Clone Sequence Records
BO15650.complete Sequence
1445 bp assembled on 2010-04-09
GenBank Submission: KX793800
> BO15650.complete
GAAGTTATCAGTCGAACATGTCGGACTATAGATCGCAATCGCGCAGTGGC
GGGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTC
GCGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTG
AAGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGAC
AAGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGAC
ATCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCA
AGATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGC
TCAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGT
GATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGT
GGGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAAT
CCCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGT
GGCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAA
AGGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGAC
AATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGG
CGGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGA
ATGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTG
CCAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAA
CCAGGATCAGCTCTGGCGTCTCTTCGACATAATTCCCGGCTTGGATTACT
GCCAAATCATGCGCGAACATGGACCGCGCACCAATGAGGCCTTAGTGGTG
TACGACAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCT
GGAGTACCCAATGGGCGAACGCATCATTGTCAAAGTCAATGGAATGAGCT
CAGCTCGCATGGACACATCCTTCATAGACAAGCGAACCAAAAAGGATGCC
ATCTGCAATGTTCCCTTGCCCCCAACTCAGCCACTGGCATCGCCGGACGA
CCAGGTGGCCCAACGACTGTTCATTGTGCTCTCAGCGAACTTGCCGCATT
CGATATTGAAGAACATATTCTCTTGCTGGTCGGGACTGATCGACGTCTAC
CTTCTGCCCAACAAGAACTGTGGCTACGTCAAGTATGCGGAGGTTGAGAG
TGCTCAATTGGCCATTCGTACCCTAAACGGAGCCGAAATTTGCGGCACCA
AAATCAAGGTCATGGAGGCTGAGGAGCGAAGTGGCTCCGACGGCGATGAT
GGCGGTCGCAAGCGATTGAGACGGAACGCAAGCTTTCTAGACCAT
BO15650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 1413 | CG1316-PA | 1..1410 | 18..1427 | 7035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 2222 | CG1316-RA | 113..1523 | 17..1427 | 7040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4284605..4284990 | 533..918 | 1930 | 100 | Plus |
| 3L | 28110227 | 3L | 4283963..4284283 | 17..337 | 1590 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4284343..4284543 | 334..534 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4285598..4285771 | 1187..1360 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 4285425..4285531 | 1081..1187 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 4285175..4285272 | 983..1080 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 4285845..4285915 | 1357..1427 | 355 | 100 | Plus |
| 3L | 28110227 | 3L | 4285053..4285117 | 919..983 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 668..750 | 132 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 705..746 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 700..746 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 704..751 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 692..743 | 113 | 71.2 | Plus |
BO15650.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:18 Download gff for
BO15650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 109..1519 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:01 Download gff for
BO15650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 113..1523 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:45 Download gff for
BO15650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 113..1523 | 17..1429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:45 Download gff for
BO15650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4283963..4284283 | 17..337 | 99 | -> | Plus |
| 3L | 4284347..4284541 | 338..532 | 100 | -> | Plus |
| 3L | 4284605..4284990 | 533..918 | 100 | -> | Plus |
| 3L | 4285053..4285116 | 919..982 | 100 | -> | Plus |
| 3L | 4285175..4285272 | 983..1080 | 100 | -> | Plus |
| 3L | 4285425..4285531 | 1081..1187 | 100 | -> | Plus |
| 3L | 4285599..4285769 | 1188..1358 | 100 | -> | Plus |
| 3L | 4285847..4285915 | 1359..1429 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:01 Download gff for
BO15650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4283963..4284283 | 17..337 | 99 | -> | Plus |
| arm_3L | 4284347..4284541 | 338..532 | 100 | -> | Plus |
| arm_3L | 4284605..4284990 | 533..918 | 100 | -> | Plus |
| arm_3L | 4285053..4285116 | 919..982 | 100 | -> | Plus |
| arm_3L | 4285175..4285272 | 983..1080 | 100 | -> | Plus |
| arm_3L | 4285425..4285531 | 1081..1187 | 100 | -> | Plus |
| arm_3L | 4285599..4285769 | 1188..1358 | 100 | -> | Plus |
| arm_3L | 4285847..4285915 | 1359..1429 | 97 | | Plus |
BO15650.5prime Sequence
1122 bp (886 high quality bases) assembled on 2010-02-20
> BO15650.5prime
AGATCGCAATCGCGCAGTGGCGGGGGGCGTGGCGGTCAGGAGTACTCGAA
CGACGACGATCCGCCGATGTCGCGTCTCTTCATCATTTGCAACAAGGCGC
ACACCGAGGAGGATTTCCGTGAAGCCTTCTCGCCATACGGCGAAATCGAG
GATATCTGGGTGGTGAAGGACAAGCACACCCAGGAGAACAAGGGAATCGC
GTACGTCAAGTTCTCCAAGACATCCGATGCTGCCAAGGCACAGGAGGAGA
TGAACGGCAAGACCATTGGCAAGATGGATCGCACCCTTAAAGTCCTGGTG
GCAGCCAATCGCAATCAGGGCTCAAATAAGTCTGAGAACGAGCAGGAGAA
GTACGTGAGACTCTTCATAGTGATCCCCAAAACAGCCACCGAGGAGGATA
TTCGCGAGGAATTCTCGCAGTGGGGCGATGTGGAATCTGTCACAATTGTC
AAGGAGAAGAACAATGGCAATCCCAAGGGCTTCGGATATGTCCGCTTTAC
CAAGTTTTACTATGCAGCTGTGGCTTTCGAAAACTGCTCCGCCAAGTATA
AAGCTGTCTTTGCCGAGCCAAAGGGTTCTACACGCACACAGCGTGACCAG
TACGGCCGTCCCTCCGAGGACAATCCCTTGTATAGCAGCTCGGGACGTGG
CAATTCCAATTTCAATGGAGGCGGTAGCAGCAGCGGTGGCGGCGGCAGCA
ACAGCTACAACAACGACTGGAATGTATCGCAGAACAACGACATGGCGGCC
TTCCTGCGCATGCAGAATGTGCCAGTGGCCCAGCCATCCTGTCTGGAGGT
TAACGTGAGCAACTGCGTNCACCAGGATCAGCTCTGGCGTCTCTTCGACA
TTAATTCCGGGCTTGGATTACTGCCCAATCTTGCGCGAACATGGACCGCG
CACCATTGAGGCCTTTAGGGGGGTCCGACCACCCCAAAAGCCGCCTTTTA
GGCCAGGGACAAACTTCATGGCCTGGAATAACCCAAGGGGGGAACGCCTC
CATTGTCAAAGTTCAAGGGAATGGACCCTCCCTCCCATGGGCACCCTCCC
TTTAAAAAAAAACGCAAACAAAAAAGGGGGGCCTCCTTGGCATGGGTTCC
CTTGTGCCCCCCCCTCCCCCCC
BO15650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 2222 | CG1316-RA | 126..1142 | 1..1023 | 4669 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4284605..4284990 | 504..890 | 1814 | 98.4 | Plus |
| 3L | 28110227 | 3L | 4283976..4284283 | 1..308 | 1525 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4284343..4284543 | 305..505 | 990 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-12 17:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 639..721 | 132 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 676..717 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 671..717 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 675..722 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 663..714 | 113 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2407 | 676..742 | 110 | 62.7 | Plus |
BO15650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:03:34 Download gff for
BO15650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 122..1143 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 00:01:02 Download gff for
BO15650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 126..1147 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:02 Download gff for
BO15650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 126..1147 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:02 Download gff for
BO15650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4283976..4284283 | 1..308 | 99 | -> | Plus |
| 3L | 4284347..4284541 | 309..503 | 100 | -> | Plus |
| 3L | 4284605..4284990 | 504..890 | 98 | -> | Plus |
| 3L | 4285053..4285116 | 891..956 | 83 | -> | Plus |
| 3L | 4285175..4285195 | 957..977 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 00:01:02 Download gff for
BO15650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4283976..4284283 | 1..308 | 99 | -> | Plus |
| arm_3L | 4284347..4284541 | 309..503 | 100 | -> | Plus |
| arm_3L | 4284605..4284990 | 504..890 | 98 | -> | Plus |
| arm_3L | 4285053..4285116 | 891..956 | 83 | -> | Plus |
| arm_3L | 4285175..4285195 | 957..977 | 100 | == | Plus |
BO15650.pep Sequence
Translation from 17 to 1445
> BO15650.pep
MSDYRSQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPY
GEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTL
KVLVAANRNQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVES
VTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRT
QRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNN
DMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMRE
HGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVNGMSSARMDT
SFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFIVLSANLPHSILKNI
FSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVME
AEERSGSDGDDGGRKRLRRNASFLDH
BO15650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-PA | 470 | CG1316-PA | 1..470 | 1..470 | 2480 | 100 | Plus |
| Hrb98DE-PF | 361 | CG9983-PF | 5..242 | 6..244 | 197 | 23.9 | Plus |
| Hrb98DE-PD | 361 | CG9983-PD | 5..242 | 6..244 | 197 | 23.9 | Plus |
| Rbp9-PH | 439 | CG3151-PH | 103..427 | 20..337 | 196 | 21.9 | Plus |
| Rbp9-PG | 439 | CG3151-PG | 103..427 | 20..337 | 196 | 21.9 | Plus |
