Clone Sequence Records
BO15656.3prime Sequence
611 bp (611 high quality bases) assembled on 2006-06-02
> BO15656.3prime
ATGGTCTAGAAAGCTTGCATCGATATACTGCGCCAGCCAACGGAAACCCT
CGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGGA
CGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCTG
ATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGCT
TATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTCA
TCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCACG
GTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAGT
CCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGTG
AAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGGG
CACATGCTGCGCCAGCTTATCATCTTTGAGCATATGCAAGAGTGTGGTTT
TGCCAGCATTATCCAGGCCCAGGAACAATAATTTGCCAGACTTTTTCCAC
AGACCCAGGTATCCCAGCACTCCGGTGAACCAGTCCCAGATGAACATGTC
GACTGATAACT
BO15656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 1..579 | 597..19 | 2895 | 100 | Minus |
CG7073-PD | 582 | sar1-RD | 1..579 | 597..19 | 2895 | 100 | Minus |
CG7073-PC | 582 | sar1-RC | 1..579 | 597..19 | 2895 | 100 | Minus |
CG7073-PE | 582 | sar1-RE | 1..579 | 597..19 | 2895 | 100 | Minus |
CG7073-PB | 468 | sar1-RB | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..691 | 597..19 | 2895 | 100 | Minus |
Sar1-RC | 1801 | CG7073-RC | 462..1040 | 597..19 | 2895 | 100 | Minus |
Sar1-RD | 1552 | CG7073-RD | 213..791 | 597..19 | 2895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 369..132 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 22358371..22358491 | 555..435 | 605 | 100 | Minus |
3R | 32079331 | 3R | 22359835..22359950 | 134..19 | 580 | 100 | Minus |
3R | 32079331 | 3R | 22358563..22358628 | 434..369 | 330 | 100 | Minus |
3R | 32079331 | 3R | 22357629..22357673 | 597..553 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:02:24 has no hits.
BO15656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:28 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 1..582 | 15..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:02 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 1..582 | 15..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:57:53 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 158..746 | 14..607 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:25 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 207..795 | 14..607 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:25 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22359837..22359954 | 14..132 | 98 | | Minus |
3R | 22357623..22357671 | 555..607 | 92 | -> | Minus |
3R | 22358372..22358491 | 435..554 | 100 | -> | Minus |
3R | 22358563..22358628 | 369..434 | 100 | -> | Minus |
3R | 22359525..22359760 | 133..368 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:57:53 Download gff for
BO15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183345..18183393 | 555..607 | 92 | -> | Minus |
arm_3R | 18184094..18184213 | 435..554 | 100 | -> | Minus |
arm_3R | 18184285..18184350 | 369..434 | 100 | -> | Minus |
arm_3R | 18185247..18185482 | 133..368 | 100 | -> | Minus |
arm_3R | 18185559..18185676 | 14..132 | 98 | | Minus |
BO15656.5prime Sequence
611 bp (611 high quality bases) assembled on 2006-05-30
> BO15656.5prime
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAG
CTTTCTAGACC
BO15656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
CG7073-PD | 582 | sar1-RD | 1..579 | 17..595 | 2895 | 100 | Plus |
CG7073-PC | 582 | sar1-RC | 1..579 | 17..595 | 2895 | 100 | Plus |
CG7073-PE | 582 | sar1-RE | 1..579 | 17..595 | 2895 | 100 | Plus |
CG7073-PB | 468 | sar1-RB | 1..465 | 131..595 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..691 | 17..595 | 2895 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 462..1040 | 17..595 | 2895 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 213..791 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 245..482 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22358371..22358491 | 59..179 | 605 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359950 | 480..595 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 180..245 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22357629..22357673 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:10:34 has no hits.
BO15656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:29 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 1..582 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:03 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 1..582 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:38 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 158..746 | 7..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:18 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 207..795 | 7..600 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:18 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22357623..22357671 | 7..59 | 92 | -> | Plus |
3R | 22358372..22358491 | 60..179 | 100 | -> | Plus |
3R | 22358563..22358628 | 180..245 | 100 | -> | Plus |
3R | 22359525..22359760 | 246..481 | 100 | -> | Plus |
3R | 22359837..22359954 | 482..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:38 Download gff for
BO15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183345..18183393 | 7..59 | 92 | -> | Plus |
arm_3R | 18184094..18184213 | 60..179 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 180..245 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 246..481 | 100 | -> | Plus |
arm_3R | 18185559..18185676 | 482..600 | 98 | | Plus |
BO15656.complete Sequence
613 bp (613 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633534
> BO15656.complete
GAAGTTATCAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGG
GATACCTGGGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTG
GATAATGCTGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCT
GGCGCAGCATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCG
GCAACATGCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGA
CGCGTCTGGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAAT
AGACGCCTGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATT
CGCTGCTCACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGC
AACAAAATCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGT
GTTCGGACTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCG
ATTTGCCCGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGA
CAGGGCTACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAG
CTTTCTAGACCAT
BO15656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 582 | CG7073-PE | 1..579 | 17..595 | 2895 | 100 | Plus |
Sar1-RC | 582 | CG7073-PC | 1..579 | 17..595 | 2895 | 100 | Plus |
Sar1-RD | 582 | CG7073-PD | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 113..691 | 17..595 | 2895 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 462..1040 | 17..595 | 2895 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 213..791 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 245..482 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22358371..22358491 | 59..179 | 605 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359950 | 480..595 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 180..245 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22357629..22357673 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:44:47 has no hits.
BO15656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:24 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RC | 1..582 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:40 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 271..859 | 7..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:46 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 169..742 | 22..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:25 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 271..859 | 7..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:12 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 218..791 | 22..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:12 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22357634..22357671 | 22..59 | 100 | -> | Plus |
3R | 22358372..22358491 | 60..179 | 100 | -> | Plus |
3R | 22358563..22358628 | 180..245 | 100 | -> | Plus |
3R | 22359525..22359760 | 246..481 | 100 | -> | Plus |
3R | 22359837..22359950 | 482..597 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:46 Download gff for
BO15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18183356..18183393 | 22..59 | 100 | -> | Plus |
arm_3R | 18184094..18184213 | 60..179 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 180..245 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 246..481 | 100 | -> | Plus |
arm_3R | 18185559..18185672 | 482..597 | 98 | | Plus |
BO15656.pep Sequence
Translation from 16 to 613
> BO15656.pep
MFIWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVP
TLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDR
GRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNVFGLYQ
LTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWLAQYIDASFLDH
BO15656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-PE | 193 | CG7073-PE | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PC | 193 | CG7073-PC | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PD | 193 | CG7073-PD | 1..193 | 1..193 | 1031 | 100 | Plus |
Sar1-PA | 193 | CG7073-PA | 1..193 | 1..193 | 1031 | 100 | Plus |
Arl1-PA | 180 | CG6025-PA | 4..178 | 3..194 | 269 | 30.7 | Plus |