BO15649.complete Sequence
3091 bp assembled on 2006-10-11
GenBank Submission: FJ633532
> BO15649.complete
GAAGTTATCAGTCGACATGGCAGACGAAGCGGGCAGCCAAGCCGATGGCA
AGCGGCAGTTTATCTGCGGCGTGATCGAGGGATTCTACGGCCGGCCGTGG
ACCACGGAGCAGCGCAAGGACCTGTTCCGCAAGCTGAAATCCATGGGCAT
GGGGTCCAGTCCTTCGTACATGTACGCACCAAAGGACGACTACAAGCACC
GCGCCTACTGGCGAGAGCTATACACCGTTGAGGAGGCGGATCACCTTTCC
AGTCTCATTGCAGCGGCCAAGGAGGCGGGCATCACCTTTTACTACGCGTT
ATCGCCCGGGCTGGACATGACCTACAGCAGCCCCAAGGAGATCGCAACGT
TGAAGCGCAAGCTGGACCAGGTTGCGCAGTTTGGGTGTGAGGCCTACGCC
CTGCTCTTTGACGACATCGAGTCGGAGCTCTCAAAGGCGGACAAGGAGGT
CTTTCAGACGTTTGCTAACGCGCACGTGTCGGTGACCAACGAGATATACA
CGCATCTGGGCAGCCCCAGGTTTCTCTTCTGCCCCACCCAGTACTGTGCC
TCGCGAGCGGTGCCAACGGTCCAGGAATCGGAGTACCTCAATACCCTGGG
CTCCAAGCTGAACAACGAGATCGATATTTTGTGGACGGGGGATAAGGTTA
TCTCCAAGAACATATCCCTTGAGTCGATTCAAGAGATTACCGAGGTGCTG
CGCCGTCCGCCGTGCATCTGGGACAATCTTCATGCCAACGACTACGACCA
GAAGCGAATCTTCATGGGACCGTACAGCGGTCGATCGCCGGAGCTTATTC
CCCACCTGCGTGGTGTTATGACCAATCCCAACTGCGAATTCTATGGCAAT
TTTGTTGCCATCCATTCGCTGGCCTTCTGGTCGCGCTGCAGCCTGGACTC
GAAAGTGAACAGCTCGCTAAGTGCAGACATAAAACTGGAGACTGAAAACG
ATGATGACCTACCGGCGGAGTTTCTCTCTAAGAACGTTTACCACCCACGC
TTGGCTCTCAAAAACGCTATAACGGAGTGGCTACCGGAGTTCTTCATGAA
AAAGGAGGCCTGGGGACCGATCACCAAGCCCCAGCCTCAAGTCCAAATGG
TGATGCCCATTATTCCCATCATACCCTCCATAAATACCTGCATGAGTCTC
ACCACCACCACAACCACATCGACGAGCTCCAGGACGGTTCCACCCACGGT
CAACACCACTCAACTTCAAGCTCTGGCTGACGTTTGCGTTGTTACCTCTT
CCCTGACTCCTATCTCAAATCCAGTAATGAACTCCCTGGTCTCACCCACA
AAAGTGATCACGAACGATGACATCATCAATCCCATTCCGACCACAGCGGC
CAGCAACATTGAACTACCCAAGAAAATACCGATCTCCGTTGTCCCAGTGC
CCATTATGGAGACAAAGAGTGTGGAGGCTTCCGTGGAACTGGCTTTGGAC
AATGCGGTTTTCGATGACAATGAAATTGAGCCCAATAGTGATTCCGTGAA
GGAGCGGCTAGAGCTGGAGGTGAACCTAGAGGGGAAGCAGGAACCGGTGG
CCAATCTTAGTGTGGACACAATGCTGGACGATGACAGTCTTAGTCCCCTA
AGTGGCGTAGTCAATGAGCCAATGGAGTGCAGCAGCAGTATCACATCACA
GGTCTCTCCAAGGGAGGAGGAGGCCATTAAAGTGGTGGCCGACGATGTTC
TCATGGAGTCCGTTAACGATGTGCATAGTATGCATGTGGAGAGTGGGACT
TCGTCGCCGATCTCAAATGCGGAAATGCGCGAGGAAACTGAAGCTCAGTC
TGATAGGACTAACGATAATAATACCATCGAAGGCGAAGGAATAACCGTTG
ACGATTTGGTTCTTCTCTGCGACCTGTTCTATCTGCCCTTCGAACATGGC
AGTCGCGGCCACAAGCTGCTCGTGGAATTCAACTGGCTGAAGGGCAACGC
TAATGTGATACTGCAGGACCGGTCTGCCGGCGGCGGAGGCGATGCAATTA
AATCAGACAAGCCGGAGGTTAGCGAGTGGCACCAGCGTCGCGAGCAGTTC
GACCAACTCTGCAGTGCTGTAGTAGAGCTCCTAATTAAGATCGCCAATTG
CCCGAACAAGGAGATTTGCCACGAGCTGTACTCGTATATGTGGGACATCT
CCGGCGCCCTATCTCTGCTCAATTGCTATGTTAAGTGGCTGGCTCTCGGC
CATTTCCCGCAAAATACGTCTTCCTACACAGAGGGCAGCTACACATGGTT
TAGCAAGGGCTGGAAGGAGGCGTTCATGTCTGGTGATCAGGAGCCGTGGG
TCTTTAGAGGCGGCCTCATTGCCGACCTGCAACGCCTGATGCCTGTGGAC
TCGGGCAACGACCTGTTCGTGTACAAGCTTCCGGAACAGCCCACGGCCAA
CTACTATCTCTTGAGACCTTACTGCAATTCGGACGAACAGCAAGTCAACG
ATTTGTGCACTCGCCTGTATTTGCAGTGGCGGGGAGAGCTGGACGGAGGC
AGGCACATTCCGTTCCCGCTGCCGGCGAATGTGCCAAACATTGTGGCGGA
TGGGCTGATCGGTGGATATCTCACCCTCAGTCCGCAACTGTGCATTGTGG
CCTACGACGAGAGTAACCGTATCATTGGATATTCATGCGCCGCCCTGGAT
GTCAACATATTTCGACGCAACCTGGAGCTGTGCTGGTACACGGAACTGCG
TGAGAAGTACTCTAGAGATATTTGTCCACTGGAGGGTGGCGAGGAGGTTG
TACAGCTCGTCACCTCCCTTGTGGAGAGTTATCATGACAGCAGCGGTAAC
GGGGCTCTGGACCAGTGTCCCGTAGAGGTGAGCGGCTCCTTCCCTGCCGT
GTTGATCTCCGGAACTTTGCGCGAAGCGGAGGAGCGCGACTCGGGAATAA
CCAAGCGGATGCTCACCGTACTTCTGGCCGCCCTGCGTGCGAACGGCTGC
TTTGGTGCTCACGTTCGCGTTCCGCAACAAGATGTCGCCCAGGTGAACTT
TTATTCCAGAATCGGTTTCGTGGATGTCTATCGCGAGGAGGCCACCAAGT
GTATTTACATGGGTCGCCGTTTCGCAAGCTTTCTAGACCAT
BO15649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oga-RA | 3060 | CG5871-PA | 1..3057 | 17..3073 | 15270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oga-RA | 3409 | CG5871-RA | 146..3202 | 17..3073 | 15270 | 100 | Plus |
| CG3337-RB | 2819 | CG3337-RB | 887..1713 | 3073..2247 | 4135 | 100 | Minus |
| CG3337-RB | 2819 | CG3337-RB | 1772..2197 | 2247..1822 | 2130 | 100 | Minus |
| CG3337-RB | 2819 | CG3337-RB | 2417..2819 | 1726..1324 | 2015 | 100 | Minus |
| CG3337-RB | 2819 | CG3337-RB | 2256..2350 | 1821..1727 | 475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21221810..21222636 | 2247..3073 | 4135 | 100 | Plus |
| 3R | 32079331 | 3R | 21219509..21220268 | 252..1011 | 3785 | 99.9 | Plus |
| 3R | 32079331 | 3R | 21220616..21221106 | 1236..1726 | 2455 | 100 | Plus |
| 3R | 32079331 | 3R | 21221326..21221751 | 1822..2247 | 2130 | 100 | Plus |
| 3R | 32079331 | 3R | 21219222..21219458 | 17..253 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 21220330..21220554 | 1012..1236 | 1125 | 100 | Plus |
| 3R | 32079331 | 3R | 21221173..21221267 | 1727..1821 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:43 has no hits.
BO15649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:27 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5871-RA | 1..3060 | 17..3074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:35 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5871-RA | 141..3204 | 14..3079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:16 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oga-RA | 146..3202 | 17..3075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:27 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5871-RA | 141..3204 | 14..3079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:58 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oga-RA | 146..3202 | 17..3075 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:58 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21219222..21219456 | 17..251 | 100 | -> | Plus |
| 3R | 21219509..21220268 | 252..1011 | 99 | -> | Plus |
| 3R | 21220330..21220554 | 1012..1236 | 100 | -> | Plus |
| 3R | 21220617..21221106 | 1237..1726 | 100 | -> | Plus |
| 3R | 21221173..21221267 | 1727..1821 | 100 | -> | Plus |
| 3R | 21221326..21221750 | 1822..2246 | 100 | -> | Plus |
| 3R | 21221810..21222636 | 2247..3075 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:16 Download gff for
BO15649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17044944..17045178 | 17..251 | 100 | -> | Plus |
| arm_3R | 17045231..17045990 | 252..1011 | 99 | -> | Plus |
| arm_3R | 17046052..17046276 | 1012..1236 | 100 | -> | Plus |
| arm_3R | 17046339..17046828 | 1237..1726 | 100 | -> | Plus |
| arm_3R | 17046895..17046989 | 1727..1821 | 100 | -> | Plus |
| arm_3R | 17047048..17047472 | 1822..2246 | 100 | -> | Plus |
| arm_3R | 17047532..17048358 | 2247..3075 | 99 | | Plus |
BO15649.pep Sequence
Translation from 16 to 3091
> BO15649.pep
MADEAGSQADGKRQFICGVIEGFYGRPWTTEQRKDLFRKLKSMGMGSSPS
YMYAPKDDYKHRAYWRELYTVEEADHLSSLIAAAKEAGITFYYALSPGLD
MTYSSPKEIATLKRKLDQVAQFGCEAYALLFDDIESELSKADKEVFQTFA
NAHVSVTNEIYTHLGSPRFLFCPTQYCASRAVPTVQESEYLNTLGSKLNN
EIDILWTGDKVISKNISLESIQEITEVLRRPPCIWDNLHANDYDQKRIFM
GPYSGRSPELIPHLRGVMTNPNCEFYGNFVAIHSLAFWSRCSLDSKVNSS
LSADIKLETENDDDLPAEFLSKNVYHPRLALKNAITEWLPEFFMKKEAWG
PITKPQPQVQMVMPIIPIIPSINTCMSLTTTTTTSTSSRTVPPTVNTTQL
QALADVCVVTSSLTPISNPVMNSLVSPTKVITNDDIINPIPTTAASNIEL
PKKIPISVVPVPIMETKSVEASVELALDNAVFDDNEIEPNSDSVKERLEL
EVNLEGKQEPVANLSVDTMLDDDSLSPLSGVVNEPMECSSSITSQVSPRE
EEAIKVVADDVLMESVNDVHSMHVESGTSSPISNAEMREETEAQSDRTND
NNTIEGEGITVDDLVLLCDLFYLPFEHGSRGHKLLVEFNWLKGNANVILQ
DRSAGGGGDAIKSDKPEVSEWHQRREQFDQLCSAVVELLIKIANCPNKEI
CHELYSYMWDISGALSLLNCYVKWLALGHFPQNTSSYTEGSYTWFSKGWK
EAFMSGDQEPWVFRGGLIADLQRLMPVDSGNDLFVYKLPEQPTANYYLLR
PYCNSDEQQVNDLCTRLYLQWRGELDGGRHIPFPLPANVPNIVADGLIGG
YLTLSPQLCIVAYDESNRIIGYSCAALDVNIFRRNLELCWYTELREKYSR
DICPLEGGEEVVQLVTSLVESYHDSSGNGALDQCPVEVSGSFPAVLISGT
LREAEERDSGITKRMLTVLLAALRANGCFGAHVRVPQQDVAQVNFYSRIG
FVDVYREEATKCIYMGRRFASFLDH
BO15649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oga-PA | 1019 | CG5871-PA | 1..1019 | 1..1019 | 5352 | 100 | Plus |
