BO15657.complete Sequence
1297 bp (1297 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633535
> BO15657.complete
GAAGTTATCAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTA
CGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCC
AGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAAT
GTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCG
TTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTC
AGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCC
CAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGC
GTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGC
AGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCG
GCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCG
TTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGC
TCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACG
TTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCG
ATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAG
CACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCC
ACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGG
TCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCGCC
TCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATCTGTTGCAAGAAA
CGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTTCTGCTCGTCGCT
CACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCCGCTATCGCCGCT
ACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGGACGCAGTGCAGG
CGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTGACAAAAACGCGA
AGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAGCAACAGGTTCGA
CGGGGACGCAGTCGTAGTCGTAAGCCTACAGGCAAACCACAGCGTCCAGA
GGTTAAGCGCGAGGATCTTGACATGGAACTGGATCAGTATATGTCCACCA
CTAAGTCGGAGATGGACTACTTGCTGAAGGCAAGCTTTCTAGACCAT
BO15657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RE | 1266 | CG9775-PE | 1..1263 | 17..1279 | 6300 | 99.9 | Plus |
| CG9775-RC | 1266 | CG9775-PC | 1..1263 | 17..1279 | 6300 | 99.9 | Plus |
| CG9775-RA | 1266 | CG9775-PA | 1..1263 | 17..1279 | 6300 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RE | 1966 | CG9775-RE | 401..1664 | 16..1279 | 6305 | 99.9 | Plus |
| CG9775-RC | 1740 | CG9775-RC | 175..1438 | 16..1279 | 6305 | 99.9 | Plus |
| CG9775-RA | 1930 | CG9775-RA | 365..1628 | 16..1279 | 6305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4639018..4639557 | 885..346 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 4638539..4638841 | 1186..884 | 1500 | 99.7 | Minus |
| 3R | 32079331 | 3R | 4640013..4640223 | 226..16 | 1040 | 99.5 | Minus |
| 3R | 32079331 | 3R | 4639633..4639752 | 346..227 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 4638312..4638411 | 1279..1180 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:08 has no hits.
BO15657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:54 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RC | 1..1266 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:48 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RC | 127..1400 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:08 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 366..1628 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:54 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RC | 127..1400 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:43 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 366..1628 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:43 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4638544..4638839 | 886..1181 | 100 | <- | Minus |
| 3R | 4638310..4638409 | 1182..1281 | 98 | <- | Minus |
| 3R | 4639018..4639557 | 346..885 | 100 | <- | Minus |
| 3R | 4639634..4639752 | 227..345 | 100 | <- | Minus |
| 3R | 4640013..4640222 | 17..226 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:08 Download gff for
BO15657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 464032..464131 | 1182..1281 | 98 | <- | Minus |
| arm_3R | 464266..464561 | 886..1181 | 100 | <- | Minus |
| arm_3R | 464740..465279 | 346..885 | 100 | <- | Minus |
| arm_3R | 465356..465474 | 227..345 | 100 | <- | Minus |
| arm_3R | 465735..465944 | 17..226 | 99 | | Minus |
BO15657.pep Sequence
Translation from 16 to 1297
> BO15657.pep
MNTGISLNERFTQMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNS
RLLNEFKRLHTVQTALKLKRRSLRTTAVSGRGPRVAGVKSLRLAPNGKPI
RSNNVTRVATMRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQ
RRPSVGGAAERVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRG
RSIGRSQSRNRDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRA
PSQIRGVAGGRVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSS
GAVNNSASARRSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGK
IIRNGKADKNAKVKATNGVKSGPQQQVRRGRSRSRKPTGKPQRPEVKRED
LDMELDQYMSTTKSEMDYLLKASFLDH
BO15657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-PE | 421 | CG9775-PE | 1..421 | 1..421 | 2079 | 100 | Plus |
| CG9775-PC | 421 | CG9775-PC | 1..421 | 1..421 | 2079 | 100 | Plus |
| CG9775-PA | 421 | CG9775-PA | 1..421 | 1..421 | 2079 | 100 | Plus |
| CG9775-PD | 315 | CG9775-PD | 1..282 | 111..392 | 1378 | 99.3 | Plus |
| CG9915-PC | 820 | CG9915-PC | 77..493 | 23..407 | 199 | 26.4 | Plus |
