | 1403..1562 | 1377..1536 | 245 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7442-RA | 2085 | CG7442-RA | 260..1963 | 17..1720 | 8520 | 100 | Plus |
| CG7458-RA | 2166 | CG7458-RA | 1595..1754 | 1377..1536 | 245 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21937302..21938255 | 573..1526 | 4770 | 100 | Plus |
| 3L | 28110227 | 3L | 21935263..21935504 | 228..469 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 21934963..21935177 | 17..231 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 21938319..21938514 | 1525..1720 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 21937139..21937242 | 470..573 | 520 | 100 | Plus |
| 3L | 28110227 | 3L | 21957409..21957558 | 1377..1526 | 195 | 75.3 | Plus |
| 3L | 28110227 | 3L | 21959871..21960020 | 1377..1526 | 195 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:13:03 has no hits.
BO15647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:51 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 1..1707 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:56 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 252..1963 | 14..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:40 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 260..1963 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:52 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 252..1963 | 14..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:50 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 260..1963 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:50 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21935267..21935504 | 232..469 | 100 | -> | Plus |
| 3L | 21937139..21937242 | 470..573 | 100 | -> | Plus |
| 3L | 21934963..21935177 | 17..231 | 100 | -> | Plus |
| 3L | 21937303..21938254 | 574..1525 | 100 | -> | Plus |
| 3L | 21938320..21938514 | 1526..1722 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:40 Download gff for
BO15647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21928063..21928277 | 17..231 | 100 | -> | Plus |
| arm_3L | 21930239..21930342 | 470..573 | 100 | -> | Plus |
| arm_3L | 21928367..21928604 | 232..469 | 100 | -> | Plus |
| arm_3L | 21930403..21931354 | 574..1525 | 100 | -> | Plus |
| arm_3L | 21931420..21931614 | 1526..1722 | 98 | | Plus |
BO15647.pep Sequence
Translation from 16 to 1738
> BO15647.pep
MAASEAPPADPAVEVAPPAKDSEDVTLDAILKHLGQFGRFQLIIFLLICL
PMMFHAMFSVTYVFTAATVTHRCSVEECDLPGSNYYEPHTNWSIPKNGKD
LDSCNRYTNSELPQWNHSVDICSADHFTKNKEACAHNEFVFRDDEVTISN
DFGIFCDDEWKLSMVGTINNLGQFFGIPIGGFVADRYGRSFSIALGGILG
AVLGVIRSFSPSYGWFLVFEFLDNMTSSTLYSTCFVIGIELVGPKRRVLA
CSVITVFYAVGEVLLAMSAKAFHDWRILLRITYGPSLILLAYFWILPESV
RWLLSQGKEERAKNILRRAAHVNKRELPESVLDKLVLANRDKLQQSSESR
FPIREAFKNFKWRIANCSLCWIVHVLVYYGLSLNVVLLDGDKYNNFAYIA
LVEIPGFFMPLLIMDRFGRRYSLCGLMLASGLCCIGTIFTGADQPVLQLV
LFLVGKLTITASFQVLYFFASEIYPTNLRNSLLSFCSMMGRFGSMLAPQT
PLLAKYYANAPAMLFAGAAIVSGLLTLFFPETTNVVLPTTVQEADAIGVK
KQSKSKDLDLVVTATQAQASFLDH
BO15647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7442-PA | 568 | CG7442-PA | 1..568 | 1..568 | 2965 | 100 | Plus |
| CG7458-PA | 572 | CG7458-PA | 30..570 | 19..556 | 1542 | 54.4 | Plus |
| CG4630-PA | 563 | CG4630-PA | 1..562 | 15..548 | 950 | 39.4 | Plus |
| CG4630-PB | 582 | CG4630-PB | 1..581 | 15..548 | 927 | 38.5 | Plus |
| Orct-PB | 548 | CG6331-PB | 4..524 | 28..550 | 697 | 31.7 | Plus |
