Clone BO15656 Report

Search the DGRC for BO15656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptsar1-RA
Protein status:BO15656.pep: validated full length
Sequenced Size:613

Clone Sequence Records

BO15656.3prime Sequence

611 bp (611 high quality bases) assembled on 2006-06-02

> BO15656.3prime
ATGGTCTAGAAAGCTTGCATCGATATACTGCGCCAGCCAACGGAAACCCT
CGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGGA
CGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCTG
ATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGCT
TATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTCA
TCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCACG
GTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAGT
CCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGTG
AAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGGG
CACATGCTGCGCCAGCTTATCATCTTTGAGCATATGCAAGAGTGTGGTTT
TGCCAGCATTATCCAGGCCCAGGAACAATAATTTGCCAGACTTTTTCCAC
AGACCCAGGTATCCCAGCACTCCGGTGAACCAGTCCCAGATGAACATGTC
GACTGATAACT

BO15656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7073-PA 582 sar1-RA 1..579 597..19 2895 100 Minus
CG7073-PD 582 sar1-RD 1..579 597..19 2895 100 Minus
CG7073-PC 582 sar1-RC 1..579 597..19 2895 100 Minus
CG7073-PE 582 sar1-RE 1..579 597..19 2895 100 Minus
CG7073-PB 468 sar1-RB 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..691 597..19 2895 100 Minus
Sar1-RC 1801 CG7073-RC 462..1040 597..19 2895 100 Minus
Sar1-RD 1552 CG7073-RD 213..791 597..19 2895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 369..132 1190 100 Minus
3R 32079331 3R 22358371..22358491 555..435 605 100 Minus
3R 32079331 3R 22359835..22359950 134..19 580 100 Minus
3R 32079331 3R 22358563..22358628 434..369 330 100 Minus
3R 32079331 3R 22357629..22357673 597..553 225 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:02:24 has no hits.

BO15656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:28 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
sar1-PA 1..582 15..597 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:02 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7073-PE 1..582 15..597 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:57:53 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 158..746 14..607 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:25 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 207..795 14..607 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:25 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22359837..22359954 14..132 98   Minus
3R 22357623..22357671 555..607 92 -> Minus
3R 22358372..22358491 435..554 100 -> Minus
3R 22358563..22358628 369..434 100 -> Minus
3R 22359525..22359760 133..368 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:57:53 Download gff for BO15656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183345..18183393 555..607 92 -> Minus
arm_3R 18184094..18184213 435..554 100 -> Minus
arm_3R 18184285..18184350 369..434 100 -> Minus
arm_3R 18185247..18185482 133..368 100 -> Minus
arm_3R 18185559..18185676 14..132 98   Minus

BO15656.5prime Sequence

611 bp (611 high quality bases) assembled on 2006-05-30

> BO15656.5prime
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAG
CTTTCTAGACC

BO15656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7073-PA 582 sar1-RA 1..579 17..595 2895 100 Plus
CG7073-PD 582 sar1-RD 1..579 17..595 2895 100 Plus
CG7073-PC 582 sar1-RC 1..579 17..595 2895 100 Plus
CG7073-PE 582 sar1-RE 1..579 17..595 2895 100 Plus
CG7073-PB 468 sar1-RB 1..465 131..595 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..691 17..595 2895 100 Plus
Sar1-RC 1801 CG7073-RC 462..1040 17..595 2895 100 Plus
Sar1-RD 1552 CG7073-RD 213..791 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 245..482 1190 100 Plus
3R 32079331 3R 22358371..22358491 59..179 605 100 Plus
3R 32079331 3R 22359835..22359950 480..595 580 100 Plus
3R 32079331 3R 22358563..22358628 180..245 330 100 Plus
3R 32079331 3R 22357629..22357673 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:10:34 has no hits.

BO15656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:29 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
sar1-PA 1..582 17..599 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:03 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7073-PE 1..582 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:38 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 158..746 7..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:18 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 207..795 7..600 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:18 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22357623..22357671 7..59 92 -> Plus
3R 22358372..22358491 60..179 100 -> Plus
3R 22358563..22358628 180..245 100 -> Plus
3R 22359525..22359760 246..481 100 -> Plus
3R 22359837..22359954 482..600 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:38 Download gff for BO15656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183345..18183393 7..59 92 -> Plus
arm_3R 18184094..18184213 60..179 100 -> Plus
arm_3R 18184285..18184350 180..245 100 -> Plus
arm_3R 18185247..18185482 246..481 100 -> Plus
arm_3R 18185559..18185676 482..600 98   Plus

BO15656.complete Sequence

613 bp (613 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633534

> BO15656.complete
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAG
CTTTCTAGACCAT

BO15656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 582 CG7073-PE 1..579 17..595 2895 100 Plus
Sar1-RC 582 CG7073-PC 1..579 17..595 2895 100 Plus
Sar1-RD 582 CG7073-PD 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-RE 1452 CG7073-RE 113..691 17..595 2895 100 Plus
Sar1-RC 1801 CG7073-RC 462..1040 17..595 2895 100 Plus
Sar1-RD 1552 CG7073-RD 213..791 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22359524..22359761 245..482 1190 100 Plus
3R 32079331 3R 22358371..22358491 59..179 605 100 Plus
3R 32079331 3R 22359835..22359950 480..595 580 100 Plus
3R 32079331 3R 22358563..22358628 180..245 330 100 Plus
3R 32079331 3R 22357629..22357673 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:44:47 has no hits.

BO15656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:24 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RC 1..582 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:40 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RD 271..859 7..600 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:46 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
Sar1-RA 169..742 22..597 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:25 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
sar1-RD 271..859 7..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:12 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
Sar1-RD 218..791 22..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:12 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22357634..22357671 22..59 100 -> Plus
3R 22358372..22358491 60..179 100 -> Plus
3R 22358563..22358628 180..245 100 -> Plus
3R 22359525..22359760 246..481 100 -> Plus
3R 22359837..22359950 482..597 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:46 Download gff for BO15656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18183356..18183393 22..59 100 -> Plus
arm_3R 18184094..18184213 60..179 100 -> Plus
arm_3R 18184285..18184350 180..245 100 -> Plus
arm_3R 18185247..18185482 246..481 100 -> Plus
arm_3R 18185559..18185672 482..597 98   Plus

BO15656.pep Sequence

Translation from 16 to 613

> BO15656.pep
MFIWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVP
TLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDR
GRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNVFGLYQ
LTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWLAQYIDASFLDH

BO15656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sar1-PE 193 CG7073-PE 1..193 1..193 1031 100 Plus
Sar1-PC 193 CG7073-PC 1..193 1..193 1031 100 Plus
Sar1-PD 193 CG7073-PD 1..193 1..193 1031 100 Plus
Sar1-PA 193 CG7073-PA 1..193 1..193 1031 100 Plus
Arl1-PA 180 CG6025-PA 4..178 3..194 269 30.7 Plus