Clone Sequence Records
BO15658.3prime Sequence
798 bp (797 high quality bases) assembled on 2006-06-02
> BO15658.3prime
ATGGTCTAGAAAGCTTGCGCCTGAGGAGGCAATGGCGCTCTGCTGACCAT
CCAAATCCTGGGCCTGGGCCTTGTTCTGGCGCACGAGCTCAGCGCGACGT
TCGAGTTTTTGAACTTTTTCAATTTTTTTTTGCAATTCCTTTTCGCGTTT
CTGCTCGGCGGCGAACAATTTGTTCTCATAAATGCGCGCTTTCTCCTCGA
TCTTTTGACATTCCAATTGATCGTTCTGCGATTTGATTTCGGCAATTTTG
ATTGTGTTATGCTCCTTTAGGCGATCCAACATTTTCTTGATATTCTCATC
GCGAAGAGACTGAGCAATCTTCAACTTTTCCTCGATTGCCTTCTGCTCGT
TGGCCTTCTGCTGCTCAAGAGTCTCACGCGTCTTTTCGATATCCTGGGCA
TGGATCTTTAGCTTCTCCTTCATGTCACTGATGATGGCCTCTCGCTTCTC
CACATGCAGCTCCATTTTCGACTCCAGCTGCTCCTTGGTCTGAGTAATAA
ACTCATTGGTGATCTCATCCTTTTTGCGAGTCGCCTCCTCGACTTTAGCC
AGCTTAGTGGAGATGTCAGCCATCTTCTTGGCTTCTAGAGAAATGCGACG
TTCCTCGGCCGCCTTAAGTTTCTGCTCAATCTCCTCGACGCTAACGTTCT
TGCCAGGGGTGACCGGTCGTTTTGGAACGGCCACATTGGGTGCCGGTTCG
GCCAGGATGACCTCATAGCTCAATCCCCCGCGGGACTTCTCCTGGCAGCG
AATCTCTGTGGCTTCAGTATCAACAGTGTTGTTCACCATGTCGACTGA
BO15658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PC | 774 | stai-RC | 1..771 | 789..19 | 3855 | 100 | Minus |
CG31641-PB | 909 | stai-RB | 164..906 | 761..19 | 3715 | 100 | Minus |
CG31641-PA | 753 | stai-RA | 164..666 | 761..259 | 2515 | 100 | Minus |
CG31641-PA | 753 | stai-RA | 667..750 | 102..19 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1021 | 789..19 | 3855 | 100 | Minus |
stai-RD | 2872 | CG31641-RD | 537..1280 | 762..19 | 3720 | 100 | Minus |
stai-RE | 2395 | CG31641-RE | 815..1557 | 761..19 | 3715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 591..406 | 930 | 100 | Minus |
2L | 23513712 | 2L | 6121772..6121943 | 763..592 | 860 | 100 | Minus |
2L | 23513712 | 2L | 6122698..6122859 | 258..97 | 795 | 99.4 | Minus |
2L | 23513712 | 2L | 6122260..6122410 | 409..259 | 755 | 100 | Minus |
2L | 23513712 | 2L | 6122978..6123061 | 102..19 | 420 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 438..354 | 110 | 58.8 | Minus |
BO15658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:30 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-PC | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:05 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PC | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:43:39 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 14..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:47 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 14..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:47 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6122264..6122410 | 259..405 | 100 | -> | Minus |
2L | 6122698..6122853 | 103..258 | 100 | -> | Minus |
2L | 6122978..6123065 | 14..102 | 97 | | Minus |
2L | 6101771..6101798 | 762..789 | 100 | -> | Minus |
2L | 6121774..6121943 | 592..761 | 100 | -> | Minus |
2L | 6122005..6122190 | 406..591 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:43:39 Download gff for
BO15658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6101771..6101798 | 762..789 | 100 | -> | Minus |
arm_2L | 6121774..6121943 | 592..761 | 100 | -> | Minus |
arm_2L | 6122005..6122190 | 406..591 | 100 | -> | Minus |
arm_2L | 6122264..6122410 | 259..405 | 100 | -> | Minus |
arm_2L | 6122698..6122853 | 103..258 | 100 | -> | Minus |
arm_2L | 6122978..6123065 | 14..102 | 97 | | Minus |
BO15658.5prime Sequence
803 bp (780 high quality bases) assembled on 2006-05-30
> BO15658.5prime
GAAGTTATCAGTCGACATGGTGAACAACACTGTTGATACTGAAGCCACAG
AGATTCGCTGCCAGGAGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATC
CTGGCCGAACCGGCACCCAATGTGGCCGTTCCAAAACGACCGGTCACCCC
TGGCAAGAACGTTAGCGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCG
AGGAACGTCGCATTTCTCTAGAAGCCAAGAAGATGGCTGACATCTCCACT
AAGCTGGCTAAAGTCGAGGAGGCGACTCGCAAAAAGGATGAGATCACCAA
TGAGTTTATTACTCAGACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGC
ATGTGGAGAAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCTAAAG
ATCCATGCCCAGGATATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAA
GGCCAACGAGCAGAAGGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTC
TTCGCGATGAGAATATCAAGAAAATGTTGGATCGCCTAAAGGAGCATAAC
ACAATCAAAATTGCCGAAATCAAATCGCAGAACGATCAATTGGAATGTCA
AAAGATCGAGGAGAAAGCGCGCATTTATGAGAACAAATTGTTCGCCGCCG
AGCAGAAACGCGAAAAGGAATTGCAAAAAAAAATTGAAAAAGTTCAAAAA
CTCGAACGTCGCGCTGAGCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGA
TTTGGATGGTCAGCAGAGCGCCATTGCCTCCTCAGGCGCAAGCTTTCTAG
ACC
BO15658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PC | 774 | stai-RC | 1..771 | 17..787 | 3855 | 100 | Plus |
CG31641-PB | 909 | stai-RB | 164..906 | 45..787 | 3715 | 100 | Plus |
CG31641-PA | 753 | stai-RA | 164..666 | 45..547 | 2515 | 100 | Plus |
CG31641-PA | 753 | stai-RA | 667..750 | 704..787 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1021 | 17..787 | 3855 | 100 | Plus |
stai-RD | 2872 | CG31641-RD | 537..1280 | 44..787 | 3720 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 815..1557 | 45..787 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 215..400 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 43..214 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 548..709 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 397..547 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123061 | 704..787 | 420 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 368..452 | 110 | 58.8 | Plus |
BO15658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:31 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-PC | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:06 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PC | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:09 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:00 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:00 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
2L | 6122978..6123065 | 704..792 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:09 Download gff for
BO15658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
arm_2L | 6122978..6123065 | 704..792 | 97 | | Plus |
BO15658.complete Sequence
805 bp (805 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633536
> BO15658.complete
GAAGTTATCAGTCGACATGGTGAACAACACTGTTGATACTGAAGCCACAG
AGATTCGCTGCCAGGAGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATC
CTGGCCGAACCGGCACCCAATGTGGCCGTTCCAAAACGACCGGTCACCCC
TGGCAAGAACGTTAGCGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCG
AGGAACGTCGCATTTCTCTAGAAGCCAAGAAGATGGCTGACATCTCCACT
AAGCTGGCTAAAGTCGAGGAGGCGACTCGCAAAAAGGATGAGATCACCAA
TGAGTTTATTACTCAGACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGC
ATGTGGAGAAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCTAAAG
ATCCATGCCCAGGATATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAA
GGCCAACGAGCAGAAGGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTC
TTCGCGATGAGAATATCAAGAAAATGTTGGATCGCCTAAAGGAGCATAAC
ACAATCAAAATTGCCGAAATCAAATCGCAGAACGATCAATTGGAATGTCA
AAAGATCGAGGAGAAAGCGCGCATTTATGAGAACAAATTGTTCGCCGCCG
AGCAGAAACGCGAAAAGGAATTGCAAAAAAAAATTGAAAAAGTTCAAAAA
CTCGAACGTCGCGCTGAGCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGA
TTTGGATGGTCAGCAGAGCGCCATTGCCTCCTCAGGCGCAAGCTTTCTAG
ACCAT
BO15658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 774 | CG31641-PC | 1..771 | 17..787 | 3855 | 100 | Plus |
stai-RD | 1146 | CG31641-PD | 400..1143 | 44..787 | 3720 | 100 | Plus |
stai-RE | 909 | CG31641-PE | 164..906 | 45..787 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1021 | 17..787 | 3855 | 100 | Plus |
stai-RD | 2872 | CG31641-RD | 537..1280 | 44..787 | 3720 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 815..1557 | 45..787 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 215..400 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 43..214 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 548..709 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 397..547 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123061 | 704..787 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 368..452 | 110 | 58.8 | Plus |
BO15658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:55 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:57 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 250..1020 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:37 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1021 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:56 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 250..1024 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:12 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1021 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:12 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
2L | 6122978..6123061 | 704..789 | 97 | | Plus |
2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:37 Download gff for
BO15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
arm_2L | 6122978..6123061 | 704..789 | 97 | | Plus |
arm_2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
BO15658.pep Sequence
Translation from 16 to 805
> BO15658.pep
MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS
VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ
TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK
AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK
ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ
SAIASSGASFLDH
BO15658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-PC | 257 | CG31641-PC | 1..257 | 1..257 | 1256 | 100 | Plus |
stai-PD | 381 | CG31641-PD | 134..381 | 10..257 | 1210 | 100 | Plus |
stai-PE | 302 | CG31641-PE | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PB | 302 | CG31641-PB | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PA | 250 | CG31641-PA | 56..250 | 11..257 | 850 | 76.5 | Plus |